RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 A0A087WZG4 1122 aa16.24■□□□□ 0.19
SQSTM1-201ENST00000360718 CHD1LQ86WJ1 897 aa16.23■□□□□ 0.19
SQSTM1-201ENST00000360718 LNPKQ9C0E8 428 aa16.23■□□□□ 0.19
SQSTM1-201ENST00000360718 BICC1Q9H694 974 aaKnown RBP16.23■□□□□ 0.19
SQSTM1-201ENST00000360718 COL15A1P39059 1388 aa16.23■□□□□ 0.19
SQSTM1-201ENST00000360718 POLA2Q14181 598 aa16.22■□□□□ 0.19
SQSTM1-201ENST00000360718 SSH3Q8TE77 659 aa16.22■□□□□ 0.19
SQSTM1-201ENST00000360718 CWC25Q9NXE8 425 aaPredicted RBP16.22■□□□□ 0.19
SQSTM1-201ENST00000360718 C4BP0C0L5 1744 aa16.22■□□□□ 0.19
SQSTM1-201ENST00000360718 H7C1W4 665 aa16.22■□□□□ 0.19
SQSTM1-201ENST00000360718 GPTP24298 496 aa16.22■□□□□ 0.19
SQSTM1-201ENST00000360718 CCDC191Q8NCU4 936 aa16.22■□□□□ 0.19
SQSTM1-201ENST00000360718 EXOC6BQ9Y2D4 811 aa16.22■□□□□ 0.19
SQSTM1-201ENST00000360718 SRGAP3O43295 1099 aa16.21■□□□□ 0.19
SQSTM1-201ENST00000360718 CAMTA2O94983 1202 aa16.21■□□□□ 0.19
SQSTM1-201ENST00000360718 MTX1Q13505 466 aa16.21■□□□□ 0.19
SQSTM1-201ENST00000360718 BCORQ6W2J9 1755 aa16.21■□□□□ 0.19
SQSTM1-201ENST00000360718 ERVV-1B6SEH8 477 aa16.21■□□□□ 0.19
SQSTM1-201ENST00000360718 APBB1O00213 710 aa16.21■□□□□ 0.19
SQSTM1-201ENST00000360718 TRIM28Q13263 835 aaKnown RBP16.2■□□□□ 0.18
SQSTM1-201ENST00000360718 HSP90AB3PQ58FF7 597 aa16.2■□□□□ 0.18
SQSTM1-201ENST00000360718 PROM2Q8N271 834 aa16.2■□□□□ 0.18
SQSTM1-201ENST00000360718 UBN2Q6ZU65 1347 aa16.2■□□□□ 0.18
SQSTM1-201ENST00000360718 SMARCA5O60264 1052 aaPredicted RBP16.2■□□□□ 0.18
SQSTM1-201ENST00000360718 RC3H1Q5TC82 1133 aaKnown RBP16.2■□□□□ 0.18
SQSTM1-201ENST00000360718 IL27Q8NEV9 243 aa16.2■□□□□ 0.18
SQSTM1-201ENST00000360718 GNPATO15228 680 aa16.19■□□□□ 0.18
SQSTM1-201ENST00000360718 NLRP10Q86W26 655 aa16.19■□□□□ 0.18
SQSTM1-201ENST00000360718 SYNE4Q8N205 404 aa16.19■□□□□ 0.18
SQSTM1-201ENST00000360718 TNS1Q9HBL0 1735 aaKnown RBP16.18■□□□□ 0.18
SQSTM1-201ENST00000360718 RPS6KA4O75676 772 aa16.18■□□□□ 0.18
SQSTM1-201ENST00000360718 ZNF34Q8IZ26 560 aa16.18■□□□□ 0.18
SQSTM1-201ENST00000360718 FOXO4P98177 505 aa16.17■□□□□ 0.18
SQSTM1-201ENST00000360718 C16orf71Q8IYS4 520 aaPredicted RBP16.17■□□□□ 0.18
SQSTM1-201ENST00000360718 FAM89AQ96GI7 184 aa16.17■□□□□ 0.18
SQSTM1-201ENST00000360718 TBC1D2Q9BYX2 928 aa16.17■□□□□ 0.18
SQSTM1-201ENST00000360718 SLKQ9H2G2 1235 aaPredicted RBP16.17■□□□□ 0.18
SQSTM1-201ENST00000360718 PA2G4Q9UQ80 394 aaKnown RBP16.17■□□□□ 0.18
SQSTM1-201ENST00000360718 C4AP0C0L4 1744 aa16.17■□□□□ 0.18
SQSTM1-201ENST00000360718 RABL6Q3YEC7 729 aaPredicted RBP16.17■□□□□ 0.18
SQSTM1-201ENST00000360718 C22orf23Q9BZE7 217 aa16.17■□□□□ 0.18
SQSTM1-201ENST00000360718 SCN7AQ01118 1682 aa16.17■□□□□ 0.18
SQSTM1-201ENST00000360718 UBR3Q6ZT12 1888 aa16.17■□□□□ 0.18
SQSTM1-201ENST00000360718 HSP90AB4PQ58FF6 505 aa16.16■□□□□ 0.18
SQSTM1-201ENST00000360718 OTUD7AQ8TE49 926 aaPredicted RBP16.16■□□□□ 0.18
SQSTM1-201ENST00000360718 ANTXR1Q9H6X2 564 aa16.16■□□□□ 0.18
SQSTM1-201ENST00000360718 MYH3P11055 1940 aa16.16■□□□□ 0.18
SQSTM1-201ENST00000360718 SURF6O75683 361 aaKnown RBP16.16■□□□□ 0.18
SQSTM1-201ENST00000360718 TXNRD1Q16881 649 aa16.16■□□□□ 0.18
SQSTM1-201ENST00000360718 KLHDC4Q8TBB5 520 aa16.16■□□□□ 0.18
SQSTM1-201ENST00000360718 BCL2L12Q9HB09 334 aa16.16■□□□□ 0.18
SQSTM1-201ENST00000360718 SRP68Q9UHB9 627 aaKnown RBP16.16■□□□□ 0.18
SQSTM1-201ENST00000360718 PCCAP05165 728 aaPredicted RBP16.15■□□□□ 0.18
SQSTM1-201ENST00000360718 LRRCC1Q9C099 1032 aa16.15■□□□□ 0.18
SQSTM1-201ENST00000360718 RAB11FIP3O75154 756 aa16.15■□□□□ 0.18
SQSTM1-201ENST00000360718 APBA3O96018 575 aa16.15■□□□□ 0.18
SQSTM1-201ENST00000360718 ZBTB38Q8NAP3 1195 aaPredicted RBP16.15■□□□□ 0.18
SQSTM1-201ENST00000360718 RTCBQ9Y3I0 505 aaKnown RBP16.15■□□□□ 0.18
SQSTM1-201ENST00000360718 RFX5P48382 616 aaPredicted RBP16.14■□□□□ 0.17
SQSTM1-201ENST00000360718 SLC27A3Q5K4L6 730 aa16.14■□□□□ 0.17
SQSTM1-201ENST00000360718 SUSD4Q5VX71 490 aa16.14■□□□□ 0.17
SQSTM1-201ENST00000360718 LMBR1LQ6UX01 489 aa16.14■□□□□ 0.17
SQSTM1-201ENST00000360718 ARHGEF1Q92888 912 aaKnown RBP16.14■□□□□ 0.17
SQSTM1-201ENST00000360718 PHF14O94880 888 aa16.14■□□□□ 0.17
SQSTM1-201ENST00000360718 MFAP1P55081 439 aaKnown RBP16.13■□□□□ 0.17
SQSTM1-201ENST00000360718 OS9Q13438 667 aaPredicted RBP16.13■□□□□ 0.17
SQSTM1-201ENST00000360718 USPL1Q5W0Q7 1092 aa16.13■□□□□ 0.17
SQSTM1-201ENST00000360718 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.13■□□□□ 0.17
SQSTM1-201ENST00000360718 FAM177BA6PVY3 158 aa16.12■□□□□ 0.17
SQSTM1-201ENST00000360718 PLSCR1O15162 318 aa16.12■□□□□ 0.17
SQSTM1-201ENST00000360718 AK7Q96M32 723 aa16.12■□□□□ 0.17
SQSTM1-201ENST00000360718 NARFQ9UHQ1 456 aa16.12■□□□□ 0.17
SQSTM1-201ENST00000360718 TRMT112Q9UI30 125 aaKnown RBP16.12■□□□□ 0.17
SQSTM1-201ENST00000360718 NIP7Q9Y221 180 aaKnown RBP eCLIP16.12■□□□□ 0.17
SQSTM1-201ENST00000360718 ZNF652Q9Y2D9 606 aa16.12■□□□□ 0.17
SQSTM1-201ENST00000360718 HMGB2P26583 209 aaKnown RBP16.12■□□□□ 0.17
SQSTM1-201ENST00000360718 PLEKHM2Q8IWE5 1019 aa16.12■□□□□ 0.17
SQSTM1-201ENST00000360718 IL1RAPL2Q9NP60 686 aa16.12■□□□□ 0.17
SQSTM1-201ENST00000360718 BRPF3Q9ULD4 1205 aa16.12■□□□□ 0.17
SQSTM1-201ENST00000360718 PTPN12Q05209 780 aaKnown RBP16.11■□□□□ 0.17
SQSTM1-201ENST00000360718 KIF1BPQ96EK5 621 aa16.11■□□□□ 0.17
SQSTM1-201ENST00000360718 SIL1Q9H173 461 aa16.11■□□□□ 0.17
SQSTM1-201ENST00000360718 CDHR2Q9BYE9 1310 aa16.11■□□□□ 0.17
SQSTM1-201ENST00000360718 TBC1D9BQ66K14 1250 aa16.11■□□□□ 0.17
SQSTM1-201ENST00000360718 CLEC4GQ6UXB4 293 aa16.11■□□□□ 0.17
SQSTM1-201ENST00000360718 ERC1Q8IUD2 1116 aa16.11■□□□□ 0.17
SQSTM1-201ENST00000360718 ILDR1Q86SU0 546 aaPredicted RBP16.1■□□□□ 0.17
SQSTM1-201ENST00000360718 DDX60Q8IY21 1712 aaKnown RBP16.1■□□□□ 0.17
SQSTM1-201ENST00000360718 RHPN1Q8TCX5 695 aa16.1■□□□□ 0.17
SQSTM1-201ENST00000360718 CCDC85AQ96PX6 553 aaPredicted RBP16.1■□□□□ 0.17
SQSTM1-201ENST00000360718 PLA2G12BQ9BX93 195 aa16.1■□□□□ 0.17
SQSTM1-201ENST00000360718 CHMP5Q9NZZ3 219 aa16.1■□□□□ 0.17
SQSTM1-201ENST00000360718 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.1■□□□□ 0.17
SQSTM1-201ENST00000360718 IRS4O14654 1257 aaPredicted RBP16.1■□□□□ 0.17
SQSTM1-201ENST00000360718 NTSR2O95665 410 aa16.1■□□□□ 0.17
SQSTM1-201ENST00000360718 G3BP1Q13283 466 aaKnown RBP eCLIP16.1■□□□□ 0.172e-7■□□□□ 10.8
SQSTM1-201ENST00000360718 L1TD1Q5T7N2 865 aaKnown RBP16.1■□□□□ 0.17
SQSTM1-201ENST00000360718 CHMP3Q9Y3E7 222 aa16.1■□□□□ 0.17
SQSTM1-201ENST00000360718 SALL3Q9BXA9 1300 aa16.09■□□□□ 0.17
SQSTM1-201ENST00000360718 USP42Q9H9J4 1324 aaKnown RBP16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms