RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 ZSCAN23Q3MJ62 389 aa25.1■■□□□ 1.61
CCDC88B-203ENST00000359902 RABL6Q3YEC7 729 aaPredicted RBP25.1■■□□□ 1.61
CCDC88B-203ENST00000359902 FAM227BQ96M60 508 aa25.1■■□□□ 1.61
CCDC88B-203ENST00000359902 BOLA2Q9H3K6 86 aa25.1■■□□□ 1.61
CCDC88B-203ENST00000359902 LIMCH1Q9UPQ0 1083 aa25.1■■□□□ 1.61
CCDC88B-203ENST00000359902 PTPN12Q05209 780 aaKnown RBP25.09■■□□□ 1.61
CCDC88B-203ENST00000359902 NECTIN1Q15223 517 aa25.09■■□□□ 1.61
CCDC88B-203ENST00000359902 PRPF40BQ6NWY9 871 aaKnown RBP25.09■■□□□ 1.61
CCDC88B-203ENST00000359902 CASTP20810 708 aaKnown RBP25.09■■□□□ 1.61
CCDC88B-203ENST00000359902 NMIQ13287 307 aaPredicted RBP25.09■■□□□ 1.61
CCDC88B-203ENST00000359902 TOM1L2Q6ZVM7 507 aa25.09■■□□□ 1.61
CCDC88B-203ENST00000359902 CCDC171Q6TFL3 1326 aa25.09■■□□□ 1.61
CCDC88B-203ENST00000359902 SNRKQ9NRH2 765 aa25.08■■□□□ 1.61
CCDC88B-203ENST00000359902 PCDH11XQ9BZA7 1347 aa25.08■■□□□ 1.61
CCDC88B-203ENST00000359902 PCDH11YQ9BZA8 1340 aa25.08■■□□□ 1.61
CCDC88B-203ENST00000359902 ARFGEF2Q9Y6D5 1785 aa25.08■■□□□ 1.61
CCDC88B-203ENST00000359902 A0A087WZG4 1122 aa25.08■■□□□ 1.61
CCDC88B-203ENST00000359902 NBPF26B4DH59 902 aa25.08■■□□□ 1.61
CCDC88B-203ENST00000359902 CPA1P15085 419 aa25.08■■□□□ 1.61
CCDC88B-203ENST00000359902 ADCK5Q3MIX3 580 aa25.08■■□□□ 1.61
CCDC88B-203ENST00000359902 NBPF14Q5TI25 921 aa25.08■■□□□ 1.61
CCDC88B-203ENST00000359902 NBPF10Q6P3W6 841 aaKnown RBP25.08■■□□□ 1.61
CCDC88B-203ENST00000359902 NBPF15Q8N660 670 aa25.08■■□□□ 1.61
CCDC88B-203ENST00000359902 RRAGDQ9NQL2 400 aaPredicted RBP25.08■■□□□ 1.61
CCDC88B-203ENST00000359902 CASP7P55210 303 aa25.07■■□□□ 1.6
CCDC88B-203ENST00000359902 LARP6Q9BRS8 491 aaKnown RBP25.07■■□□□ 1.6
CCDC88B-203ENST00000359902 TM6SF1Q9BZW5 370 aa25.07■■□□□ 1.6
CCDC88B-203ENST00000359902 AFDNP55196 1824 aaKnown RBP25.07■■□□□ 1.6
CCDC88B-203ENST00000359902 SOS2Q07890 1332 aaPredicted RBP25.07■■□□□ 1.6
CCDC88B-203ENST00000359902 ZSWIM6Q9HCJ5 1215 aa25.07■■□□□ 1.6
CCDC88B-203ENST00000359902 LAMB4A4D0S4 1761 aa25.06■■□□□ 1.6
CCDC88B-203ENST00000359902 MAP4K1Q92918 833 aa25.06■■□□□ 1.6
CCDC88B-203ENST00000359902 JAKMIP1Q96N16 626 aaKnown RBP25.06■■□□□ 1.6
CCDC88B-203ENST00000359902 ERBB4Q15303 1308 aa25.06■■□□□ 1.6
CCDC88B-203ENST00000359902 ERVV-2B6SEH9 535 aa25.06■■□□□ 1.6
CCDC88B-203ENST00000359902 WDR33Q9C0J8 1336 aaKnown RBP25.05■■□□□ 1.6
CCDC88B-203ENST00000359902 VPS53Q5VIR6 699 aa25.05■■□□□ 1.6
CCDC88B-203ENST00000359902 FSD1Q9BTV5 496 aa25.05■■□□□ 1.6
CCDC88B-203ENST00000359902 RBM27Q9P2N5 1060 aaKnown RBP25.05■■□□□ 1.6
CCDC88B-203ENST00000359902 NSFL1CQ9UNZ2 370 aaKnown RBP25.05■■□□□ 1.6
CCDC88B-203ENST00000359902 RBM8AQ9Y5S9 174 aaKnown RBP25.05■■□□□ 1.6
CCDC88B-203ENST00000359902 TFCP2Q12800 502 aa25.04■■□□□ 1.6
CCDC88B-203ENST00000359902 SLAIN2Q9P270 581 aa25.04■■□□□ 1.6
CCDC88B-203ENST00000359902 A0A0D9SFI3 127 aa25.04■■□□□ 1.6
CCDC88B-203ENST00000359902 NKX1-1Q15270 411 aaPredicted RBP25.04■■□□□ 1.6
CCDC88B-203ENST00000359902 TNNI3KQ59H18 835 aa25.04■■□□□ 1.6
CCDC88B-203ENST00000359902 PDRG1Q9NUG6 133 aa25.04■■□□□ 1.6
CCDC88B-203ENST00000359902 DBNLQ9UJU6 430 aaKnown RBP25.04■■□□□ 1.6
CCDC88B-203ENST00000359902 FPGT-TNNI3KV9GXZ4 949 aa25.04■■□□□ 1.6
CCDC88B-203ENST00000359902 RPAP1Q9BWH6 1393 aaPredicted RBP25.04■■□□□ 1.6
CCDC88B-203ENST00000359902 COL5A2P05997 1499 aaPredicted RBP25.04■■□□□ 1.6
CCDC88B-203ENST00000359902 CREB3L3Q68CJ9 461 aa25.03■■□□□ 1.6
CCDC88B-203ENST00000359902 CYP46A1Q9Y6A2 500 aa25.03■■□□□ 1.6
CCDC88B-203ENST00000359902 ATP5JP18859 108 aa25.03■■□□□ 1.6
CCDC88B-203ENST00000359902 ZKSCAN1P17029 563 aaPredicted RBP25.02■■□□□ 1.6
CCDC88B-203ENST00000359902 NASPP49321 788 aaPredicted RBP25.02■■□□□ 1.6
CCDC88B-203ENST00000359902 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.02■■□□□ 1.6
CCDC88B-203ENST00000359902 H7C1W4 665 aa25.02■■□□□ 1.6
CCDC88B-203ENST00000359902 TTLL7Q6ZT98 887 aa25.02■■□□□ 1.6
CCDC88B-203ENST00000359902 TMEM63CQ9P1W3 806 aa25.02■■□□□ 1.6
CCDC88B-203ENST00000359902 LARGE1O95461 756 aa25.01■■□□□ 1.59
CCDC88B-203ENST00000359902 MBD3O95983 291 aa25.01■■□□□ 1.59
CCDC88B-203ENST00000359902 CARD10Q9BWT7 1032 aa25.01■■□□□ 1.59
CCDC88B-203ENST00000359902 IL2RBP14784 551 aa25.01■■□□□ 1.59
CCDC88B-203ENST00000359902 FOXO4P98177 505 aa25.01■■□□□ 1.59
CCDC88B-203ENST00000359902 LMBR1LQ6UX01 489 aa25.01■■□□□ 1.59
CCDC88B-203ENST00000359902 MED23Q9ULK4 1368 aa25■■□□□ 1.59
CCDC88B-203ENST00000359902 A1BGP04217 495 aa25■■□□□ 1.59
CCDC88B-203ENST00000359902 KCNJ4P48050 445 aa25■■□□□ 1.59
CCDC88B-203ENST00000359902 EDC3Q96F86 508 aaKnown RBP25■■□□□ 1.59
CCDC88B-203ENST00000359902 UBR2Q8IWV8 1755 aa25■■□□□ 1.59
CCDC88B-203ENST00000359902 SLC27A2O14975 620 aa25■■□□□ 1.59
CCDC88B-203ENST00000359902 KCPQ6ZWJ8 1503 aa24.99■■□□□ 1.59
CCDC88B-203ENST00000359902 ZSCAN31Q96LW9 406 aaPredicted RBP24.99■■□□□ 1.59
CCDC88B-203ENST00000359902 FOXD4L6Q3SYB3 417 aaPredicted RBP24.98■■□□□ 1.59
CCDC88B-203ENST00000359902 FOXD4L3Q6VB84 417 aaPredicted RBP24.98■■□□□ 1.59
CCDC88B-203ENST00000359902 DDX54Q8TDD1 881 aaKnown RBP24.98■■□□□ 1.59
CCDC88B-203ENST00000359902 SMC3Q9UQE7 1217 aa24.98■■□□□ 1.59
CCDC88B-203ENST00000359902 PRIM1P49642 420 aaKnown RBP24.98■■□□□ 1.59
CCDC88B-203ENST00000359902 SYT1P21579 422 aa24.97■■□□□ 1.59
CCDC88B-203ENST00000359902 ZNF589Q86UQ0 364 aaPredicted RBP24.97■■□□□ 1.59
CCDC88B-203ENST00000359902 DNAJC5Q9H3Z4 198 aa24.97■■□□□ 1.59
CCDC88B-203ENST00000359902 SH2B1Q9NRF2 756 aaPredicted RBP24.97■■□□□ 1.59
CCDC88B-203ENST00000359902 CWC25Q9NXE8 425 aaPredicted RBP24.97■■□□□ 1.59
CCDC88B-203ENST00000359902 ZSCAN22P10073 491 aaPredicted RBP24.97■■□□□ 1.59
CCDC88B-203ENST00000359902 DBNDD2Q9BQY9 259 aa24.97■■□□□ 1.59
CCDC88B-203ENST00000359902 STX6O43752 255 aa24.96■■□□□ 1.59
CCDC88B-203ENST00000359902 CCDC83Q8IWF9 413 aa24.96■■□□□ 1.59
CCDC88B-203ENST00000359902 RBSNQ9H1K0 784 aa24.96■■□□□ 1.59
CCDC88B-203ENST00000359902 JCADQ9P266 1359 aa24.96■■□□□ 1.59
CCDC88B-203ENST00000359902 PPP1R9BQ96SB3 815 aa24.96■■□□□ 1.59
CCDC88B-203ENST00000359902 PSMA5P28066 241 aa24.95■■□□□ 1.58
CCDC88B-203ENST00000359902 USP48Q86UV5 1035 aa24.95■■□□□ 1.58
CCDC88B-203ENST00000359902 GDPD2Q9HCC8 539 aa24.95■■□□□ 1.58
CCDC88B-203ENST00000359902 STRN4Q9NRL3 753 aa24.95■■□□□ 1.58
CCDC88B-203ENST00000359902 PAPPAQ13219 1627 aa24.95■■□□□ 1.58
CCDC88B-203ENST00000359902 TAF5LO75529 589 aa24.95■■□□□ 1.58
CCDC88B-203ENST00000359902 CCDC173Q0VFZ6 552 aa24.95■■□□□ 1.58
CCDC88B-203ENST00000359902 COL9A3Q14050 684 aaPredicted RBP24.95■■□□□ 1.58
CCDC88B-203ENST00000359902 ME3Q16798 604 aa24.95■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms