RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 STRN4Q9NRL3 753 aa18.96■□□□□ 0.63
HMGA1-202ENST00000347617 CHPF2Q9P2E5 772 aa18.96■□□□□ 0.63
HMGA1-202ENST00000347617 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.96■□□□□ 0.63
HMGA1-202ENST00000347617 COL16A1Q07092 1604 aaPredicted RBP18.95■□□□□ 0.62
HMGA1-202ENST00000347617 F6X3S4 739 aa18.95■□□□□ 0.62
HMGA1-202ENST00000347617 GADD45BO75293 160 aaPredicted RBP18.95■□□□□ 0.62
HMGA1-202ENST00000347617 KIAA1524Q8TCG1 905 aa18.95■□□□□ 0.62
HMGA1-202ENST00000347617 ANKRD7Q92527 254 aa18.95■□□□□ 0.62
HMGA1-202ENST00000347617 DDX21Q9NR30 783 aaKnown RBP eCLIP18.95■□□□□ 0.62
HMGA1-202ENST00000347617 PHLPP1O60346 1717 aa18.94■□□□□ 0.62
HMGA1-202ENST00000347617 SNRPA1P09661 255 aaKnown RBP18.94■□□□□ 0.62
HMGA1-202ENST00000347617 PPP4R3BQ5MIZ7 849 aa18.94■□□□□ 0.62
HMGA1-202ENST00000347617 SLC4A10Q6U841 1118 aa18.94■□□□□ 0.62
HMGA1-202ENST00000347617 NECTIN2Q92692 538 aa18.94■□□□□ 0.62
HMGA1-202ENST00000347617 ANO2Q9NQ90 1003 aa18.94■□□□□ 0.62
HMGA1-202ENST00000347617 PODXL2Q9NZ53 605 aa18.94■□□□□ 0.62
HMGA1-202ENST00000347617 CTIFO43310 598 aaKnown RBP18.93■□□□□ 0.62
HMGA1-202ENST00000347617 TTC5Q8N0Z6 440 aa18.93■□□□□ 0.62
HMGA1-202ENST00000347617 FMNL2Q96PY5 1086 aa18.93■□□□□ 0.62
HMGA1-202ENST00000347617 PHAXQ9H814 394 aaKnown RBP18.93■□□□□ 0.62
HMGA1-202ENST00000347617 BCL2L12Q9HB09 334 aa18.93■□□□□ 0.62
HMGA1-202ENST00000347617 HSPA4P34932 840 aa18.93■□□□□ 0.62
HMGA1-202ENST00000347617 CHAMP1Q96JM3 812 aa18.93■□□□□ 0.62
HMGA1-202ENST00000347617 FUCA2Q9BTY2 467 aa18.93■□□□□ 0.62
HMGA1-202ENST00000347617 DISP2A7MBM2 1401 aa18.91■□□□□ 0.62
HMGA1-202ENST00000347617 APBB1O00213 710 aa18.91■□□□□ 0.62
HMGA1-202ENST00000347617 DNAAF4Q8WXU2 420 aa18.91■□□□□ 0.62
HMGA1-202ENST00000347617 CDCA7Q9BWT1 371 aaPredicted RBP18.91■□□□□ 0.62
HMGA1-202ENST00000347617 TTC12Q9H892 705 aaPredicted RBP18.91■□□□□ 0.62
HMGA1-202ENST00000347617 PALD1Q9ULE6 856 aa18.91■□□□□ 0.62
HMGA1-202ENST00000347617 PRDM10Q9NQV6 1147 aa18.91■□□□□ 0.62
HMGA1-202ENST00000347617 THRAP3Q9Y2W1 955 aaKnown RBP18.91■□□□□ 0.62
HMGA1-202ENST00000347617 SHANK3Q9BYB0 1731 aa18.9■□□□□ 0.62
HMGA1-202ENST00000347617 HCLS1P14317 486 aaPredicted RBP18.9■□□□□ 0.62
HMGA1-202ENST00000347617 SLC39A6Q13433 755 aa18.9■□□□□ 0.62
HMGA1-202ENST00000347617 KSR2Q6VAB6 950 aa18.9■□□□□ 0.62
HMGA1-202ENST00000347617 ZNF496Q96IT1 587 aaPredicted RBP18.9■□□□□ 0.62
HMGA1-202ENST00000347617 HDAC5Q9UQL6 1122 aa18.9■□□□□ 0.62
HMGA1-202ENST00000347617 STX6O43752 255 aa18.89■□□□□ 0.61
HMGA1-202ENST00000347617 ALDH1L1O75891 902 aa18.89■□□□□ 0.61
HMGA1-202ENST00000347617 DDX58O95786 925 aaKnown RBP18.89■□□□□ 0.61
HMGA1-202ENST00000347617 F13A1P00488 732 aa18.89■□□□□ 0.61
HMGA1-202ENST00000347617 ATP8B2P98198 1209 aa18.89■□□□□ 0.61
HMGA1-202ENST00000347617 PDIA6Q15084 440 aa18.89■□□□□ 0.61
HMGA1-202ENST00000347617 BEND3Q5T5X7 828 aa18.89■□□□□ 0.61
HMGA1-202ENST00000347617 USP44Q9H0E7 712 aa18.89■□□□□ 0.61
HMGA1-202ENST00000347617 PLCH1Q4KWH8 1693 aa18.89■□□□□ 0.61
HMGA1-202ENST00000347617 PI4KAP2A4QPH2 592 aa18.88■□□□□ 0.61
HMGA1-202ENST00000347617 CCDC192P0DO97 292 aa18.88■□□□□ 0.61
HMGA1-202ENST00000347617 ILDR1Q86SU0 546 aaPredicted RBP18.88■□□□□ 0.61
HMGA1-202ENST00000347617 PI4KAP1Q8N8J0 262 aa18.88■□□□□ 0.61
HMGA1-202ENST00000347617 TRIM6-TRIM34B2RNG4 842 aa18.88■□□□□ 0.61
HMGA1-202ENST00000347617 CBX1P83916 185 aa18.88■□□□□ 0.61
HMGA1-202ENST00000347617 ZNF830Q96NB3 372 aaPredicted RBP18.88■□□□□ 0.61
HMGA1-202ENST00000347617 OGFRQ9NZT2 677 aa18.88■□□□□ 0.61
HMGA1-202ENST00000347617 LIMCH1Q9UPQ0 1083 aa18.88■□□□□ 0.61
HMGA1-202ENST00000347617 RAD50Q92878 1312 aa18.88■□□□□ 0.61
HMGA1-202ENST00000347617 ZSCAN31Q96LW9 406 aaPredicted RBP18.87■□□□□ 0.61
HMGA1-202ENST00000347617 ZHX1Q9UKY1 873 aaPredicted RBP18.87■□□□□ 0.61
HMGA1-202ENST00000347617 SMC3Q9UQE7 1217 aa18.87■□□□□ 0.61
HMGA1-202ENST00000347617 CNPY2Q9Y2B0 182 aa18.87■□□□□ 0.61
HMGA1-202ENST00000347617 ADCY9O60503 1353 aa18.87■□□□□ 0.61
HMGA1-202ENST00000347617 RAB11FIP3O75154 756 aa18.86■□□□□ 0.61
HMGA1-202ENST00000347617 GABPB1Q06547 395 aaPredicted RBP18.86■□□□□ 0.61
HMGA1-202ENST00000347617 RILPL2Q969X0 211 aa18.86■□□□□ 0.61
HMGA1-202ENST00000347617 TTC14Q96N46 770 aa18.86■□□□□ 0.61
HMGA1-202ENST00000347617 ARID3AQ99856 593 aa18.86■□□□□ 0.61
HMGA1-202ENST00000347617 GDPD2Q9HCC8 539 aa18.86■□□□□ 0.61
HMGA1-202ENST00000347617 CCDC171Q6TFL3 1326 aa18.86■□□□□ 0.61
HMGA1-202ENST00000347617 RIOK3O14730 519 aaKnown RBP18.86■□□□□ 0.61
HMGA1-202ENST00000347617 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.86■□□□□ 0.61
HMGA1-202ENST00000347617 DDX54Q8TDD1 881 aaKnown RBP18.86■□□□□ 0.61
HMGA1-202ENST00000347617 PRAMEF22A3QJZ6 481 aa18.85■□□□□ 0.61
HMGA1-202ENST00000347617 SMTNL1A8MU46 457 aa18.85■□□□□ 0.61
HMGA1-202ENST00000347617 UBTFL1P0CB47 393 aaPredicted RBP18.85■□□□□ 0.61
HMGA1-202ENST00000347617 ATP2B3Q16720 1220 aa18.85■□□□□ 0.61
HMGA1-202ENST00000347617 SH2B1Q9NRF2 756 aaPredicted RBP18.85■□□□□ 0.61
HMGA1-202ENST00000347617 UBR2Q8IWV8 1755 aa18.85■□□□□ 0.61
HMGA1-202ENST00000347617 PAPPAQ13219 1627 aa18.85■□□□□ 0.61
HMGA1-202ENST00000347617 TNS2Q63HR2 1409 aa18.84■□□□□ 0.61
HMGA1-202ENST00000347617 SYT1P21579 422 aa18.84■□□□□ 0.61
HMGA1-202ENST00000347617 FAM200AQ8TCP9 573 aa18.84■□□□□ 0.61
HMGA1-202ENST00000347617 CGNQ9P2M7 1197 aaKnown RBP18.84■□□□□ 0.61
HMGA1-202ENST00000347617 LRP6O75581 1613 aa18.84■□□□□ 0.61
HMGA1-202ENST00000347617 C5P01031 1676 aa18.84■□□□□ 0.61
HMGA1-202ENST00000347617 EXOC5O00471 708 aa18.83■□□□□ 0.61
HMGA1-202ENST00000347617 PROSER3Q2NL68 480 aa18.83■□□□□ 0.61
HMGA1-202ENST00000347617 LRP10Q7Z4F1 713 aa18.83■□□□□ 0.61
HMGA1-202ENST00000347617 LINS1Q8NG48 757 aa18.83■□□□□ 0.61
HMGA1-202ENST00000347617 UPF3BQ9BZI7 483 aaKnown RBP18.83■□□□□ 0.61
HMGA1-202ENST00000347617 EXOC6BQ9Y2D4 811 aa18.83■□□□□ 0.61
HMGA1-202ENST00000347617 PAXBP1Q9Y5B6 917 aa18.83■□□□□ 0.61
HMGA1-202ENST00000347617 NWD2Q9ULI1 1742 aa18.83■□□□□ 0.61
HMGA1-202ENST00000347617 FAM193AP78312 1265 aa18.83■□□□□ 0.6
HMGA1-202ENST00000347617 NOL8Q76FK4 1167 aaKnown RBP18.83■□□□□ 0.6
HMGA1-202ENST00000347617 KCNF1Q9H3M0 494 aa18.83■□□□□ 0.6
HMGA1-202ENST00000347617 MAP3K2Q9Y2U5 619 aa18.83■□□□□ 0.6
HMGA1-202ENST00000347617 USP16Q9Y5T5 823 aa18.83■□□□□ 0.6
HMGA1-202ENST00000347617 LAMB4A4D0S4 1761 aa18.82■□□□□ 0.6
HMGA1-202ENST00000347617 ELP1O95163 1332 aa18.82■□□□□ 0.6
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