RNA–Protein interactions for RNA: ENST00000342503.8

RTN1-202, Transcript of reticulon 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene RTN1, Length 1,703 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN1-202ENST00000342503 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP24.48■■□□□ 1.51
RTN1-202ENST00000342503 ANKRD36CQ5JPF3 1778 aa24.48■■□□□ 1.51
RTN1-202ENST00000342503 PTPN12Q05209 780 aaKnown RBP24.47■■□□□ 1.51
RTN1-202ENST00000342503 LMBR1LQ6UX01 489 aa24.47■■□□□ 1.51
RTN1-202ENST00000342503 AACSQ86V21 672 aa24.47■■□□□ 1.51
RTN1-202ENST00000342503 ARXQ96QS3 562 aa24.47■■□□□ 1.51
RTN1-202ENST00000342503 MAP4K4O95819 1239 aaPredicted RBP24.46■■□□□ 1.51
RTN1-202ENST00000342503 CHMLP26374 656 aa24.46■■□□□ 1.51
RTN1-202ENST00000342503 TRIM28Q13263 835 aaKnown RBP24.46■■□□□ 1.51
RTN1-202ENST00000342503 NUP98P52948 1817 aa24.45■■□□□ 1.5
RTN1-202ENST00000342503 REC8O95072 547 aa24.45■■□□□ 1.5
RTN1-202ENST00000342503 GIGYF2Q6Y7W6 1299 aaKnown RBP24.45■■□□□ 1.5
RTN1-202ENST00000342503 EAF2Q96CJ1 260 aaPredicted RBP24.45■■□□□ 1.5
RTN1-202ENST00000342503 ECHDC1Q9NTX5 307 aa24.45■■□□□ 1.5
RTN1-202ENST00000342503 CICQ96RK0 1608 aaPredicted RBP24.45■■□□□ 1.5
RTN1-202ENST00000342503 GLRX3O76003 335 aaKnown RBP24.44■■□□□ 1.5
RTN1-202ENST00000342503 HLFQ16534 295 aa24.44■■□□□ 1.5
RTN1-202ENST00000342503 GPATCH3Q96I76 525 aa24.44■■□□□ 1.5
RTN1-202ENST00000342503 ESYT1Q9BSJ8 1104 aa24.44■■□□□ 1.5
RTN1-202ENST00000342503 USP21Q9UK80 565 aa24.44■■□□□ 1.5
RTN1-202ENST00000342503 IL6STP40189 918 aaPredicted RBP24.44■■□□□ 1.5
RTN1-202ENST00000342503 CHMP3Q9Y3E7 222 aa24.44■■□□□ 1.5
RTN1-202ENST00000342503 RREB1Q92766 1687 aa24.43■■□□□ 1.5
RTN1-202ENST00000342503 ATP6V1AP38606 617 aa24.43■■□□□ 1.5
RTN1-202ENST00000342503 CCDC8Q9H0W5 538 aaPredicted RBP24.43■■□□□ 1.5
RTN1-202ENST00000342503 LOC102724428A0A0B4J2F2 783 aa24.42■■□□□ 1.5
RTN1-202ENST00000342503 KCNQ2O43526 872 aa24.42■■□□□ 1.5
RTN1-202ENST00000342503 SIK1P57059 783 aa24.42■■□□□ 1.5
RTN1-202ENST00000342503 CNTROBQ8N137 903 aa24.42■■□□□ 1.5
RTN1-202ENST00000342503 SNX21Q969T3 373 aa24.41■■□□□ 1.5
RTN1-202ENST00000342503 PALLDQ8WX93 1383 aa24.41■■□□□ 1.5
RTN1-202ENST00000342503 PCCAP05165 728 aaPredicted RBP24.41■■□□□ 1.5
RTN1-202ENST00000342503 HSP90AB3PQ58FF7 597 aa24.41■■□□□ 1.5
RTN1-202ENST00000342503 INTS5Q6P9B9 1019 aaKnown RBP24.41■■□□□ 1.5
RTN1-202ENST00000342503 HSCBQ8IWL3 235 aa24.41■■□□□ 1.5
RTN1-202ENST00000342503 THSD7AQ9UPZ6 1657 aa24.4■■□□□ 1.5
RTN1-202ENST00000342503 ITPK1Q13572 414 aa24.4■■□□□ 1.5
RTN1-202ENST00000342503 CCDC87Q9NVE4 849 aa24.4■■□□□ 1.5
RTN1-202ENST00000342503 TLR7Q9NYK1 1049 aaKnown RBP24.4■■□□□ 1.5
RTN1-202ENST00000342503 HSPA1LP34931 641 aa24.39■■□□□ 1.5
RTN1-202ENST00000342503 TFCP2Q12800 502 aa24.39■■□□□ 1.5
RTN1-202ENST00000342503 NBR1Q14596 966 aa24.39■■□□□ 1.5
RTN1-202ENST00000342503 DZIP3Q86Y13 1208 aaKnown RBP24.39■■□□□ 1.5
RTN1-202ENST00000342503 SMARCC1Q92922 1105 aaPredicted RBP24.39■■□□□ 1.5
RTN1-202ENST00000342503 GPTP24298 496 aa24.38■■□□□ 1.49
RTN1-202ENST00000342503 CRKLP46109 303 aaKnown RBP24.38■■□□□ 1.49
RTN1-202ENST00000342503 MYT1Q01538 1121 aa24.38■■□□□ 1.49
RTN1-202ENST00000342503 TBC1D2BQ9UPU7 963 aa24.38■■□□□ 1.49
RTN1-202ENST00000342503 MYH14Q7Z406 1995 aaKnown RBP24.38■■□□□ 1.49
RTN1-202ENST00000342503 ERVV-1B6SEH8 477 aa24.38■■□□□ 1.49
RTN1-202ENST00000342503 COL5A3P25940 1745 aaPredicted RBP24.38■■□□□ 1.49
RTN1-202ENST00000342503 EIF5P55010 431 aaKnown RBP24.38■■□□□ 1.49
RTN1-202ENST00000342503 NLRP10Q86W26 655 aa24.38■■□□□ 1.49
RTN1-202ENST00000342503 ZBTB38Q8NAP3 1195 aaPredicted RBP24.38■■□□□ 1.49
RTN1-202ENST00000342503 FAM89AQ96GI7 184 aa24.38■■□□□ 1.49
RTN1-202ENST00000342503 TNNI3KQ59H18 835 aa24.37■■□□□ 1.49
RTN1-202ENST00000342503 MEX3CQ5U5Q3 659 aaKnown RBP24.37■■□□□ 1.49
RTN1-202ENST00000342503 FPGT-TNNI3KV9GXZ4 949 aa24.37■■□□□ 1.49
RTN1-202ENST00000342503 ZNF831Q5JPB2 1677 aa24.36■■□□□ 1.49
RTN1-202ENST00000342503 PLA2G12BQ9BX93 195 aa24.35■■□□□ 1.49
RTN1-202ENST00000342503 SLKQ9H2G2 1235 aaPredicted RBP24.35■■□□□ 1.49
RTN1-202ENST00000342503 ATG9AQ7Z3C6 839 aa24.35■■□□□ 1.49
RTN1-202ENST00000342503 CDHR2Q9BYE9 1310 aa24.35■■□□□ 1.49
RTN1-202ENST00000342503 RABEP1Q15276 862 aa24.34■■□□□ 1.49
RTN1-202ENST00000342503 ZNF594Q96JF6 807 aaPredicted RBP24.34■■□□□ 1.49
RTN1-202ENST00000342503 MYH3P11055 1940 aa24.34■■□□□ 1.49
RTN1-202ENST00000342503 SPRYD3Q8NCJ5 442 aa24.33■■□□□ 1.49
RTN1-202ENST00000342503 IL25Q9H293 177 aa24.33■■□□□ 1.49
RTN1-202ENST00000342503 ANO2Q9NQ90 1003 aa24.33■■□□□ 1.49
RTN1-202ENST00000342503 CD2BP2O95400 341 aaKnown RBP24.32■■□□□ 1.48
RTN1-202ENST00000342503 SYNE4Q8N205 404 aa24.32■■□□□ 1.48
RTN1-202ENST00000342503 EVI5LQ96CN4 794 aa24.32■■□□□ 1.48
RTN1-202ENST00000342503 ANTXR1Q9H6X2 564 aa24.32■■□□□ 1.48
RTN1-202ENST00000342503 DBNLQ9UJU6 430 aaKnown RBP24.32■■□□□ 1.48
RTN1-202ENST00000342503 EYA2O00167 538 aa24.32■■□□□ 1.48
RTN1-202ENST00000342503 ZNF34Q8IZ26 560 aa24.32■■□□□ 1.48
RTN1-202ENST00000342503 BTAF1O14981 1849 aa24.31■■□□□ 1.48
RTN1-202ENST00000342503 NHSQ6T4R5 1651 aa24.31■■□□□ 1.48
RTN1-202ENST00000342503 AFF2P51816 1311 aa24.31■■□□□ 1.48
RTN1-202ENST00000342503 CSF1RP07333 972 aa24.31■■□□□ 1.48
RTN1-202ENST00000342503 IL15P40933 162 aaPredicted RBP24.31■■□□□ 1.48
RTN1-202ENST00000342503 LRRC24Q50LG9 513 aa24.31■■□□□ 1.48
RTN1-202ENST00000342503 BOLA2Q9H3K6 86 aa24.31■■□□□ 1.48
RTN1-202ENST00000342503 UBN2Q6ZU65 1347 aa24.3■■□□□ 1.48
RTN1-202ENST00000342503 SGSM2O43147 1006 aa24.3■■□□□ 1.48
RTN1-202ENST00000342503 CIAO1O76071 339 aa24.3■■□□□ 1.48
RTN1-202ENST00000342503 CCDC57Q2TAC2 916 aa24.3■■□□□ 1.48
RTN1-202ENST00000342503 PTF1AQ7RTS3 328 aa24.3■■□□□ 1.48
RTN1-202ENST00000342503 GJD4Q96KN9 370 aaPredicted RBP24.3■■□□□ 1.48
RTN1-202ENST00000342503 TRMT112Q9UI30 125 aaKnown RBP24.3■■□□□ 1.48
RTN1-202ENST00000342503 MCCP23508 829 aa24.29■■□□□ 1.48
RTN1-202ENST00000342503 CCDC85AQ96PX6 553 aaPredicted RBP24.29■■□□□ 1.48
RTN1-202ENST00000342503 DBNDD2Q9BQY9 259 aa24.29■■□□□ 1.48
RTN1-202ENST00000342503 PUS3Q9BZE2 481 aaKnown RBP24.29■■□□□ 1.48
RTN1-202ENST00000342503 DIAPH3Q9NSV4 1193 aa24.29■■□□□ 1.48
RTN1-202ENST00000342503 ATP5JP18859 108 aa24.28■■□□□ 1.48
RTN1-202ENST00000342503 CWC27Q6UX04 472 aaKnown RBP24.28■■□□□ 1.48
RTN1-202ENST00000342503 GPR108Q9NPR9 543 aa24.28■■□□□ 1.48
RTN1-202ENST00000342503 EPB41L2O43491 1005 aaKnown RBP24.27■■□□□ 1.48
RTN1-202ENST00000342503 CAMTA2O94983 1202 aa24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms