RNA–Protein interactions for RNA: ENST00000338910.8

PSPC1-201, Transcript of paraspeckle component 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PSPC1, Length 2,407 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-201ENST00000338910 AHDC1Q5TGY3 1603 aaPredicted RBP22.59■■□□□ 1.21
PSPC1-201ENST00000338910 GRM8O00222 908 aa22.58■■□□□ 1.21
PSPC1-201ENST00000338910 OS9Q13438 667 aaPredicted RBP22.58■■□□□ 1.21
PSPC1-201ENST00000338910 UNC5CLQ8IV45 518 aa22.58■■□□□ 1.21
PSPC1-201ENST00000338910 ARID3AQ99856 593 aa22.58■■□□□ 1.21
PSPC1-201ENST00000338910 CCDC94Q9BW85 323 aaPredicted RBP22.58■■□□□ 1.21
PSPC1-201ENST00000338910 IGKV5-2P06315 115 aa22.58■■□□□ 1.2
PSPC1-201ENST00000338910 PTMAP06454 111 aaKnown RBP22.58■■□□□ 1.2
PSPC1-201ENST00000338910 SHANK3Q9BYB0 1731 aa22.57■■□□□ 1.2
PSPC1-201ENST00000338910 MTX1Q13505 466 aa22.57■■□□□ 1.2
PSPC1-201ENST00000338910 CUL4AQ13619 759 aa22.57■■□□□ 1.2
PSPC1-201ENST00000338910 SUCLG2Q96I99 432 aa22.57■■□□□ 1.2
PSPC1-201ENST00000338910 PA2G4Q9UQ80 394 aaKnown RBP22.56■■□□□ 1.2
PSPC1-201ENST00000338910 NEK4P51957 841 aa22.56■■□□□ 1.2
PSPC1-201ENST00000338910 NEXNQ0ZGT2 675 aa22.56■■□□□ 1.2
PSPC1-201ENST00000338910 HSP90AB4PQ58FF6 505 aa22.56■■□□□ 1.2
PSPC1-201ENST00000338910 ANKRD13DQ6ZTN6 518 aa22.56■■□□□ 1.2
PSPC1-201ENST00000338910 MAP4K4O95819 1239 aaPredicted RBP22.55■■□□□ 1.2
PSPC1-201ENST00000338910 MCM2P49736 904 aa22.55■■□□□ 1.2
PSPC1-201ENST00000338910 LRP10Q7Z4F1 713 aa22.55■■□□□ 1.2
PSPC1-201ENST00000338910 SYAP1Q96A49 352 aaPredicted RBP22.55■■□□□ 1.2
PSPC1-201ENST00000338910 KAZALD1Q96I82 304 aa22.55■■□□□ 1.2
PSPC1-201ENST00000338910 MYD88Q99836 296 aa22.55■■□□□ 1.2
PSPC1-201ENST00000338910 HDAC5Q9UQL6 1122 aa22.55■■□□□ 1.2
PSPC1-201ENST00000338910 PTCD1O75127 700 aaKnown RBP22.54■■□□□ 1.2
PSPC1-201ENST00000338910 CHMLP26374 656 aa22.54■■□□□ 1.2
PSPC1-201ENST00000338910 BICC1Q9H694 974 aaKnown RBP22.54■■□□□ 1.2
PSPC1-201ENST00000338910 PRIMPOLQ96LW4 560 aa22.53■■□□□ 1.2
PSPC1-201ENST00000338910 ESYT1Q9BSJ8 1104 aa22.53■■□□□ 1.2
PSPC1-201ENST00000338910 NEURL1BA8MQ27 555 aa22.53■■□□□ 1.2
PSPC1-201ENST00000338910 METTL22Q9BUU2 404 aaPredicted RBP22.53■■□□□ 1.2
PSPC1-201ENST00000338910 COL14A1Q05707 1796 aaKnown RBP22.53■■□□□ 1.2
PSPC1-201ENST00000338910 ADAMTS2O95450 1211 aa22.52■■□□□ 1.2
PSPC1-201ENST00000338910 PIBF1Q8WXW3 757 aa22.52■■□□□ 1.2
PSPC1-201ENST00000338910 GLI3P10071 1580 aa22.52■■□□□ 1.2
PSPC1-201ENST00000338910 UTYO14607 1347 aa22.52■■□□□ 1.2
PSPC1-201ENST00000338910 AOX1Q06278 1338 aa22.52■■□□□ 1.2
PSPC1-201ENST00000338910 PIP4K2BP78356 416 aa22.52■■□□□ 1.2
PSPC1-201ENST00000338910 JARID2Q92833 1246 aaPredicted RBP22.52■■□□□ 1.2
PSPC1-201ENST00000338910 INTS4Q96HW7 963 aaKnown RBP22.52■■□□□ 1.2
PSPC1-201ENST00000338910 COL22A1Q8NFW1 1626 aaPredicted RBP22.52■■□□□ 1.19
PSPC1-201ENST00000338910 GTF2F1P35269 517 aaKnown RBP eCLIP22.51■■□□□ 1.19
PSPC1-201ENST00000338910 GCKRQ14397 625 aa22.51■■□□□ 1.19
PSPC1-201ENST00000338910 PI4K2BQ8TCG2 481 aa22.51■■□□□ 1.19
PSPC1-201ENST00000338910 COL16A1Q07092 1604 aaPredicted RBP22.51■■□□□ 1.19
PSPC1-201ENST00000338910 PHF14O94880 888 aa22.51■■□□□ 1.19
PSPC1-201ENST00000338910 UVSSAQ2YD98 709 aa22.5■■□□□ 1.19
PSPC1-201ENST00000338910 FAM184AQ8NB25 1140 aa22.5■■□□□ 1.19
PSPC1-201ENST00000338910 PRDM10Q9NQV6 1147 aa22.5■■□□□ 1.19
PSPC1-201ENST00000338910 HMGN5P82970 282 aaKnown RBP22.5■■□□□ 1.19
PSPC1-201ENST00000338910 DNTTIP2Q5QJE6 756 aaKnown RBP22.5■■□□□ 1.19
PSPC1-201ENST00000338910 UTP14CQ5TAP6 766 aaKnown RBP22.5■■□□□ 1.19
PSPC1-201ENST00000338910 ZNF710Q8N1W2 664 aa22.5■■□□□ 1.19
PSPC1-201ENST00000338910 CLASRPQ8N2M8 674 aaKnown RBP22.5■■□□□ 1.19
PSPC1-201ENST00000338910 DMTNQ08495 405 aa22.49■■□□□ 1.19
PSPC1-201ENST00000338910 ANO2Q9NQ90 1003 aa22.49■■□□□ 1.19
PSPC1-201ENST00000338910 TMOD3Q9NYL9 352 aa22.49■■□□□ 1.19
PSPC1-201ENST00000338910 NBPF26B4DH59 902 aa22.48■■□□□ 1.19
PSPC1-201ENST00000338910 ATP5J2-PTCD1G3V325 749 aa22.48■■□□□ 1.19
PSPC1-201ENST00000338910 NOLC1Q14978 699 aaKnown RBP eCLIP22.48■■□□□ 1.19
PSPC1-201ENST00000338910 NBPF14Q5TI25 921 aa22.48■■□□□ 1.19
PSPC1-201ENST00000338910 NBPF10Q6P3W6 841 aaKnown RBP22.48■■□□□ 1.19
PSPC1-201ENST00000338910 NBPF15Q8N660 670 aa22.48■■□□□ 1.19
PSPC1-201ENST00000338910 GADD45BO75293 160 aaPredicted RBP22.48■■□□□ 1.19
PSPC1-201ENST00000338910 ZSCAN20P17040 1043 aaPredicted RBP22.48■■□□□ 1.19
PSPC1-201ENST00000338910 PHLPP1O60346 1717 aa22.47■■□□□ 1.19
PSPC1-201ENST00000338910 EPHA10Q5JZY3 1008 aa22.47■■□□□ 1.19
PSPC1-201ENST00000338910 KCPQ6ZWJ8 1503 aa22.47■■□□□ 1.19
PSPC1-201ENST00000338910 TOGARAM1Q9Y4F4 1720 aa22.47■■□□□ 1.19
PSPC1-201ENST00000338910 UBR2Q8IWV8 1755 aa22.47■■□□□ 1.19
PSPC1-201ENST00000338910 A1BGP04217 495 aa22.47■■□□□ 1.19
PSPC1-201ENST00000338910 KLHDC4Q8TBB5 520 aa22.47■■□□□ 1.19
PSPC1-201ENST00000338910 SIL1Q9H173 461 aa22.47■■□□□ 1.19
PSPC1-201ENST00000338910 DISP2A7MBM2 1401 aa22.46■■□□□ 1.19
PSPC1-201ENST00000338910 G3BP1Q13283 466 aaKnown RBP eCLIP22.46■■□□□ 1.19
PSPC1-201ENST00000338910 ZNF830Q96NB3 372 aaPredicted RBP22.46■■□□□ 1.19
PSPC1-201ENST00000338910 PALD1Q9ULE6 856 aa22.46■■□□□ 1.19
PSPC1-201ENST00000338910 NUTM2BA6NNL0 878 aaPredicted RBP22.46■■□□□ 1.19
PSPC1-201ENST00000338910 NUTM2EB1AL46 878 aaPredicted RBP22.46■■□□□ 1.19
PSPC1-201ENST00000338910 ANAPC15P60006 121 aa22.46■■□□□ 1.19
PSPC1-201ENST00000338910 ERC1Q8IUD2 1116 aa22.46■■□□□ 1.19
PSPC1-201ENST00000338910 NUTM2AQ8IVF1 878 aaPredicted RBP22.46■■□□□ 1.19
PSPC1-201ENST00000338910 PIGBQ92521 554 aa22.46■■□□□ 1.19
PSPC1-201ENST00000338910 TSC1Q92574 1164 aa22.46■■□□□ 1.19
PSPC1-201ENST00000338910 IL25Q9H293 177 aa22.46■■□□□ 1.19
PSPC1-201ENST00000338910 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.46■■□□□ 1.19
PSPC1-201ENST00000338910 KAT6BQ8WYB5 2073 aa22.45■■□□□ 1.18
PSPC1-201ENST00000338910 LAMB4A4D0S4 1761 aa22.45■■□□□ 1.18
PSPC1-201ENST00000338910 TUBGCP6Q96RT7 1819 aa22.45■■□□□ 1.18
PSPC1-201ENST00000338910 TOM1O60784 492 aa22.45■■□□□ 1.18
PSPC1-201ENST00000338910 IFIT2P09913 472 aaKnown RBP22.45■■□□□ 1.18
PSPC1-201ENST00000338910 GDPD2Q9HCC8 539 aa22.45■■□□□ 1.18
PSPC1-201ENST00000338910 SPTLC3Q9NUV7 552 aa22.45■■□□□ 1.18
PSPC1-201ENST00000338910 USP25Q9UHP3 1055 aa22.45■■□□□ 1.18
PSPC1-201ENST00000338910 ASAP1Q9ULH1 1129 aa22.45■■□□□ 1.18
PSPC1-201ENST00000338910 SASH1O94885 1247 aa22.45■■□□□ 1.18
PSPC1-201ENST00000338910 USP48Q86UV5 1035 aa22.45■■□□□ 1.18
PSPC1-201ENST00000338910 AACSQ86V21 672 aa22.45■■□□□ 1.18
PSPC1-201ENST00000338910 EXOC5O00471 708 aa22.44■■□□□ 1.18
PSPC1-201ENST00000338910 UBE3BQ7Z3V4 1068 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms