RNA–Protein interactions for RNA: ENST00000329231.8

ATPAF1-201, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2 BASIC

Gene ATPAF1, Length 1,241 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-201ENST00000329231 LMNB1P20700 586 aa35.63■■■■□ 3.29
ATPAF1-201ENST00000329231 NFKBIEO00221 500 aa35.62■■■■□ 3.29
ATPAF1-201ENST00000329231 GOLGA2Q08379 1002 aa35.61■■■■□ 3.29
ATPAF1-201ENST00000329231 SLX4Q8IY92 1834 aa35.61■■■■□ 3.29
ATPAF1-201ENST00000329231 TWISTNBQ3B726 338 aaPredicted RBP35.6■■■■□ 3.29
ATPAF1-201ENST00000329231 SLC10A5Q5PT55 438 aa35.6■■■■□ 3.29
ATPAF1-201ENST00000329231 RPGRQ92834 1020 aaKnown RBP35.6■■■■□ 3.29
ATPAF1-201ENST00000329231 PHAXQ9H814 394 aaKnown RBP35.6■■■■□ 3.29
ATPAF1-201ENST00000329231 ANKRD36CQ5JPF3 1778 aa35.6■■■■□ 3.29
ATPAF1-201ENST00000329231 TNRC6CQ9HCJ0 1690 aaKnown RBP35.59■■■■□ 3.29
ATPAF1-201ENST00000329231 ARFGEF2Q9Y6D5 1785 aa35.59■■■■□ 3.29
ATPAF1-201ENST00000329231 FANCIQ9NVI1 1328 aa35.58■■■■□ 3.29
ATPAF1-201ENST00000329231 RIC3Q7Z5B4 369 aa35.58■■■■□ 3.29
ATPAF1-201ENST00000329231 NLRP3Q96P20 1036 aa35.58■■■■□ 3.29
ATPAF1-201ENST00000329231 TRMT112Q9UI30 125 aaKnown RBP35.58■■■■□ 3.29
ATPAF1-201ENST00000329231 SBF1O95248 1867 aa35.57■■■■□ 3.28
ATPAF1-201ENST00000329231 C7orf43Q8WVR3 580 aa35.57■■■■□ 3.28
ATPAF1-201ENST00000329231 STK31Q9BXU1 1019 aa35.57■■■■□ 3.28
ATPAF1-201ENST00000329231 HOXA10P31260 410 aaPredicted RBP35.56■■■■□ 3.28
ATPAF1-201ENST00000329231 ISCA1Q9BUE6 129 aa35.56■■■■□ 3.28
ATPAF1-201ENST00000329231 TAOK3Q9H2K8 898 aa35.56■■■■□ 3.28
ATPAF1-201ENST00000329231 SH3TC1Q8TE82 1336 aa35.56■■■■□ 3.28
ATPAF1-201ENST00000329231 LTBP3Q9NS15 1303 aa35.56■■■■□ 3.28
ATPAF1-201ENST00000329231 ZC3H4Q9UPT8 1303 aaKnown RBP35.56■■■■□ 3.28
ATPAF1-201ENST00000329231 CACNA1SQ13698 1873 aa35.55■■■■□ 3.28
ATPAF1-201ENST00000329231 DDX58O95786 925 aaKnown RBP35.55■■■■□ 3.28
ATPAF1-201ENST00000329231 CCDC93Q567U6 631 aa35.55■■■■□ 3.28
ATPAF1-201ENST00000329231 RBM17Q96I25 401 aaKnown RBP35.55■■■■□ 3.28
ATPAF1-201ENST00000329231 PRELPP51888 382 aa35.54■■■■□ 3.28
ATPAF1-201ENST00000329231 ATP5J2-PTCD1G3V325 749 aa35.53■■■■□ 3.28
ATPAF1-201ENST00000329231 C1QTNF8P60827 252 aa35.53■■■■□ 3.28
ATPAF1-201ENST00000329231 TRIM28Q13263 835 aaKnown RBP35.52■■■■□ 3.28
ATPAF1-201ENST00000329231 C3orf67Q6ZVT6 689 aa35.52■■■■□ 3.28
ATPAF1-201ENST00000329231 CRAMP1Q96RY5 1269 aa35.52■■■■□ 3.28
ATPAF1-201ENST00000329231 MYH16Q9H6N6 1097 aa35.52■■■■□ 3.28
ATPAF1-201ENST00000329231 FER1L6Q2WGJ9 1857 aa35.52■■■■□ 3.28
ATPAF1-201ENST00000329231 CCER2I3L3R5 266 aa35.51■■■■□ 3.28
ATPAF1-201ENST00000329231 RTKN2Q8IZC4 609 aa35.5■■■■□ 3.27
ATPAF1-201ENST00000329231 HCLS1P14317 486 aaPredicted RBP35.49■■■■□ 3.27
ATPAF1-201ENST00000329231 SYNE4Q8N205 404 aa35.49■■■■□ 3.27
ATPAF1-201ENST00000329231 KDM2BQ8NHM5 1336 aa35.49■■■■□ 3.27
ATPAF1-201ENST00000329231 TCERG1O14776 1098 aaKnown RBP35.48■■■■□ 3.27
ATPAF1-201ENST00000329231 EXOSC9Q06265 439 aaKnown RBP35.48■■■■□ 3.27
ATPAF1-201ENST00000329231 SPINK5Q9NQ38 1064 aaPredicted RBP35.48■■■■□ 3.27
ATPAF1-201ENST00000329231 ZNF428Q96B54 188 aa35.47■■■■□ 3.27
ATPAF1-201ENST00000329231 SLC4A2P04920 1241 aa35.46■■■■□ 3.27
ATPAF1-201ENST00000329231 CC2D2BQ6DHV5 1058 aa35.46■■■■□ 3.27
ATPAF1-201ENST00000329231 MYD88Q99836 296 aa35.46■■■■□ 3.27
ATPAF1-201ENST00000329231 VAMP4O75379 141 aa35.45■■■■□ 3.27
ATPAF1-201ENST00000329231 FKBP4Q02790 459 aaKnown RBP eCLIP35.45■■■■□ 3.27
ATPAF1-201ENST00000329231 OLFM4Q6UX06 510 aa35.45■■■■□ 3.27
ATPAF1-201ENST00000329231 FAM89AQ96GI7 184 aa35.45■■■■□ 3.27
ATPAF1-201ENST00000329231 METTL22Q9BUU2 404 aaPredicted RBP35.45■■■■□ 3.27
ATPAF1-201ENST00000329231 ZNF521Q96K83 1311 aa35.44■■■■□ 3.26
ATPAF1-201ENST00000329231 KIF3CO14782 793 aa35.44■■■■□ 3.26
ATPAF1-201ENST00000329231 KSR2Q6VAB6 950 aa35.44■■■■□ 3.26
ATPAF1-201ENST00000329231 PPEF1O14829 653 aaPredicted RBP35.43■■■■□ 3.26
ATPAF1-201ENST00000329231 DIEXFQ68CQ4 756 aaKnown RBP35.43■■■■□ 3.26
ATPAF1-201ENST00000329231 NMRK2Q9NPI5 230 aa35.43■■■■□ 3.26
ATPAF1-201ENST00000329231 MAP3K2Q9Y2U5 619 aa35.43■■■■□ 3.26
ATPAF1-201ENST00000329231 CCDC88AQ3V6T2 1871 aa35.43■■■■□ 3.26
ATPAF1-201ENST00000329231 GRIPAP1Q4V328 841 aa35.42■■■■□ 3.26
ATPAF1-201ENST00000329231 CCDC191Q8NCU4 936 aa35.42■■■■□ 3.26
ATPAF1-201ENST00000329231 PI4KAP2A4QPH2 592 aa35.41■■■■□ 3.26
ATPAF1-201ENST00000329231 PI4KAP1Q8N8J0 262 aa35.41■■■■□ 3.26
ATPAF1-201ENST00000329231 GLTPD2A6NH11 291 aa35.4■■■■□ 3.26
ATPAF1-201ENST00000329231 DDX46Q7L014 1031 aaKnown RBP35.4■■■■□ 3.26
ATPAF1-201ENST00000329231 ZBTB38Q8NAP3 1195 aaPredicted RBP35.4■■■■□ 3.26
ATPAF1-201ENST00000329231 TMX4Q9H1E5 349 aaPredicted RBP35.4■■■■□ 3.26
ATPAF1-201ENST00000329231 ABCC4O15439 1325 aa35.39■■■■□ 3.26
ATPAF1-201ENST00000329231 G2E3Q7L622 706 aa35.39■■■■□ 3.26
ATPAF1-201ENST00000329231 CWC25Q9NXE8 425 aaPredicted RBP35.39■■■■□ 3.26
ATPAF1-201ENST00000329231 TIAM2Q8IVF5 1701 aa35.38■■■■□ 3.25
ATPAF1-201ENST00000329231 IRS4O14654 1257 aaPredicted RBP35.38■■■■□ 3.25
ATPAF1-201ENST00000329231 BBOX1O75936 387 aa35.38■■■■□ 3.25
ATPAF1-201ENST00000329231 HSP90B1P14625 803 aaKnown RBP35.38■■■■□ 3.25
ATPAF1-201ENST00000329231 RTL5Q5HYW3 569 aaPredicted RBP35.38■■■■□ 3.25
ATPAF1-201ENST00000329231 DPY19L2Q6NUT2 758 aa35.38■■■■□ 3.25
ATPAF1-201ENST00000329231 PSMD1Q99460 953 aa35.38■■■■□ 3.25
ATPAF1-201ENST00000329231 NEXNQ0ZGT2 675 aa35.37■■■■□ 3.25
ATPAF1-201ENST00000329231 FLIIQ13045 1269 aa35.37■■■■□ 3.25
ATPAF1-201ENST00000329231 ZNF277Q9NRM2 450 aaPredicted RBP35.37■■■■□ 3.25
ATPAF1-201ENST00000329231 DICER1Q9UPY3 1922 aaKnown RBP35.36■■■■□ 3.25
ATPAF1-201ENST00000329231 ATP6V0A2Q9Y487 856 aa35.36■■■■□ 3.25
ATPAF1-201ENST00000329231 SNED1Q8TER0 1413 aa35.35■■■■□ 3.25
ATPAF1-201ENST00000329231 PCCAP05165 728 aaPredicted RBP35.35■■■■□ 3.25
ATPAF1-201ENST00000329231 SF3B3Q15393 1217 aaKnown RBP35.35■■■■□ 3.25
ATPAF1-201ENST00000329231 LAMB2P55268 1798 aa35.35■■■■□ 3.25
ATPAF1-201ENST00000329231 GRAPQ13588 217 aa35.34■■■■□ 3.25
ATPAF1-201ENST00000329231 GRAPLQ8TC17 118 aaPredicted RBP35.34■■■■□ 3.25
ATPAF1-201ENST00000329231 RRAGCQ9HB90 399 aa35.34■■■■□ 3.25
ATPAF1-201ENST00000329231 FKBP5Q13451 457 aaPredicted RBP35.33■■■■□ 3.25
ATPAF1-201ENST00000329231 DDX60Q8IY21 1712 aaKnown RBP35.32■■■■□ 3.25
ATPAF1-201ENST00000329231 TOMM70O94826 608 aa35.32■■■■□ 3.24
ATPAF1-201ENST00000329231 IARSP41252 1262 aaKnown RBP35.32■■■■□ 3.24
ATPAF1-201ENST00000329231 C16orf71Q8IYS4 520 aaPredicted RBP35.32■■■■□ 3.24
ATPAF1-201ENST00000329231 E9PSI1 815 aa35.31■■■■□ 3.24
ATPAF1-201ENST00000329231 IGKV5-2P06315 115 aa35.31■■■■□ 3.24
ATPAF1-201ENST00000329231 TMC4Q7Z404 712 aa35.3■■■■□ 3.24
ATPAF1-201ENST00000329231 SP8Q8IXZ3 490 aa35.3■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms