RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 AK7Q96M32 723 aa13.95□□□□□ -0.18
SHMT2-201ENST00000328923 UBXN6Q9BZV1 441 aa13.95□□□□□ -0.18
SHMT2-201ENST00000328923 TERF2IPQ9NYB0 399 aa13.95□□□□□ -0.18
SHMT2-201ENST00000328923 CCDC196A0A1B0GTZ2 297 aa13.95□□□□□ -0.18
SHMT2-201ENST00000328923 SEC31AO94979 1220 aaKnown RBP13.95□□□□□ -0.18
SHMT2-201ENST00000328923 PTPN14Q15678 1187 aa13.95□□□□□ -0.18
SHMT2-201ENST00000328923 RBM28Q9NW13 759 aaKnown RBP13.95□□□□□ -0.18
SHMT2-201ENST00000328923 ARHGAP29Q52LW3 1261 aa13.94□□□□□ -0.18
SHMT2-201ENST00000328923 CACTINQ8WUQ7 758 aaKnown RBP13.94□□□□□ -0.18
SHMT2-201ENST00000328923 TCHHQ07283 1943 aa13.94□□□□□ -0.18
SHMT2-201ENST00000328923 PNPLA6Q8IY17 1366 aa13.94□□□□□ -0.18
SHMT2-201ENST00000328923 NBPF9Q3BBW0 867 aa13.94□□□□□ -0.18
SHMT2-201ENST00000328923 CASC1Q6TDU7 716 aa13.94□□□□□ -0.18
SHMT2-201ENST00000328923 TMCO3Q6UWJ1 677 aa13.94□□□□□ -0.18
SHMT2-201ENST00000328923 MRPL50Q8N5N7 158 aaKnown RBP13.94□□□□□ -0.18
SHMT2-201ENST00000328923 ZSCAN16Q9H4T2 348 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-201ENST00000328923 PDRG1Q9NUG6 133 aa13.94□□□□□ -0.18
SHMT2-201ENST00000328923 ZNF335Q9H4Z2 1342 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-201ENST00000328923 PLEKHG1Q9ULL1 1385 aa13.93□□□□□ -0.18
SHMT2-201ENST00000328923 TECPR2O15040 1411 aa13.93□□□□□ -0.18
SHMT2-201ENST00000328923 LRRC7Q96NW7 1537 aa13.93□□□□□ -0.18
SHMT2-201ENST00000328923 INHBEP58166 350 aa13.93□□□□□ -0.18
SHMT2-201ENST00000328923 C11orf91Q3C1V1 193 aa13.93□□□□□ -0.18
SHMT2-201ENST00000328923 NYAP1Q6ZVC0 841 aa13.93□□□□□ -0.18
SHMT2-201ENST00000328923 NBPF11Q86T75 865 aa13.93□□□□□ -0.18
SHMT2-201ENST00000328923 THEMISQ8N1K5 641 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-201ENST00000328923 JMYQ8N9B5 988 aa13.93□□□□□ -0.18
SHMT2-201ENST00000328923 LTKP29376 864 aa13.93□□□□□ -0.18
SHMT2-201ENST00000328923 CWC27Q6UX04 472 aaKnown RBP13.93□□□□□ -0.18
SHMT2-201ENST00000328923 CCDC34Q96HJ3 373 aa13.93□□□□□ -0.18
SHMT2-201ENST00000328923 CABP1Q9NZU7 370 aa13.93□□□□□ -0.18
SHMT2-201ENST00000328923 SASH3O75995 380 aa13.92□□□□□ -0.18
SHMT2-201ENST00000328923 CLSTN1O94985 981 aa13.92□□□□□ -0.18
SHMT2-201ENST00000328923 CORO7P57737 925 aa13.92□□□□□ -0.18
SHMT2-201ENST00000328923 SMC1AQ14683 1233 aaKnown RBP13.92□□□□□ -0.18
SHMT2-201ENST00000328923 TTC19Q6DKK2 380 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-201ENST00000328923 TXNDC2Q86VQ3 553 aa13.92□□□□□ -0.18
SHMT2-201ENST00000328923 ADAM21Q9UKJ8 722 aa13.92□□□□□ -0.18
SHMT2-201ENST00000328923 CPS1P31327 1500 aa13.92□□□□□ -0.18
SHMT2-201ENST00000328923 MCM2P49736 904 aa13.92□□□□□ -0.18
SHMT2-201ENST00000328923 DCTPP1Q9H773 170 aa13.92□□□□□ -0.18
SHMT2-201ENST00000328923 FAM135BQ49AJ0 1406 aa13.92□□□□□ -0.18
SHMT2-201ENST00000328923 ADAMTS13Q76LX8 1427 aa13.92□□□□□ -0.18
SHMT2-201ENST00000328923 IVLP07476 585 aa13.91□□□□□ -0.18
SHMT2-201ENST00000328923 TRDNQ13061 729 aa13.91□□□□□ -0.18
SHMT2-201ENST00000328923 LEKR1Q6ZMV7 388 aa13.91□□□□□ -0.18
SHMT2-201ENST00000328923 HDGFL2Q7Z4V5 671 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-201ENST00000328923 EXOC4Q96A65 974 aa13.91□□□□□ -0.18
SHMT2-201ENST00000328923 TRMT1Q9NXH9 659 aaKnown RBP13.91□□□□□ -0.18
SHMT2-201ENST00000328923 FBXO3Q9UK99 471 aa13.91□□□□□ -0.18
SHMT2-201ENST00000328923 CCDC171Q6TFL3 1326 aa13.91□□□□□ -0.18
SHMT2-201ENST00000328923 FYB1O15117 783 aa13.91□□□□□ -0.18
SHMT2-201ENST00000328923 GGNBP2Q9H3C7 697 aa13.91□□□□□ -0.18
SHMT2-201ENST00000328923 KLHL33A6NCF5 533 aa13.9□□□□□ -0.18
SHMT2-201ENST00000328923 CCDC144BQ3MJ40 725 aa13.9□□□□□ -0.18
SHMT2-201ENST00000328923 CCDC144CPQ8IYA2 1237 aa13.9□□□□□ -0.18
SHMT2-201ENST00000328923 TMX3Q96JJ7 454 aa13.9□□□□□ -0.18
SHMT2-201ENST00000328923 PSD3Q9NYI0 1048 aa13.9□□□□□ -0.18
SHMT2-201ENST00000328923 ATP7BP35670 1465 aa13.9□□□□□ -0.18
SHMT2-201ENST00000328923 WASLO00401 505 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-201ENST00000328923 VAMP4O75379 141 aa13.9□□□□□ -0.18
SHMT2-201ENST00000328923 FCHSD2O94868 740 aa13.9□□□□□ -0.18
SHMT2-201ENST00000328923 CPP00450 1065 aa13.9□□□□□ -0.18
SHMT2-201ENST00000328923 CASTP20810 708 aaKnown RBP13.9□□□□□ -0.18
SHMT2-201ENST00000328923 SSR1P43307 286 aaKnown RBP13.9□□□□□ -0.18
SHMT2-201ENST00000328923 LUZP1Q86V48 1076 aa13.9□□□□□ -0.18
SHMT2-201ENST00000328923 DNAAF4Q8WXU2 420 aa13.9□□□□□ -0.18
SHMT2-201ENST00000328923 API5Q9BZZ5 524 aaKnown RBP13.9□□□□□ -0.18
SHMT2-201ENST00000328923 C1orf115Q9H7X2 142 aa13.9□□□□□ -0.18
SHMT2-201ENST00000328923 KIF20BQ96Q89 1820 aa13.9□□□□□ -0.18
SHMT2-201ENST00000328923 DIP2AQ14689 1571 aa13.89□□□□□ -0.19
SHMT2-201ENST00000328923 MPHOSPH10O00566 681 aaKnown RBP13.89□□□□□ -0.19
SHMT2-201ENST00000328923 MNAT1P51948 309 aa13.89□□□□□ -0.19
SHMT2-201ENST00000328923 NAIF1Q69YI7 327 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-201ENST00000328923 CNPY2Q9Y2B0 182 aa13.89□□□□□ -0.19
SHMT2-201ENST00000328923 H0YHG0 523 aa13.89□□□□□ -0.19
SHMT2-201ENST00000328923 SARNPP82979 210 aaKnown RBP13.89□□□□□ -0.19
SHMT2-201ENST00000328923 ARID5BQ14865 1188 aa13.89□□□□□ -0.19
SHMT2-201ENST00000328923 SLC24A3Q9HC58 644 aa13.89□□□□□ -0.19
SHMT2-201ENST00000328923 KIF3CO14782 793 aa13.88□□□□□ -0.19
SHMT2-201ENST00000328923 DIAPH1O60610 1272 aaKnown RBP13.88□□□□□ -0.19
SHMT2-201ENST00000328923 TBC1D8O95759 1140 aa13.88□□□□□ -0.19
SHMT2-201ENST00000328923 CALRP27797 417 aaKnown RBP13.88□□□□□ -0.19
SHMT2-201ENST00000328923 PLEKHO1Q53GL0 409 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-201ENST00000328923 INTS4Q96HW7 963 aaKnown RBP13.88□□□□□ -0.19
SHMT2-201ENST00000328923 ARGLU1Q9NWB6 273 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-201ENST00000328923 EID1Q9Y6B2 187 aa13.88□□□□□ -0.19
SHMT2-201ENST00000328923 TTC36A6NLP5 189 aa13.88□□□□□ -0.19
SHMT2-201ENST00000328923 KIF2AO00139 706 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-201ENST00000328923 CUL4AQ13619 759 aa13.88□□□□□ -0.19
SHMT2-201ENST00000328923 ZKSCAN8Q15776 578 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-201ENST00000328923 NBPF6Q5VWK0 638 aa13.88□□□□□ -0.19
SHMT2-201ENST00000328923 ILDR2Q71H61 639 aa13.88□□□□□ -0.19
SHMT2-201ENST00000328923 NBPF5PQ86XG9 351 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-201ENST00000328923 TBC1D22AQ8WUA7 517 aa13.88□□□□□ -0.19
SHMT2-201ENST00000328923 FAXDC2Q96IV6 333 aa13.88□□□□□ -0.19
SHMT2-201ENST00000328923 NBPF4Q96M43 638 aa13.88□□□□□ -0.19
SHMT2-201ENST00000328923 SRRTQ9BXP5 876 aaKnown RBP13.88□□□□□ -0.19
SHMT2-201ENST00000328923 SMC2O95347 1197 aa13.87□□□□□ -0.19
SHMT2-201ENST00000328923 ZNF75DP51815 510 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms