RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 DDX54Q8TDD1 881 aaKnown RBP18.24■□□□□ 0.51
DDX56-201ENST00000258772 SNRKQ9NRH2 765 aa18.24■□□□□ 0.51
DDX56-201ENST00000258772 FIBPO43427 364 aa18.24■□□□□ 0.51
DDX56-201ENST00000258772 ST3GAL1Q11201 340 aa18.24■□□□□ 0.51
DDX56-201ENST00000258772 HSP90AA2PQ14568 343 aaPredicted RBP18.24■□□□□ 0.51
DDX56-201ENST00000258772 LARP1Q6PKG0 1096 aaKnown RBP18.24■□□□□ 0.51
DDX56-201ENST00000258772 RGPD5Q99666 1765 aa18.24■□□□□ 0.51
DDX56-201ENST00000258772 KCNJ4P48050 445 aa18.23■□□□□ 0.51
DDX56-201ENST00000258772 ZNF790Q6PG37 636 aa18.23■□□□□ 0.51
DDX56-201ENST00000258772 TLR7Q9NYK1 1049 aaKnown RBP18.23■□□□□ 0.51
DDX56-201ENST00000258772 DTNBO60941 627 aa18.23■□□□□ 0.51
DDX56-201ENST00000258772 SLC39A6Q13433 755 aa18.23■□□□□ 0.51
DDX56-201ENST00000258772 TPRNQ4KMQ1 711 aa18.23■□□□□ 0.51
DDX56-201ENST00000258772 SIL1Q9H173 461 aa18.23■□□□□ 0.51
DDX56-201ENST00000258772 BOLA2Q9H3K6 86 aa18.23■□□□□ 0.51
DDX56-201ENST00000258772 LMTK3Q96Q04 1460 aa18.23■□□□□ 0.51
DDX56-201ENST00000258772 DNM1Q05193 864 aaKnown RBP18.22■□□□□ 0.51
DDX56-201ENST00000258772 CSPP1Q1MSJ5 1256 aa18.22■□□□□ 0.51
DDX56-201ENST00000258772 KRT28Q7Z3Y7 464 aa18.22■□□□□ 0.51
DDX56-201ENST00000258772 ZNF142P52746 1687 aaPredicted RBP18.22■□□□□ 0.51
DDX56-201ENST00000258772 SLC27A2O14975 620 aa18.22■□□□□ 0.51
DDX56-201ENST00000258772 PSMA5P28066 241 aa18.22■□□□□ 0.51
DDX56-201ENST00000258772 NEXNQ0ZGT2 675 aa18.22■□□□□ 0.51
DDX56-201ENST00000258772 NECAB1Q8N987 351 aa18.22■□□□□ 0.51
DDX56-201ENST00000258772 KLHDC4Q8TBB5 520 aa18.22■□□□□ 0.51
DDX56-201ENST00000258772 UBE2Q2Q8WVN8 375 aa18.22■□□□□ 0.51
DDX56-201ENST00000258772 TPCN1Q9ULQ1 816 aa18.22■□□□□ 0.51
DDX56-201ENST00000258772 ERBB3P21860 1342 aa18.22■□□□□ 0.51
DDX56-201ENST00000258772 A0A0D9SFI3 127 aa18.21■□□□□ 0.51
DDX56-201ENST00000258772 NEURL1BA8MQ27 555 aa18.21■□□□□ 0.51
DDX56-201ENST00000258772 PTMAP06454 111 aaKnown RBP18.21■□□□□ 0.51
DDX56-201ENST00000258772 R3HCC1Q9Y3T6 440 aaKnown RBP18.21■□□□□ 0.51
DDX56-201ENST00000258772 TRPM3Q9HCF6 1732 aaPredicted RBP18.21■□□□□ 0.51
DDX56-201ENST00000258772 MYL6BP14649 208 aa18.21■□□□□ 0.51
DDX56-201ENST00000258772 GCKRQ14397 625 aa18.21■□□□□ 0.51
DDX56-201ENST00000258772 FSD1Q9BTV5 496 aa18.21■□□□□ 0.51
DDX56-201ENST00000258772 SLC52A2Q9HAB3 445 aa18.21■□□□□ 0.51
DDX56-201ENST00000258772 COL9A3Q14050 684 aaPredicted RBP18.2■□□□□ 0.5
DDX56-201ENST00000258772 EPHA10Q5JZY3 1008 aa18.2■□□□□ 0.5
DDX56-201ENST00000258772 COPS6Q7L5N1 327 aa18.2■□□□□ 0.5
DDX56-201ENST00000258772 KLHL34Q8N239 644 aa18.2■□□□□ 0.5
DDX56-201ENST00000258772 XAGE3Q8WTP9 111 aa18.2■□□□□ 0.5
DDX56-201ENST00000258772 METTL22Q9BUU2 404 aaPredicted RBP18.2■□□□□ 0.5
DDX56-201ENST00000258772 VPS37CA5D8V6 355 aaPredicted RBP18.19■□□□□ 0.5
DDX56-201ENST00000258772 HCLS1P14317 486 aaPredicted RBP18.19■□□□□ 0.5
DDX56-201ENST00000258772 RNF20Q5VTR2 975 aa18.19■□□□□ 0.5
DDX56-201ENST00000258772 NFATC2IPQ8NCF5 419 aa18.19■□□□□ 0.5
DDX56-201ENST00000258772 RAPGEF4Q8WZA2 1011 aa18.19■□□□□ 0.5
DDX56-201ENST00000258772 C5P01031 1676 aa18.19■□□□□ 0.5
DDX56-201ENST00000258772 SCN11AQ9UI33 1791 aa18.19■□□□□ 0.5
DDX56-201ENST00000258772 PDIA4P13667 645 aaKnown RBP18.18■□□□□ 0.5
DDX56-201ENST00000258772 ZC3H6P61129 1189 aaKnown RBP18.18■□□□□ 0.5
DDX56-201ENST00000258772 LARP1BQ659C4 914 aaKnown RBP18.18■□□□□ 0.5
DDX56-201ENST00000258772 MYD88Q99836 296 aa18.18■□□□□ 0.5
DDX56-201ENST00000258772 USP25Q9UHP3 1055 aa18.18■□□□□ 0.5
DDX56-201ENST00000258772 NPHP3Q7Z494 1330 aa18.18■□□□□ 0.5
DDX56-201ENST00000258772 MED23Q9ULK4 1368 aa18.18■□□□□ 0.5
DDX56-201ENST00000258772 NPHP4O75161 1426 aaPredicted RBP18.18■□□□□ 0.5
DDX56-201ENST00000258772 BLOC1S2Q6QNY1 142 aa18.18■□□□□ 0.5
DDX56-201ENST00000258772 FUCA2Q9BTY2 467 aa18.18■□□□□ 0.5
DDX56-201ENST00000258772 ALDH8A1Q9H2A2 487 aaPredicted RBP18.18■□□□□ 0.5
DDX56-201ENST00000258772 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.18■□□□□ 0.5
DDX56-201ENST00000258772 KDM6AO15550 1401 aaPredicted RBP18.17■□□□□ 0.5
DDX56-201ENST00000258772 ANKRD1Q15327 319 aa18.17■□□□□ 0.5
DDX56-201ENST00000258772 ANKRD13DQ6ZTN6 518 aa18.17■□□□□ 0.5
DDX56-201ENST00000258772 COPRSQ9NQ92 184 aa18.17■□□□□ 0.5
DDX56-201ENST00000258772 MRC1P22897 1456 aa18.16■□□□□ 0.5
DDX56-201ENST00000258772 PHKG2P15735 406 aa18.16■□□□□ 0.5
DDX56-201ENST00000258772 RPS6KB1P23443 525 aa18.16■□□□□ 0.5
DDX56-201ENST00000258772 TSGA10IPQ3SY00 556 aa18.16■□□□□ 0.5
DDX56-201ENST00000258772 GIMAP6Q6P9H5 292 aa18.16■□□□□ 0.5
DDX56-201ENST00000258772 ZNF589Q86UQ0 364 aaPredicted RBP18.16■□□□□ 0.5
DDX56-201ENST00000258772 ZNF496Q96IT1 587 aaPredicted RBP18.16■□□□□ 0.5
DDX56-201ENST00000258772 NLRP2Q9NX02 1062 aa18.16■□□□□ 0.5
DDX56-201ENST00000258772 TAF6LQ9Y6J9 622 aa18.16■□□□□ 0.5
DDX56-201ENST00000258772 ADCY5O95622 1261 aa18.16■□□□□ 0.5
DDX56-201ENST00000258772 TCEANC2Q96MN5 208 aa18.16■□□□□ 0.5
DDX56-201ENST00000258772 JCADQ9P266 1359 aa18.15■□□□□ 0.5
DDX56-201ENST00000258772 TATP17735 454 aaPredicted RBP18.15■□□□□ 0.5
DDX56-201ENST00000258772 PDCP20941 246 aa18.15■□□□□ 0.5
DDX56-201ENST00000258772 LRP10Q7Z4F1 713 aa18.15■□□□□ 0.5
DDX56-201ENST00000258772 HMG20BQ9P0W2 317 aa18.15■□□□□ 0.5
DDX56-201ENST00000258772 USP16Q9Y5T5 823 aa18.15■□□□□ 0.5
DDX56-201ENST00000258772 TAF5LO75529 589 aa18.15■□□□□ 0.5
DDX56-201ENST00000258772 RFX5P48382 616 aaPredicted RBP18.15■□□□□ 0.5
DDX56-201ENST00000258772 TOB2Q14106 344 aaPredicted RBP18.15■□□□□ 0.5
DDX56-201ENST00000258772 EDC3Q96F86 508 aaKnown RBP18.15■□□□□ 0.5
DDX56-201ENST00000258772 KDM4AO75164 1064 aa18.14■□□□□ 0.49
DDX56-201ENST00000258772 ATP5JP18859 108 aa18.14■□□□□ 0.49
DDX56-201ENST00000258772 KRT85P78386 507 aa18.14■□□□□ 0.49
DDX56-201ENST00000258772 KIAA2012Q0VF49 1180 aa18.14■□□□□ 0.49
DDX56-201ENST00000258772 CDC37L1Q7L3B6 337 aa18.14■□□□□ 0.49
DDX56-201ENST00000258772 PTPN12Q05209 780 aaKnown RBP18.14■□□□□ 0.49
DDX56-201ENST00000258772 USPL1Q5W0Q7 1092 aa18.14■□□□□ 0.49
DDX56-201ENST00000258772 TTC6Q86TZ1 520 aa18.14■□□□□ 0.49
DDX56-201ENST00000258772 PROSER2Q86WR7 435 aaPredicted RBP18.14■□□□□ 0.49
DDX56-201ENST00000258772 JARID2Q92833 1246 aaPredicted RBP18.14■□□□□ 0.49
DDX56-201ENST00000258772 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.14■□□□□ 0.492e-6■□□□□ 10.5
DDX56-201ENST00000258772 DBNLQ9UJU6 430 aaKnown RBP18.14■□□□□ 0.49
DDX56-201ENST00000258772 MST1RQ04912 1400 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms