RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 SIL1Q9H173 461 aa12.17□□□□□ -0.46
COPB1-201ENST00000249923 ZSWIM6Q9HCJ5 1215 aa12.17□□□□□ -0.46
COPB1-201ENST00000249923 WDR33Q9C0J8 1336 aaKnown RBP12.17□□□□□ -0.46
COPB1-201ENST00000249923 ZC3H6P61129 1189 aaKnown RBP12.17□□□□□ -0.46
COPB1-201ENST00000249923 NMIQ13287 307 aaPredicted RBP12.17□□□□□ -0.46
COPB1-201ENST00000249923 ZNF589Q86UQ0 364 aaPredicted RBP12.17□□□□□ -0.46
COPB1-201ENST00000249923 DDX21Q9NR30 783 aaKnown RBP eCLIP12.17□□□□□ -0.46
COPB1-201ENST00000249923 CHMP3Q9Y3E7 222 aa12.17□□□□□ -0.46
COPB1-201ENST00000249923 C1orf167Q5SNV9 1468 aa12.17□□□□□ -0.46
COPB1-201ENST00000249923 STX6O43752 255 aa12.16□□□□□ -0.46
COPB1-201ENST00000249923 MST1RQ04912 1400 aa12.16□□□□□ -0.46
COPB1-201ENST00000249923 ZNF790Q6PG37 636 aa12.16□□□□□ -0.46
COPB1-201ENST00000249923 CCDC171Q6TFL3 1326 aa12.16□□□□□ -0.46
COPB1-201ENST00000249923 CCDC83Q8IWF9 413 aa12.16□□□□□ -0.46
COPB1-201ENST00000249923 JAKMIP1Q96N16 626 aaKnown RBP12.16□□□□□ -0.46
COPB1-201ENST00000249923 NDUFB9Q9Y6M9 179 aa12.16□□□□□ -0.46
COPB1-201ENST00000249923 SNRKQ9NRH2 765 aa12.16□□□□□ -0.46
COPB1-201ENST00000249923 TPCN1Q9ULQ1 816 aa12.16□□□□□ -0.46
COPB1-201ENST00000249923 MYL6BP14649 208 aa12.16□□□□□ -0.46
COPB1-201ENST00000249923 HSP90AB4PQ58FF6 505 aa12.16□□□□□ -0.46
COPB1-201ENST00000249923 NECAB1Q8N987 351 aa12.16□□□□□ -0.46
COPB1-201ENST00000249923 TCEANC2Q96MN5 208 aa12.16□□□□□ -0.46
COPB1-201ENST00000249923 DIAPH3Q9NSV4 1193 aa12.16□□□□□ -0.46
COPB1-201ENST00000249923 MTMR6Q9Y217 621 aa12.16□□□□□ -0.46
COPB1-201ENST00000249923 JCADQ9P266 1359 aa12.15□□□□□ -0.46
COPB1-201ENST00000249923 MED23Q9ULK4 1368 aa12.15□□□□□ -0.46
COPB1-201ENST00000249923 STRCP1A6NGW2 1772 aa12.15□□□□□ -0.46
COPB1-201ENST00000249923 ARFGEF2Q9Y6D5 1785 aa12.15□□□□□ -0.46
COPB1-201ENST00000249923 NEURL1BA8MQ27 555 aa12.15□□□□□ -0.46
COPB1-201ENST00000249923 F13A1P00488 732 aa12.15□□□□□ -0.46
COPB1-201ENST00000249923 NFATC2IPQ8NCF5 419 aa12.15□□□□□ -0.46
COPB1-201ENST00000249923 MAP4K1Q92918 833 aa12.15□□□□□ -0.46
COPB1-201ENST00000249923 NPHP3Q7Z494 1330 aa12.15□□□□□ -0.46
COPB1-201ENST00000249923 GJB2P29033 226 aa12.15□□□□□ -0.46
COPB1-201ENST00000249923 ZNF496Q96IT1 587 aaPredicted RBP12.15□□□□□ -0.46
COPB1-201ENST00000249923 RBM8AQ9Y5S9 174 aaKnown RBP12.15□□□□□ -0.46
COPB1-201ENST00000249923 AFDNP55196 1824 aaKnown RBP12.15□□□□□ -0.47
COPB1-201ENST00000249923 VPS53Q5VIR6 699 aa12.14□□□□□ -0.47
COPB1-201ENST00000249923 CREB3L3Q68CJ9 461 aa12.14□□□□□ -0.47
COPB1-201ENST00000249923 KRT28Q7Z3Y7 464 aa12.14□□□□□ -0.47
COPB1-201ENST00000249923 OFD1O75665 1012 aa12.14□□□□□ -0.47
COPB1-201ENST00000249923 IFIT2P09913 472 aaKnown RBP12.14□□□□□ -0.47
COPB1-201ENST00000249923 RFX5P48382 616 aaPredicted RBP12.14□□□□□ -0.47
COPB1-201ENST00000249923 HS1BP3Q53T59 392 aa12.14□□□□□ -0.47
COPB1-201ENST00000249923 EVI5LQ96CN4 794 aa12.14□□□□□ -0.47
COPB1-201ENST00000249923 BOLA2Q9H3K6 86 aa12.14□□□□□ -0.47
COPB1-201ENST00000249923 SLC52A2Q9HAB3 445 aa12.14□□□□□ -0.47
COPB1-201ENST00000249923 USP16Q9Y5T5 823 aa12.14□□□□□ -0.47
COPB1-201ENST00000249923 GCKRQ14397 625 aa12.14□□□□□ -0.47
COPB1-201ENST00000249923 XAGE3Q8WTP9 111 aa12.14□□□□□ -0.47
COPB1-201ENST00000249923 TSC1Q92574 1164 aa12.14□□□□□ -0.47
COPB1-201ENST00000249923 UQCRHLA0A096LP55 91 aa12.13□□□□□ -0.47
COPB1-201ENST00000249923 SLC27A2O14975 620 aa12.13□□□□□ -0.47
COPB1-201ENST00000249923 ZNF500O60304 480 aaPredicted RBP12.13□□□□□ -0.47
COPB1-201ENST00000249923 UQCRHP07919 91 aa12.13□□□□□ -0.47
COPB1-201ENST00000249923 PHKG2P15735 406 aa12.13□□□□□ -0.47
COPB1-201ENST00000249923 DNM1Q05193 864 aaKnown RBP12.13□□□□□ -0.47
COPB1-201ENST00000249923 FUCA2Q9BTY2 467 aa12.13□□□□□ -0.47
COPB1-201ENST00000249923 TSPY26PQ9H489 355 aa12.13□□□□□ -0.47
COPB1-201ENST00000249923 PDRG1Q9NUG6 133 aa12.13□□□□□ -0.47
COPB1-201ENST00000249923 KIF1AQ12756 1690 aa12.13□□□□□ -0.47
COPB1-201ENST00000249923 AP5Z1O43299 807 aa12.13□□□□□ -0.47
COPB1-201ENST00000249923 COPS6Q7L5N1 327 aa12.13□□□□□ -0.47
COPB1-201ENST00000249923 ZKSCAN5Q9Y2L8 839 aa12.13□□□□□ -0.47
COPB1-201ENST00000249923 CYP27B1O15528 508 aa12.13□□□□□ -0.47
COPB1-201ENST00000249923 FIBPO43427 364 aa12.13□□□□□ -0.47
COPB1-201ENST00000249923 ZNF830Q96NB3 372 aaPredicted RBP12.13□□□□□ -0.47
COPB1-201ENST00000249923 TM6SF1Q9BZW5 370 aa12.13□□□□□ -0.47
COPB1-201ENST00000249923 PKD1L3Q7Z443 1732 aa12.13□□□□□ -0.47
COPB1-201ENST00000249923 MAPK8IP2Q13387 824 aaPredicted RBP12.12□□□□□ -0.47
COPB1-201ENST00000249923 TOB2Q14106 344 aaPredicted RBP12.12□□□□□ -0.47
COPB1-201ENST00000249923 FAM173BQ6P4H8 233 aa12.12□□□□□ -0.47
COPB1-201ENST00000249923 CABLES1Q8TDN4 633 aa12.12□□□□□ -0.47
COPB1-201ENST00000249923 DBNLQ9UJU6 430 aaKnown RBP12.12□□□□□ -0.47
COPB1-201ENST00000249923 IGSF3O75054 1194 aa12.12□□□□□ -0.47
COPB1-201ENST00000249923 CDC37L1Q7L3B6 337 aa12.12□□□□□ -0.47
COPB1-201ENST00000249923 ERC1Q8IUD2 1116 aa12.12□□□□□ -0.47
COPB1-201ENST00000249923 MYD88Q99836 296 aa12.12□□□□□ -0.47
COPB1-201ENST00000249923 PTPN12Q05209 780 aaKnown RBP12.11□□□□□ -0.47
COPB1-201ENST00000249923 SMC3Q9UQE7 1217 aa12.11□□□□□ -0.47
COPB1-201ENST00000249923 TJP1Q07157 1748 aa12.11□□□□□ -0.47
COPB1-201ENST00000249923 SLFNL1Q499Z3 407 aa12.11□□□□□ -0.47
COPB1-201ENST00000249923 HCLS1P14317 486 aaPredicted RBP12.1□□□□□ -0.47
COPB1-201ENST00000249923 CASP7P55210 303 aa12.1□□□□□ -0.47
COPB1-201ENST00000249923 RIC3Q7Z5B4 369 aa12.1□□□□□ -0.47
COPB1-201ENST00000249923 METTL22Q9BUU2 404 aaPredicted RBP12.1□□□□□ -0.47
COPB1-201ENST00000249923 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.1□□□□□ -0.47
COPB1-201ENST00000249923 CYP46A1Q9Y6A2 500 aa12.1□□□□□ -0.47
COPB1-201ENST00000249923 ZNF609O15014 1411 aa12.1□□□□□ -0.47
COPB1-201ENST00000249923 SEC62Q99442 399 aaKnown RBP12.1□□□□□ -0.47
COPB1-201ENST00000249923 TRHP20396 242 aaPredicted RBP12.1□□□□□ -0.47
COPB1-201ENST00000249923 UBE2HP62256 183 aa12.1□□□□□ -0.47
COPB1-201ENST00000249923 LAMA4Q16363 1823 aa12.1□□□□□ -0.47
COPB1-201ENST00000249923 G3BP1Q13283 466 aaKnown RBP eCLIP12.09□□□□□ -0.473e-7■■■■□ 25.6
COPB1-201ENST00000249923 CCDC183Q5T5S1 534 aa12.09□□□□□ -0.47
COPB1-201ENST00000249923 GIMAP6Q6P9H5 292 aa12.09□□□□□ -0.47
COPB1-201ENST00000249923 RUFY2Q8WXA3 655 aa12.09□□□□□ -0.47
COPB1-201ENST00000249923 NLRP2Q9NX02 1062 aa12.09□□□□□ -0.47
COPB1-201ENST00000249923 USP25Q9UHP3 1055 aa12.09□□□□□ -0.47
COPB1-201ENST00000249923 NUP188Q5SRE5 1749 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 128.8 ms