RNA–Protein interactions for RNA: ENST00000193403.10

ACTN1-201, Transcript of actinin alpha 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ACTN1, Length 3,779 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-201ENST00000193403 PPRC1Q5VV67 1664 aaKnown RBP13.17□□□□□ -0.3
ACTN1-201ENST00000193403 MPRIPQ6WCQ1 1025 aa13.17□□□□□ -0.3
ACTN1-201ENST00000193403 KLHDC4Q8TBB5 520 aa13.17□□□□□ -0.3
ACTN1-201ENST00000193403 EDC3Q96F86 508 aaKnown RBP13.17□□□□□ -0.3
ACTN1-201ENST00000193403 LSG1Q9H089 658 aaKnown RBP13.17□□□□□ -0.3
ACTN1-201ENST00000193403 DDX19AQ9NUU7 478 aaKnown RBP13.17□□□□□ -0.3
ACTN1-201ENST00000193403 DIP2BQ9P265 1576 aa13.17□□□□□ -0.3
ACTN1-201ENST00000193403 VGLL3A8MV65 326 aa13.17□□□□□ -0.3
ACTN1-201ENST00000193403 POLR3GO15318 223 aaPredicted RBP13.17□□□□□ -0.3
ACTN1-201ENST00000193403 NR1I2O75469 434 aa13.17□□□□□ -0.3
ACTN1-201ENST00000193403 MNS1Q8NEH6 495 aa13.17□□□□□ -0.3
ACTN1-201ENST00000193403 HYPKQ9NX55 129 aa13.17□□□□□ -0.3
ACTN1-201ENST00000193403 ABCC3O15438 1527 aa13.16□□□□□ -0.3
ACTN1-201ENST00000193403 RPAP1Q9BWH6 1393 aaPredicted RBP13.16□□□□□ -0.3
ACTN1-201ENST00000193403 MRVI1Q9Y6F6 885 aa13.16□□□□□ -0.3
ACTN1-201ENST00000193403 ZNF75DP51815 510 aa13.16□□□□□ -0.3
ACTN1-201ENST00000193403 ELF2Q15723 593 aa13.16□□□□□ -0.3
ACTN1-201ENST00000193403 ZSCAN25Q6NSZ9 544 aa13.16□□□□□ -0.3
ACTN1-201ENST00000193403 NLRP2Q9NX02 1062 aa13.16□□□□□ -0.3
ACTN1-201ENST00000193403 EDC4Q6P2E9 1401 aaKnown RBP13.16□□□□□ -0.3
ACTN1-201ENST00000193403 SMTNL1A8MU46 457 aa13.16□□□□□ -0.3
ACTN1-201ENST00000193403 TAF7LQ5H9L4 462 aa13.15□□□□□ -0.3
ACTN1-201ENST00000193403 VPS53Q5VIR6 699 aa13.15□□□□□ -0.3
ACTN1-201ENST00000193403 TNNT3P45378 269 aaPredicted RBP13.15□□□□□ -0.3
ACTN1-201ENST00000193403 CCAR1Q8IX12 1150 aaKnown RBP13.15□□□□□ -0.3
ACTN1-201ENST00000193403 GTF3C6Q969F1 213 aa13.15□□□□□ -0.3
ACTN1-201ENST00000193403 MAP3K2Q9Y2U5 619 aa13.15□□□□□ -0.3
ACTN1-201ENST00000193403 CCDC69A6NI79 296 aa13.15□□□□□ -0.31
ACTN1-201ENST00000193403 TPM4P67936 248 aa13.15□□□□□ -0.31
ACTN1-201ENST00000193403 KIF18AQ8NI77 898 aa13.15□□□□□ -0.31
ACTN1-201ENST00000193403 CACTINQ8WUQ7 758 aaKnown RBP13.15□□□□□ -0.31
ACTN1-201ENST00000193403 ZNF215Q9UL58 517 aaPredicted RBP13.15□□□□□ -0.31
ACTN1-201ENST00000193403 KIAA1210Q9ULL0 1709 aa13.14□□□□□ -0.31
ACTN1-201ENST00000193403 CCDC171Q6TFL3 1326 aa13.14□□□□□ -0.31
ACTN1-201ENST00000193403 NCBP1Q09161 790 aaKnown RBP13.14□□□□□ -0.31
ACTN1-201ENST00000193403 ZNF530Q6P9A1 599 aaPredicted RBP13.14□□□□□ -0.31
ACTN1-201ENST00000193403 AOPEPQ8N6M6 819 aa13.14□□□□□ -0.31
ACTN1-201ENST00000193403 FSIP1Q8NA03 581 aa13.14□□□□□ -0.31
ACTN1-201ENST00000193403 LEO1Q8WVC0 666 aaPredicted RBP13.14□□□□□ -0.31
ACTN1-201ENST00000193403 ZFP91Q96JP5 570 aaPredicted RBP13.14□□□□□ -0.31
ACTN1-201ENST00000193403 BTBD11A6QL63 1104 aa13.14□□□□□ -0.31
ACTN1-201ENST00000193403 ANKRD1Q15327 319 aa13.14□□□□□ -0.31
ACTN1-201ENST00000193403 HSP90AA4PQ58FG1 418 aa13.14□□□□□ -0.31
ACTN1-201ENST00000193403 CHST3Q7LGC8 479 aa13.14□□□□□ -0.31
ACTN1-201ENST00000193403 CEP57L1Q8IYX8 460 aa13.14□□□□□ -0.31
ACTN1-201ENST00000193403 OGFRQ9NZT2 677 aa13.14□□□□□ -0.31
ACTN1-201ENST00000193403 KIAA0232Q92628 1395 aa13.14□□□□□ -0.31
ACTN1-201ENST00000193403 NPHP3Q7Z494 1330 aa13.14□□□□□ -0.31
ACTN1-201ENST00000193403 ARHGEF40Q8TER5 1519 aa13.14□□□□□ -0.31
ACTN1-201ENST00000193403 TMC6Q7Z403 805 aa13.14□□□□□ -0.31
ACTN1-201ENST00000193403 EVI5LQ96CN4 794 aa13.14□□□□□ -0.31
ACTN1-201ENST00000193403 FTOQ9C0B1 505 aaKnown RBP eCLIP13.14□□□□□ -0.31
ACTN1-201ENST00000193403 SETBP1Q9Y6X0 1596 aa13.13□□□□□ -0.31
ACTN1-201ENST00000193403 ZBTB22O15209 634 aa13.13□□□□□ -0.31
ACTN1-201ENST00000193403 ZC3H6P61129 1189 aaKnown RBP13.13□□□□□ -0.31
ACTN1-201ENST00000193403 STK38Q15208 465 aa13.13□□□□□ -0.31
ACTN1-201ENST00000193403 CCDC129Q6ZRS4 1044 aa13.13□□□□□ -0.31
ACTN1-201ENST00000193403 KRT222Q8N1A0 295 aa13.13□□□□□ -0.31
ACTN1-201ENST00000193403 PDILTQ8N807 584 aa13.13□□□□□ -0.31
ACTN1-201ENST00000193403 STAP2Q9UGK3 403 aa13.13□□□□□ -0.31
ACTN1-201ENST00000193403 CAMSAP1Q5T5Y3 1602 aa13.13□□□□□ -0.31
ACTN1-201ENST00000193403 NRXN1Q9ULB1 1477 aa13.13□□□□□ -0.31
ACTN1-201ENST00000193403 CCDC66A2RUB6 948 aa13.13□□□□□ -0.31
ACTN1-201ENST00000193403 KIF20AO95235 890 aa13.13□□□□□ -0.31
ACTN1-201ENST00000193403 METP08581 1390 aa13.13□□□□□ -0.31
ACTN1-201ENST00000193403 KCNQ3O43525 872 aa13.12□□□□□ -0.31
ACTN1-201ENST00000193403 GTF2F1P35269 517 aaKnown RBP eCLIP13.12□□□□□ -0.31
ACTN1-201ENST00000193403 PI4K2BQ8TCG2 481 aa13.12□□□□□ -0.31
ACTN1-201ENST00000193403 SSH3Q8TE77 659 aa13.12□□□□□ -0.31
ACTN1-201ENST00000193403 CHMP4CQ96CF2 233 aa13.12□□□□□ -0.31
ACTN1-201ENST00000193403 CFAP45Q9UL16 551 aa13.12□□□□□ -0.31
ACTN1-201ENST00000193403 NEXNQ0ZGT2 675 aa13.12□□□□□ -0.31
ACTN1-201ENST00000193403 SPTLC3Q9NUV7 552 aa13.12□□□□□ -0.31
ACTN1-201ENST00000193403 PAXBP1Q9Y5B6 917 aa13.12□□□□□ -0.31
ACTN1-201ENST00000193403 SLC27A2O14975 620 aa13.12□□□□□ -0.31
ACTN1-201ENST00000193403 ATP2B1P20020 1258 aa13.12□□□□□ -0.31
ACTN1-201ENST00000193403 POLR3DP05423 398 aaPredicted RBP13.11□□□□□ -0.31
ACTN1-201ENST00000193403 Q6ZUG5 572 aa13.11□□□□□ -0.31
ACTN1-201ENST00000193403 ERC1Q8IUD2 1116 aa13.11□□□□□ -0.31
ACTN1-201ENST00000193403 CPLX1O14810 134 aa13.11□□□□□ -0.31
ACTN1-201ENST00000193403 APPP05067 770 aa13.11□□□□□ -0.31
ACTN1-201ENST00000193403 UTP14CQ5TAP6 766 aaKnown RBP13.11□□□□□ -0.31
ACTN1-201ENST00000193403 DDX46Q7L014 1031 aaKnown RBP13.11□□□□□ -0.31
ACTN1-201ENST00000193403 IL17REQ8NFR9 667 aa13.11□□□□□ -0.31
ACTN1-201ENST00000193403 TTC14Q96N46 770 aa13.11□□□□□ -0.31
ACTN1-201ENST00000193403 NAT10Q9H0A0 1025 aaKnown RBP13.11□□□□□ -0.31
ACTN1-201ENST00000193403 A0A0D9SFI3 127 aa13.11□□□□□ -0.31
ACTN1-201ENST00000193403 URI1O94763 535 aaPredicted RBP13.11□□□□□ -0.31
ACTN1-201ENST00000193403 SNW1Q13573 536 aaKnown RBP13.11□□□□□ -0.31
ACTN1-201ENST00000193403 FEZ1Q99689 392 aa13.11□□□□□ -0.31
ACTN1-201ENST00000193403 PRR36Q9H6K5 1346 aa13.11□□□□□ -0.31
ACTN1-201ENST00000193403 USP27XA6NNY8 438 aa13.1□□□□□ -0.31
ACTN1-201ENST00000193403 HIP1O00291 1037 aa13.1□□□□□ -0.31
ACTN1-201ENST00000193403 SFPQP23246 707 aaKnown RBP eCLIP13.1□□□□□ -0.317e-7■■■■□ 21
ACTN1-201ENST00000193403 CCDC144BQ3MJ40 725 aa13.1□□□□□ -0.31
ACTN1-201ENST00000193403 SYT10Q6XYQ8 523 aa13.1□□□□□ -0.31
ACTN1-201ENST00000193403 CCDC144CPQ8IYA2 1237 aa13.1□□□□□ -0.31
ACTN1-201ENST00000193403 TMEM87AQ8NBN3 555 aa13.1□□□□□ -0.31
ACTN1-201ENST00000193403 CLSTN2Q9H4D0 955 aa13.1□□□□□ -0.31
ACTN1-201ENST00000193403 HDAC5Q9UQL6 1122 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms