RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Usp37Q8C0R0 979 aa13.6□□□□□ -0.23
Trim56-201ENSMUST00000054384 Ssx2ipQ8VC66 615 aa13.6□□□□□ -0.23
Trim56-201ENSMUST00000054384 Ppp1r15aP17564 657 aa13.6□□□□□ -0.23
Trim56-201ENSMUST00000054384 Tubb4bP68372 445 aaKnown RBP13.6□□□□□ -0.23
Trim56-201ENSMUST00000054384 Ift74Q8BKE9 600 aa13.6□□□□□ -0.23
Trim56-201ENSMUST00000054384 Vps16Q920Q4 839 aa13.6□□□□□ -0.23
Trim56-201ENSMUST00000054384 Map3k1P53349 1493 aa13.6□□□□□ -0.23
Trim56-201ENSMUST00000054384 Klc3Q91W40 508 aa13.6□□□□□ -0.23
Trim56-201ENSMUST00000054384 Srgap1Q91Z69 1062 aa13.6□□□□□ -0.23
Trim56-201ENSMUST00000054384 Gm28510A0A087WP28 240 aa13.6□□□□□ -0.23
Trim56-201ENSMUST00000054384 Tex35Q14BK3 207 aa13.6□□□□□ -0.23
Trim56-201ENSMUST00000054384 Rapgef3Q8VCC8 918 aa13.6□□□□□ -0.23
Trim56-201ENSMUST00000054384 NpcdF8VQB8 469 aa13.59□□□□□ -0.23
Trim56-201ENSMUST00000054384 Epb41l2O70318 988 aaKnown RBP13.59□□□□□ -0.23
Trim56-201ENSMUST00000054384 Exoc1Q8R3S6 894 aa13.59□□□□□ -0.23
Trim56-201ENSMUST00000054384 Egfem1Q8C088 590 aa13.59□□□□□ -0.23
Trim56-201ENSMUST00000054384 NexmifQ5DTT1 1515 aa13.59□□□□□ -0.23
Trim56-201ENSMUST00000054384 Tagap1P0CAX8 505 aa13.59□□□□□ -0.23
Trim56-201ENSMUST00000054384 Fgfr1opQ66JX5 399 aa13.59□□□□□ -0.23
Trim56-201ENSMUST00000054384 Bcar3Q9QZK2 820 aa13.59□□□□□ -0.23
Trim56-201ENSMUST00000054384 FerP70451 823 aa13.59□□□□□ -0.23
Trim56-201ENSMUST00000054384 Urb2E9Q7L1 1524 aaKnown RBP13.59□□□□□ -0.23
Trim56-201ENSMUST00000054384 Kiaa1211Q5PR69 1207 aa13.59□□□□□ -0.23
Trim56-201ENSMUST00000054384 Triml1Q8BVP1 470 aa13.59□□□□□ -0.23
Trim56-201ENSMUST00000054384 NmiO35309 314 aa13.58□□□□□ -0.23
Trim56-201ENSMUST00000054384 CebpzP53569 1052 aaKnown RBP13.58□□□□□ -0.23
Trim56-201ENSMUST00000054384 Ift88Q61371 824 aa13.58□□□□□ -0.23
Trim56-201ENSMUST00000054384 Cyp4f39Q8BGU0 532 aa13.58□□□□□ -0.23
Trim56-201ENSMUST00000054384 PrxO55103 1391 aa13.58□□□□□ -0.23
Trim56-201ENSMUST00000054384 NsmfQ99NF2 532 aa13.58□□□□□ -0.24
Trim56-201ENSMUST00000054384 Terf2O35144 541 aa13.58□□□□□ -0.24
Trim56-201ENSMUST00000054384 Fam186bD3Z420 943 aa13.58□□□□□ -0.24
Trim56-201ENSMUST00000054384 Zbtb21E9Q444 1094 aa13.58□□□□□ -0.24
Trim56-201ENSMUST00000054384 Ccdc38Q8CDN8 563 aa13.58□□□□□ -0.24
Trim56-201ENSMUST00000054384 Pcf11G3X9Z4 1553 aa13.58□□□□□ -0.24
Trim56-201ENSMUST00000054384 Gucy1a3Q9ERL9 691 aa13.58□□□□□ -0.24
Trim56-201ENSMUST00000054384 Serpinc1P32261 465 aa13.58□□□□□ -0.24
Trim56-201ENSMUST00000054384 RragbQ6NTA4 374 aa13.58□□□□□ -0.24
Trim56-201ENSMUST00000054384 Ccdc122Q8BVN0 290 aa13.58□□□□□ -0.24
Trim56-201ENSMUST00000054384 Mroh7A2AVR2 1279 aa13.57□□□□□ -0.24
Trim56-201ENSMUST00000054384 Il1rapl2Q9ERS6 686 aa13.57□□□□□ -0.24
Trim56-201ENSMUST00000054384 Duox2A2AQ99 1517 aa13.57□□□□□ -0.24
Trim56-201ENSMUST00000054384 Ube3aO08759 870 aa13.57□□□□□ -0.24
Trim56-201ENSMUST00000054384 Ankrd40Q5SUE8 363 aa13.57□□□□□ -0.24
Trim56-201ENSMUST00000054384 Irf9Q61179 399 aa13.57□□□□□ -0.24
Trim56-201ENSMUST00000054384 Klhl30Q8C3F7 581 aa13.57□□□□□ -0.24
Trim56-201ENSMUST00000054384 Cib2Q9Z309 187 aa13.57□□□□□ -0.24
Trim56-201ENSMUST00000054384 Cfap73J3QPZ5 306 aa13.57□□□□□ -0.24
Trim56-201ENSMUST00000054384 Usp5P56399 858 aaKnown RBP13.57□□□□□ -0.24
Trim56-201ENSMUST00000054384 Smc5Q8CG46 1101 aaKnown RBP13.57□□□□□ -0.24
Trim56-201ENSMUST00000054384 Tmod2Q9JKK7 351 aa13.57□□□□□ -0.24
Trim56-201ENSMUST00000054384 Zmym3Q9JLM4 1370 aa13.57□□□□□ -0.24
Trim56-201ENSMUST00000054384 Fam204aQ8C6C7 236 aa13.57□□□□□ -0.24
Trim56-201ENSMUST00000054384 Speer4dL7N216 212 aa13.57□□□□□ -0.24
Trim56-201ENSMUST00000054384 Syt1P46096 421 aa13.57□□□□□ -0.24
Trim56-201ENSMUST00000054384 HellsQ60848 821 aa13.57□□□□□ -0.24
Trim56-201ENSMUST00000054384 Jmjd4Q8BFT6 427 aa13.57□□□□□ -0.24
Trim56-201ENSMUST00000054384 Aimp1P31230 310 aaKnown RBP13.57□□□□□ -0.24
Trim56-201ENSMUST00000054384 Arap1Q4LDD4 1452 aa13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 Atp8b3Q6UQ17 1335 aa13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 Atp2a2O55143 1044 aaKnown RBP13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 Tubb4aQ9D6F9 444 aa13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 Mkrn1Q9QXP6 481 aa13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 Supt6hQ62383 1726 aaKnown RBP13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 Stx8O88983 236 aa13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 Cfap157Q0VFX2 523 aa13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 Ppp1r21Q3TDD9 780 aa13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 Atxn3Q9CVD2 355 aa13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 Tbc1d8bA3KGB4 1114 aa13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 Dzip1lQ499E4 774 aa13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 Ttc12Q8BW49 704 aa13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 CactinQ9CS00 772 aaKnown RBP13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 Hook2Q7TMK6 716 aa13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 Zswim4Q8C7B8 1101 aa13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 Ccdc91Q9D8L5 442 aa13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 Pus7B7ZNL8 666 aaKnown RBP13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 Stat1P42225 749 aa13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 Cplx4Q80WM3 160 aa13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 Egfl6Q9JJZ5 550 aa13.56□□□□□ -0.24
Trim56-201ENSMUST00000054384 Znf18Q810A1 556 aa13.55□□□□□ -0.24
Trim56-201ENSMUST00000054384 Akap8Q9DBR0 687 aaKnown RBP13.55□□□□□ -0.24
Trim56-201ENSMUST00000054384 Cyp7a1Q64505 503 aa13.55□□□□□ -0.24
Trim56-201ENSMUST00000054384 Six6os1Q9CTN5 574 aa13.55□□□□□ -0.24
Trim56-201ENSMUST00000054384 Ca8P28651 291 aa13.55□□□□□ -0.24
Trim56-201ENSMUST00000054384 Soga3Q6NZL0 945 aa13.55□□□□□ -0.24
Trim56-201ENSMUST00000054384 Syce1Q9D495 329 aa13.55□□□□□ -0.24
Trim56-201ENSMUST00000054384 Tnnc1P19123 161 aa13.55□□□□□ -0.24
Trim56-201ENSMUST00000054384 AdnpQ9Z103 1108 aaKnown RBP13.55□□□□□ -0.24
Trim56-201ENSMUST00000054384 KdrP35918 1367 aa13.55□□□□□ -0.24
Trim56-201ENSMUST00000054384 Slc1a4O35874 532 aa13.55□□□□□ -0.24
Trim56-201ENSMUST00000054384 Ctdp1Q7TSG2 960 aa13.55□□□□□ -0.24
Trim56-201ENSMUST00000054384 Plekhm2Q80TQ5 1018 aa13.55□□□□□ -0.24
Trim56-201ENSMUST00000054384 Dph6Q9CQ28 267 aa13.55□□□□□ -0.24
Trim56-201ENSMUST00000054384 Syt10Q9R0N4 523 aa13.55□□□□□ -0.24
Trim56-201ENSMUST00000054384 Izumo3A6PWV3 263 aa13.55□□□□□ -0.24
Trim56-201ENSMUST00000054384 Gnat3Q3V3I2 354 aa13.55□□□□□ -0.24
Trim56-201ENSMUST00000054384 Gm7347D3YYI9 267 aa13.55□□□□□ -0.24
Trim56-201ENSMUST00000054384 Ppp1r9aH3BJD6 1292 aa13.55□□□□□ -0.24
Trim56-201ENSMUST00000054384 2310002L09RikQ9D7L5 217 aa13.55□□□□□ -0.24
Trim56-201ENSMUST00000054384 Slc38a10Q5I012 1090 aa13.54□□□□□ -0.24
Retrieved 100 of 22,080 RNA–protein pairs in 145 ms