RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 NCKAP1Q9Y2A7 1128 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 PEX16Q9Y5Y5 336 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 CENPVL1A0A0U1RR11 272 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 OR6C74A6NCV1 312 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 PVRP15151 417 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 UGT2B7P16662 529 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 PSMA1P25786 263 aaKnown RBP17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 RGS8P57771 180 aaPredicted RBP17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 TNFRSF17Q02223 184 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 PRKCDQ05655 676 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 FLYWCH1Q4VC44 716 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 SLC27A4Q6P1M0 643 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 PRSS41Q7RTY9 318 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 EGFL6Q8IUX8 553 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 PROKR2Q8NFJ6 384 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 DIO2Q92813 273 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 OR2A5Q96R48 311 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 BARHL1Q9BZE3 327 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 CLEC1BQ9P126 229 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 MRPS2Q9Y399 296 aaKnown RBP17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 RGS5O15539 181 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 RAB36O95755 333 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 THY1P04216 161 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 SPNP16150 400 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 GPR4P46093 362 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 ARFIP1P53367 373 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 KIAA1024LP59773 190 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 EFNB1P98172 346 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 ZNF45Q02386 682 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 GPR18Q14330 331 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 TRAM2Q15035 370 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 ZNF181Q2M3W8 571 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 TRMT12Q53H54 448 aaKnown RBP17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 MFSD12Q6NUT3 480 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 TUBA3EQ6PEY2 450 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 FRRS1Q6ZNA5 592 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 PHC2Q8IXK0 858 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 LINC00471Q8N535 108 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 TESQ9UGI8 421 aaKnown RBP17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 LIPT1Q9Y234 373 aa17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 YARS2Q9Y2Z4 477 aaKnown RBP17.17■□□□□ 0.34
SHKBP1-201ENST00000291842 PIP5K1CO60331 668 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 MED26O95402 600 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 DLGAP3O95886 979 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 GNSP15586 552 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 GSTM3P21266 225 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 C1DQ13901 141 aaKnown RBP17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 FAM214AQ32MH5 1076 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 SPANXN2Q5MJ10 180 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 AGAP7PQ5VUJ5 663 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 FCRL6Q6DN72 434 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 SLC30A6Q6NXT4 461 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 TMEM184AQ6ZMB5 413 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 PLEKHM3Q6ZWE6 761 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 PSD4Q8NDX1 1056 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 OR4K14Q8NGD5 310 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 GNPDA2Q8TDQ7 276 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 TMEM255BQ8WV15 326 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 FGF11Q92914 225 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 MRPL38Q96DV4 380 aaKnown RBP17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 ARSGQ96EG1 525 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 RNFT2Q96EX2 444 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 MCHR1Q99705 422 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 SLC28A3Q9HAS3 691 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 C14orf119Q9NWQ9 140 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 ERVK13-1Q9NX77 482 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 DIMT1Q9UNQ2 313 aaKnown RBP17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 PCDHGB6Q9Y5F9 930 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 SAGE2PA6NJ88 616 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 SYT5O00445 386 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 ASNA1O43681 348 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 LDB3O75112 727 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 NDUFS1P28331 727 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 MAGEA8P43361 318 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 ST3GAL3Q11203 375 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 DUSP5Q16690 384 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 PRAMEF8Q5VWM4 474 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 PRAMEF7Q5VXH5 474 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 TMEM163Q8TC26 289 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 GATAD2BQ8WXI9 593 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 HPS1Q92902 700 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 CEP19Q96LK0 163 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 NDUFB11Q9NX14 153 aa17.16■□□□□ 0.34
SHKBP1-201ENST00000291842 AP3D1O14617 1153 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 OMPP47874 163 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 CBX3Q13185 183 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 SUZ12Q15022 739 aaKnown RBP17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 GPR68Q15743 365 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 PUS10Q3MIT2 529 aaKnown RBP17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 ZNF542PQ5EBM4 170 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 FIGLAQ6QHK4 219 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 TMEM92Q6UXU6 159 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 NRMQ8IXM6 262 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 NT5CQ8TCD5 201 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 SLC22A18Q96BI1 424 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 MS4A4EQ96PG1 132 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 S1PR5Q9H228 398 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 CHCHD3Q9NX63 227 aaKnown RBP17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 CALML5Q9NZT1 146 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 STUB1Q9UNE7 303 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms