RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 FOLH1BQ9HBA9 442 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 DTX4Q9Y2E6 619 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 NDUFAF1Q9Y375 327 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 TNRC6AQ8NDV7 1962 aaKnown RBP13.88□□□□□ -0.19
NUP54-213ENST00000513352 PKD1L2Q7Z442 2459 aa13.88□□□□□ -0.19
NUP54-213ENST00000513352 USP24Q9UPU5 2620 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 LOC100653049A0A140TA62 436 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 A0A1W2PP18 115 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 ASPDHA6ND91 283 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 SLC22A2O15244 555 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 KRT34O76011 436 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 UQCRC2P22695 453 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 EMDP50402 254 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 NR0B1P51843 470 aaKnown RBP13.87□□□□□ -0.19
NUP54-213ENST00000513352 SOX8P57073 446 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 RHDQ02161 417 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 CYLC2Q14093 348 aaPredicted RBP13.87□□□□□ -0.19
NUP54-213ENST00000513352 ACER2Q5QJU3 275 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 BHLHB9Q6PI77 547 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 ISLR2Q6UXK2 745 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 WDR53Q7Z5U6 358 aaPredicted RBP13.87□□□□□ -0.19
NUP54-213ENST00000513352 POU5F2Q8N7G0 328 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 PSMA8Q8TAA3 256 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 NUBPLQ8TB37 319 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 PSMF1Q92530 271 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 SLC9A6Q92581 669 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 OTUB1Q96FW1 271 aaPredicted RBP13.87□□□□□ -0.19
NUP54-213ENST00000513352 SLC35G5Q96KT7 338 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 LRRC37BQ96QE4 947 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 CCDC106Q9BWC9 280 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 EPS8L2Q9H6S3 715 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 IL1RL2Q9HB29 575 aa13.87□□□□□ -0.19
NUP54-213ENST00000513352 FAF1Q9UNN5 650 aaPredicted RBP13.87□□□□□ -0.19
NUP54-213ENST00000513352 MGAQ8IWI9 3026 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 MAN1A2O60476 641 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 ERN1O75460 977 aaKnown RBP13.86□□□□□ -0.19
NUP54-213ENST00000513352 ITGA10O75578 1167 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 CEACAM4O75871 244 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 OR2J2O76002 312 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 KCNH1O95259 989 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 F10P00742 488 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 IFI6P09912 130 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 TRPC1P48995 793 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 PRIM2P49643 509 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 CASP9P55211 416 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 NRG3P56975 720 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 MLF1P58340 268 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 CBX1P83916 185 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 KCNAB2Q13303 367 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 NFYCQ13952 458 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 LASP1Q14847 261 aaKnown RBP13.86□□□□□ -0.19
NUP54-213ENST00000513352 TLR1Q15399 786 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 GTDC1Q4AE62 458 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 PAGE3Q5JUK9 113 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 H3F3CQ6NXT2 135 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 SLC44A2Q8IWA5 706 aaPredicted RBP13.86□□□□□ -0.19
NUP54-213ENST00000513352 BEST3Q8N1M1 668 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 TMEM156Q8N614 296 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 SLC22A8Q8TCC7 542 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 PNPT1Q8TCS8 783 aaKnown RBP13.86□□□□□ -0.19
NUP54-213ENST00000513352 TSPEARQ8WU66 669 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 GTF2H4Q92759 462 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 NXF5Q9H1B4 397 aaKnown RBP13.86□□□□□ -0.19
NUP54-213ENST00000513352 MYLK2Q9H1R3 596 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 ZNF552Q9H707 407 aaPredicted RBP13.86□□□□□ -0.19
NUP54-213ENST00000513352 SERHLQ9NQF3 203 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 STMN3Q9NZ72 180 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 MYOTQ9UBF9 498 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.86□□□□□ -0.19
NUP54-213ENST00000513352 OR10H1Q9Y4A9 318 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 DSPP15924 2871 aaKnown RBP13.86□□□□□ -0.19
NUP54-213ENST00000513352 CPAMD8Q8IZJ3 1885 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 CACNA1BQ00975 2339 aa13.86□□□□□ -0.19
NUP54-213ENST00000513352 CACNA1GO43497 2377 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 A0A096LPI6 279 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 BBIP1A8MTZ0 92 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 MRASO14807 208 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 HMGN2P05204 90 aaKnown RBP13.85□□□□□ -0.19
NUP54-213ENST00000513352 KRT16P08779 473 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 COX4I1P13073 169 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 SOX11P35716 441 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 CASRP41180 1078 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 SSR4P51571 173 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 CORO7P57737 925 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 DCAF7P61962 342 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 RPS26P62854 115 aaKnown RBP13.85□□□□□ -0.19
NUP54-213ENST00000513352 OC90Q02509 493 aaPredicted RBP13.85□□□□□ -0.19
NUP54-213ENST00000513352 MFAP5Q13361 173 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 LINC00303Q3SY05 128 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 REP15Q6BDI9 236 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 MFSD12Q6NUT3 480 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 C6orf120Q7Z4R8 191 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 DHDDSQ86SQ9 333 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 TREML1Q86YW5 311 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 PRR22Q8IZ63 422 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 TAGAPQ8N103 731 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 LGI4Q8N135 537 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 CDRT4Q8N9R6 151 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 GOT1L1Q8NHS2 421 aaPredicted RBP13.85□□□□□ -0.19
NUP54-213ENST00000513352 C9orf43Q8TAL5 461 aaPredicted RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms