RNA–Protein interactions for RNA: ENST00000512431.5

DDX41-215, Transcript of DEAD-box helicase 41, human

TSL 5

Gene DDX41, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX41-215	ENST00000512431	KIAA1549	Q9HCM3	1950 aa		11.44	□□□□□ -0.58
DDX41-215	ENST00000512431	RNF223	E7ERA6	249 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	KRT14	P02533	472 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	PGAM1	P18669	254 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	HIST1H1T	P22492	207 aa	Predicted RBP	11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	GABRB3	P28472	473 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	SOX18	P35713	384 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	CASP3	P42574	277 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	KCNJ5	P48544	419 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	NR1H2	P55055	460 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	KRTAP1-1	Q07627	177 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	SLAMF1	Q13291	335 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	VEZF1	Q14119	521 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	EBP	Q15125	230 aa	Known RBP	11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	KCTD19	Q17RG1	926 aa	Predicted RBP	11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	KBTBD12	Q3ZCT8	623 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	CHRFAM7A	Q494W8	412 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	PAGE2B	Q5JRK9	111 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	FNDC7	Q5VTL7	733 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	TIGD3	Q6B0B8	471 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	TMEM64	Q6YI46	380 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	DGAT2L6	Q6ZPD8	337 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	P4HA3	Q7Z4N8	544 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	VN1R5	Q7Z5H4	357 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	GRAMD2A	Q8IUY3	354 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	ST13P4	Q8IZP2	240 aa	Predicted RBP	11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	NKAP	Q8N5F7	415 aa	Known RBP	11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	OR14L1P	Q8NHC6	308 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	RIT1	Q92963	219 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	VPS39	Q96JC1	886 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	SIGLEC10	Q96LC7	697 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	PHACTR1	Q9C0D0	580 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	EHD1	Q9H4M9	534 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	PPAN	Q9NQ55	473 aa	Known RBP	11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	YAE1D1	Q9NRH1	226 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	ZNF701	Q9NV72	531 aa	Predicted RBP	11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	ELOVL5	Q9NYP7	299 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	OARD1	Q9Y530	152 aa		11.43	□□□□□ -0.58
DDX41-215	ENST00000512431	ZAN	Q9Y493	2812 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	ARID1A	O14497	2285 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431		A0A1W2PNV4	684 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	C16orf97	H3BN30	126 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	PHF1	O43189	567 aa	Predicted RBP	11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	TTC4	O95801	387 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	TBX6	O95947	436 aa	Predicted RBP	11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	CRH	P06850	196 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	POU2F1	P14859	743 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	PTPN6	P29350	595 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	UGT2B10	P36537	528 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	SSR2	P43308	183 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	PGGT1B	P53609	377 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	SLC37A1	P57057	533 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	LAPTM5	Q13571	262 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	CRYM	Q14894	314 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	CLEC12B	Q2HXU8	276 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	SPRED3	Q2MJR0	410 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	TMEM35A	Q53FP2	167 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	C10orf62	Q5T681	223 aa	Predicted RBP	11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	OR2A2	Q6IF42	318 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	ANGPTL8	Q6UXH0	198 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	ZNF793	Q6ZN11	406 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	CHMP1B	Q7LBR1	199 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	BTLA	Q7Z6A9	289 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	CNEP1R1	Q8N9A8	125 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	MAPK1IP1L	Q8NDC0	245 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	DOK4	Q8TEW6	326 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	PTCD3	Q96EY7	689 aa	Known RBP	11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	ZC3HAV1L	Q96H79	300 aa	Known RBP	11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	HS3ST6	Q96QI5	342 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	BAG1	Q99933	345 aa	Predicted RBP	11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	EFCAB11	Q9BUY7	163 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	METTL7A	Q9H8H3	244 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	CNOT10	Q9H9A5	744 aa	Known RBP	11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	ADGRE2	Q9UHX3	823 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	PTBP2	Q9UKA9	531 aa	Known RBP	11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	IKZF3	Q9UKT9	509 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	ZNF490	Q9ULM2	529 aa	Predicted RBP	11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	MAPRE3	Q9UPY8	281 aa		11.42	□□□□□ -0.58
DDX41-215	ENST00000512431	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	NPEPPSL1	A6NEC2	478 aa		11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	RTCA	O00442	366 aa	Known RBP	11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	CBR3	O75828	277 aa		11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	TNFSF13	O75888	250 aa		11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	BUD31	P41223	144 aa	Predicted RBP	11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	MAGEA3	P43357	314 aa		11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	SLC6A12	P48065	614 aa		11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	RPS13	P62277	151 aa	Known RBP	11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	ETFDH	Q16134	617 aa		11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	C18orf21	Q32NC0	220 aa	Predicted RBP	11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	SPANXN3	Q5MJ09	141 aa		11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	ADNP2	Q6IQ32	1131 aa		11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	AAGAB	Q6PD74	315 aa		11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	PLXDC2	Q6UX71	529 aa		11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	UBE3D	Q7Z6J8	389 aa		11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	GALNT7	Q86SF2	657 aa		11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	ADGRE4P	Q86SQ3	457 aa		11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	ADAMTSL2	Q86TH1	951 aa		11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	GPR180	Q86V85	440 aa		11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	CNTN4	Q8IWV2	1026 aa		11.41	□□□□□ -0.58
DDX41-215	ENST00000512431	TRIM42	Q8IWZ5	723 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 62 ms