RNA–Protein interactions for RNA: YFR001W

LOC1, Nuclear protein involved in asymmetric localization of ASH1 mRNA, yeast

Gene LOC1, Length 615 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LOC1	YFR001W	TSL1	P38427	1098 aa	Known RBP	4.69	□□□□□ -1.66
LOC1	YFR001W	MEF2	P39677	819 aa		4.69	□□□□□ -1.66
LOC1	YFR001W	TAF1	P46677	1066 aa		4.69	□□□□□ -1.66
LOC1	YFR001W	SFB2	P53953	876 aa		4.69	□□□□□ -1.66
LOC1	YFR001W	BUL2	Q03758	920 aa	Known RBP	4.69	□□□□□ -1.66
LOC1	YFR001W	SCT1	P32784	759 aa		4.68	□□□□□ -1.66
LOC1	YFR001W	HUL4	P40985	892 aa		4.68	□□□□□ -1.66
LOC1	YFR001W	TAF8	Q03750	510 aa		4.68	□□□□□ -1.66
LOC1	YFR001W	YDR132C	Q03900	495 aa		4.68	□□□□□ -1.66
LOC1	YFR001W	LCD1	Q04377	747 aa		4.68	□□□□□ -1.66
LOC1	YFR001W	DUS4	Q06063	367 aa		4.68	□□□□□ -1.66
LOC1	YFR001W	YPL277C	Q08989	487 aa		4.68	□□□□□ -1.66
LOC1	YFR001W	YPR071W	Q12346	211 aa		4.68	□□□□□ -1.66
LOC1	YFR001W	YOR131C	Q12486	218 aa		4.68	□□□□□ -1.66
LOC1	YFR001W	SOD2	P00447	233 aa		4.67	□□□□□ -1.66
LOC1	YFR001W	RPS13	P05756	151 aa	Known RBP	4.67	□□□□□ -1.66
LOC1	YFR001W	RPC82	P32349	654 aa		4.67	□□□□□ -1.66
LOC1	YFR001W	YKL091C	P33324	310 aa	Known RBP	4.67	□□□□□ -1.66
LOC1	YFR001W	ERT1	P38140	529 aa		4.67	□□□□□ -1.66
LOC1	YFR001W	YBR238C	P38330	731 aa	Known RBP	4.67	□□□□□ -1.66
LOC1	YFR001W	ZRG8	P40021	1076 aa		4.67	□□□□□ -1.66
LOC1	YFR001W	YER158C	P40095	573 aa		4.67	□□□□□ -1.66
LOC1	YFR001W	TOK1	P40310	691 aa		4.67	□□□□□ -1.66
LOC1	YFR001W	YKE2	P52553	114 aa		4.67	□□□□□ -1.66
LOC1	YFR001W	RIM8	P53179	542 aa		4.67	□□□□□ -1.66
LOC1	YFR001W	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	4.67	□□□□□ -1.66	not detected
LOC1	YFR001W	GCN5	Q03330	439 aa		4.67	□□□□□ -1.66
LOC1	YFR001W	RPN4	Q03465	531 aa		4.67	□□□□□ -1.66
LOC1	YFR001W	CAN1	P04817	590 aa		4.66	□□□□□ -1.66
LOC1	YFR001W	TOP3	P13099	656 aa		4.66	□□□□□ -1.66
LOC1	YFR001W	CDC48	P25694	835 aa	Known RBP	4.66	□□□□□ -1.66
LOC1	YFR001W	YKL222C	P35995	705 aa		4.66	□□□□□ -1.66
LOC1	YFR001W	PET10	P36139	283 aa		4.66	□□□□□ -1.66
LOC1	YFR001W	FLR1	P38124	548 aa		4.66	□□□□□ -1.66
LOC1	YFR001W	GGA2	P38817	585 aa	Known RBP	4.66	□□□□□ -1.66
LOC1	YFR001W	MND2	P40577	368 aa		4.66	□□□□□ -1.66
LOC1	YFR001W	CCM1	P48237	864 aa	Predicted RBP	4.66	□□□□□ -1.66
LOC1	YFR001W	RTA1	P53047	317 aa		4.66	□□□□□ -1.66
LOC1	YFR001W	PBP1	P53297	722 aa	Known RBP	4.66	□□□□□ -1.66
LOC1	YFR001W	YPR196W	Q06595	470 aa		4.66	□□□□□ -1.66
LOC1	YFR001W	YDL124W	Q07551	312 aa	Known RBP	4.66	□□□□□ -1.66
LOC1	YFR001W	PPM2	Q08282	695 aa		4.66	□□□□□ -1.66
LOC1	YFR001W	YTA7	P40340	1379 aa		4.65	□□□□□ -1.66
LOC1	YFR001W	CDC6	P09119	513 aa		4.65	□□□□□ -1.67
LOC1	YFR001W	ENA1	P13587	1091 aa		4.65	□□□□□ -1.67
LOC1	YFR001W	MSD1	P15179	658 aa	Known RBP	4.65	□□□□□ -1.67
LOC1	YFR001W	GAL11	P19659	1081 aa		4.65	□□□□□ -1.67
LOC1	YFR001W	SRP101	P32916	621 aa		4.65	□□□□□ -1.67
LOC1	YFR001W	DOM34	P33309	386 aa		4.65	□□□□□ -1.67
LOC1	YFR001W	REC104	P33323	182 aa		4.65	□□□□□ -1.67
LOC1	YFR001W	BET3	P36149	193 aa		4.65	□□□□□ -1.67
LOC1	YFR001W	GIP4	P39732	760 aa		4.65	□□□□□ -1.67
LOC1	YFR001W	YGR012W	P53206	393 aa		4.65	□□□□□ -1.67
LOC1	YFR001W	GTF1	P53260	183 aa	Predicted RBP	4.65	□□□□□ -1.67
LOC1	YFR001W	ENA2	Q01896	1091 aa		4.65	□□□□□ -1.67
LOC1	YFR001W	CDA1	Q06702	301 aa		4.65	□□□□□ -1.67
LOC1	YFR001W	TPO1	Q07824	586 aa		4.65	□□□□□ -1.67
LOC1	YFR001W	GPB1	Q08886	897 aa		4.65	□□□□□ -1.67
LOC1	YFR001W	ENA5	Q12691	1091 aa		4.65	□□□□□ -1.67
LOC1	YFR001W	HSF1	P10961	833 aa		4.64	□□□□□ -1.67
LOC1	YFR001W	TOD6	P34219	525 aa		4.64	□□□□□ -1.67
LOC1	YFR001W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.64	□□□□□ -1.67	not detected
LOC1	YFR001W	CHZ1	P40019	153 aa	Predicted RBP	4.64	□□□□□ -1.67
LOC1	YFR001W	BUD6	P41697	788 aa		4.64	□□□□□ -1.67
LOC1	YFR001W	GCV2	P49095	1034 aa		4.64	□□□□□ -1.67
LOC1	YFR001W	SPT20	P50875	604 aa		4.64	□□□□□ -1.67
LOC1	YFR001W	POA1	P38218	177 aa		4.63	□□□□□ -1.67
LOC1	YFR001W	UBP6	P43593	499 aa	Known RBP	4.63	□□□□□ -1.67
LOC1	YFR001W	VPS62	P53285	467 aa		4.63	□□□□□ -1.67
LOC1	YFR001W	RXT3	Q07458	294 aa		4.63	□□□□□ -1.67
LOC1	YFR001W	ACK1	Q07622	623 aa	Predicted RBP	4.63	□□□□□ -1.67
LOC1	YFR001W	ADY3	Q07732	790 aa		4.63	□□□□□ -1.67
LOC1	YFR001W	NOT3	P06102	836 aa	Known RBP	4.62	□□□□□ -1.67
LOC1	YFR001W	EMC1	P25574	760 aa		4.62	□□□□□ -1.67
LOC1	YFR001W	CDC20	P26309	610 aa		4.62	□□□□□ -1.67
LOC1	YFR001W	HMI1	Q12039	706 aa		4.62	□□□□□ -1.67
LOC1	YFR001W	TOM70	P07213	617 aa	Known RBP	4.61	□□□□□ -1.67
LOC1	YFR001W	SPE1	P08432	466 aa		4.61	□□□□□ -1.67
LOC1	YFR001W	CIT2	P08679	460 aa		4.61	□□□□□ -1.67
LOC1	YFR001W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
LOC1	YFR001W	MET12	P46151	657 aa		4.61	□□□□□ -1.67
LOC1	YFR001W	PSP2	P50109	593 aa	Known RBP	4.61	□□□□□ -1.67
LOC1	YFR001W	RAI1	P53063	387 aa	Known RBP	4.61	□□□□□ -1.67
LOC1	YFR001W	GIS1	Q03833	894 aa		4.61	□□□□□ -1.67
LOC1	YFR001W	ENV7	Q12003	364 aa		4.61	□□□□□ -1.67
LOC1	YFR001W	ERR1	P0CX10	437 aa		4.6	□□□□□ -1.67
LOC1	YFR001W	ERR2	P0CX11	437 aa		4.6	□□□□□ -1.67
LOC1	YFR001W	TIM23	P32897	222 aa		4.6	□□□□□ -1.67
LOC1	YFR001W	NUP82	P40368	713 aa		4.6	□□□□□ -1.67
LOC1	YFR001W	CHA4	P43634	648 aa		4.6	□□□□□ -1.67
LOC1	YFR001W	FPR4	Q06205	392 aa	Predicted RBP	4.6	□□□□□ -1.67
LOC1	YFR001W	YLR358C	O13565	187 aa		4.59	□□□□□ -1.67
LOC1	YFR001W	HIS5	P07172	385 aa		4.59	□□□□□ -1.67
LOC1	YFR001W	RFA1	P22336	621 aa	Known RBP	4.59	□□□□□ -1.67
LOC1	YFR001W	STE13	P33894	931 aa		4.59	□□□□□ -1.67
LOC1	YFR001W	ORC1	P54784	914 aa	Predicted RBP	4.59	□□□□□ -1.67
LOC1	YFR001W	YAP6	Q03935	383 aa		4.59	□□□□□ -1.67
LOC1	YFR001W	YLR224W	Q05947	369 aa		4.59	□□□□□ -1.67
LOC1	YFR001W	NOP12	Q08208	459 aa	Known RBP	4.59	□□□□□ -1.67
LOC1	YFR001W	RPP2A	P05319	106 aa	Known RBP	4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 118.3 ms