RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-231ENST00000640499 DDX21Q9NR30 783 aaKnown RBP eCLIP34.63■■■■□ 3.13
VEGFA-231ENST00000640499 CHPF2Q9P2E5 772 aa34.63■■■■□ 3.13
VEGFA-231ENST00000640499 FANCIQ9NVI1 1328 aa34.62■■■■□ 3.13
VEGFA-231ENST00000640499 KIAA1551Q9HCM1 1747 aa34.62■■■■□ 3.13
VEGFA-231ENST00000640499 CLEC4GQ6UXB4 293 aa34.62■■■■□ 3.13
VEGFA-231ENST00000640499 SERPINB2P05120 415 aa34.61■■■■□ 3.13
VEGFA-231ENST00000640499 MAP3K15Q6ZN16 1313 aa34.6■■■■□ 3.13
VEGFA-231ENST00000640499 RGL2O15211 777 aa34.6■■■■□ 3.13
VEGFA-231ENST00000640499 ERVV-1B6SEH8 477 aa34.59■■■■□ 3.13
VEGFA-231ENST00000640499 NUP98P52948 1817 aa34.58■■■■□ 3.13
VEGFA-231ENST00000640499 COPS6Q7L5N1 327 aa34.57■■■■□ 3.12
VEGFA-231ENST00000640499 XAGE3Q8WTP9 111 aa34.57■■■■□ 3.12
VEGFA-231ENST00000640499 ZBTB3Q9H5J0 574 aa34.57■■■■□ 3.12
VEGFA-231ENST00000640499 DBF4Q9UBU7 674 aaPredicted RBP34.56■■■■□ 3.12
VEGFA-231ENST00000640499 PXDNLA1KZ92 1463 aa34.56■■■■□ 3.12
VEGFA-231ENST00000640499 SETDB2Q96T68 719 aa34.55■■■■□ 3.12
VEGFA-231ENST00000640499 CARMIL3Q8ND23 1372 aa34.54■■■■□ 3.12
VEGFA-231ENST00000640499 KIF6Q6ZMV9 814 aa34.54■■■■□ 3.12
VEGFA-231ENST00000640499 ZNF652Q9Y2D9 606 aa34.54■■■■□ 3.12
VEGFA-231ENST00000640499 N4BP2Q86UW6 1770 aaPredicted RBP34.54■■■■□ 3.12
VEGFA-231ENST00000640499 TGFB2P61812 414 aa34.52■■■■□ 3.12
VEGFA-231ENST00000640499 EXOSC9Q06265 439 aaKnown RBP34.52■■■■□ 3.12
VEGFA-231ENST00000640499 AIMP1Q12904 312 aaKnown RBP34.52■■■■□ 3.12
VEGFA-231ENST00000640499 TWISTNBQ3B726 338 aaPredicted RBP34.52■■■■□ 3.12
VEGFA-231ENST00000640499 A0A0G2JLW4 131 aa34.51■■■■□ 3.12
VEGFA-231ENST00000640499 KCNA3P22001 575 aa34.51■■■■□ 3.12
VEGFA-231ENST00000640499 PRR5LQ6MZQ0 368 aa34.51■■■■□ 3.12
VEGFA-231ENST00000640499 NIP7Q9Y221 180 aaKnown RBP eCLIP34.51■■■■□ 3.12
VEGFA-231ENST00000640499 GOLGB1Q14789 3259 aaKnown RBP34.51■■■■□ 3.11
VEGFA-231ENST00000640499 DPEP1P16444 411 aa34.5■■■■□ 3.11
VEGFA-231ENST00000640499 GOLGA2Q08379 1002 aa34.5■■■■□ 3.11
VEGFA-231ENST00000640499 GIGYF2Q6Y7W6 1299 aaKnown RBP34.5■■■■□ 3.11
VEGFA-231ENST00000640499 CCDC24Q8N4L8 307 aa34.5■■■■□ 3.11
VEGFA-231ENST00000640499 ATP10DQ9P241 1426 aa34.49■■■■□ 3.11
VEGFA-231ENST00000640499 VAMP4O75379 141 aa34.49■■■■□ 3.11
VEGFA-231ENST00000640499 YBX3P16989 372 aaKnown RBP eCLIP34.49■■■■□ 3.11
VEGFA-231ENST00000640499 HYPKQ9NX55 129 aa34.49■■■■□ 3.11
VEGFA-231ENST00000640499 ANKRD31Q8N7Z5 1873 aa34.48■■■■□ 3.11
VEGFA-231ENST00000640499 ZNF34Q8IZ26 560 aa34.48■■■■□ 3.11
VEGFA-231ENST00000640499 PHAXQ9H814 394 aaKnown RBP34.48■■■■□ 3.11
VEGFA-231ENST00000640499 TCERG1O14776 1098 aaKnown RBP34.47■■■■□ 3.11
VEGFA-231ENST00000640499 CCDC30Q5VVM6 783 aa34.47■■■■□ 3.11
VEGFA-231ENST00000640499 MYH16Q9H6N6 1097 aa34.47■■■■□ 3.11
VEGFA-231ENST00000640499 WWC3Q9ULE0 1092 aa34.47■■■■□ 3.11
VEGFA-231ENST00000640499 UBN2Q6ZU65 1347 aa34.47■■■■□ 3.11
VEGFA-231ENST00000640499 CDCA7LQ96GN5 454 aa34.46■■■■□ 3.11
VEGFA-231ENST00000640499 CHRNA5P30532 468 aa34.45■■■■□ 3.11
VEGFA-231ENST00000640499 UTRNP46939 3433 aa34.45■■■■□ 3.11
VEGFA-231ENST00000640499 GPTP24298 496 aa34.44■■■■□ 3.1
VEGFA-231ENST00000640499 SLFN5Q08AF3 891 aa34.44■■■■□ 3.1
VEGFA-231ENST00000640499 BRCA1P38398 1863 aaKnown RBP34.44■■■■□ 3.1
VEGFA-231ENST00000640499 GPR162Q16538 588 aa34.42■■■■□ 3.1
VEGFA-231ENST00000640499 ANKRD13DQ6ZTN6 518 aa34.42■■■■□ 3.1
VEGFA-231ENST00000640499 NBPF5PQ86XG9 351 aaPredicted RBP34.42■■■■□ 3.1
VEGFA-231ENST00000640499 CNBD1Q8NA66 436 aa34.42■■■■□ 3.1
VEGFA-231ENST00000640499 PLBD2Q8NHP8 589 aa34.42■■■■□ 3.1
VEGFA-231ENST00000640499 FAM177BA6PVY3 158 aa34.41■■■■□ 3.1
VEGFA-231ENST00000640499 SUSD4Q5VX71 490 aa34.41■■■■□ 3.1
VEGFA-231ENST00000640499 PELP1Q8IZL8 1130 aaKnown RBP34.41■■■■□ 3.1
VEGFA-231ENST00000640499 BRIP1Q9BX63 1249 aa34.41■■■■□ 3.1
VEGFA-231ENST00000640499 TRMT2AQ8IZ69 625 aaKnown RBP34.4■■■■□ 3.1
VEGFA-231ENST00000640499 E9PSI1 815 aa34.39■■■■□ 3.1
VEGFA-231ENST00000640499 TCIRG1Q13488 830 aa34.39■■■■□ 3.1
VEGFA-231ENST00000640499 G2E3Q7L622 706 aa34.39■■■■□ 3.1
VEGFA-231ENST00000640499 TPTE2Q6XPS3 522 aa34.38■■■■□ 3.09
VEGFA-231ENST00000640499 CHMP4AQ9BY43 222 aa34.38■■■■□ 3.09
VEGFA-231ENST00000640499 ANKRD36CQ5JPF3 1778 aa34.38■■■■□ 3.09
VEGFA-231ENST00000640499 DCAF8L1A6NGE4 600 aa34.36■■■■□ 3.09
VEGFA-231ENST00000640499 SLC4A2P04920 1241 aa34.36■■■■□ 3.09
VEGFA-231ENST00000640499 ARFGEF2Q9Y6D5 1785 aa34.36■■■■□ 3.09
VEGFA-231ENST00000640499 NTSR2O95665 410 aa34.35■■■■□ 3.09
VEGFA-231ENST00000640499 NUTM1Q86Y26 1132 aa34.35■■■■□ 3.09
VEGFA-231ENST00000640499 C2CD5Q86YS7 1000 aa34.35■■■■□ 3.09
VEGFA-231ENST00000640499 DLEC1Q9Y238 1755 aa34.35■■■■□ 3.09
VEGFA-231ENST00000640499 COL11A2P13942 1736 aaPredicted RBP34.35■■■■□ 3.09
VEGFA-231ENST00000640499 ST5P78524 1137 aa34.34■■■■□ 3.09
VEGFA-231ENST00000640499 NLRP10Q86W26 655 aa34.34■■■■□ 3.09
VEGFA-231ENST00000640499 ABCC12Q96J65 1359 aa34.34■■■■□ 3.09
VEGFA-231ENST00000640499 ERFEQ4G0M1 354 aa34.33■■■■□ 3.09
VEGFA-231ENST00000640499 HSP90AB3PQ58FF7 597 aa34.33■■■■□ 3.09
VEGFA-231ENST00000640499 ISCA1Q9BUE6 129 aa34.33■■■■□ 3.09
VEGFA-231ENST00000640499 STK31Q9BXU1 1019 aa34.33■■■■□ 3.09
VEGFA-231ENST00000640499 PIM2Q9P1W9 311 aa34.33■■■■□ 3.09
VEGFA-231ENST00000640499 IBTKQ9P2D0 1353 aaPredicted RBP34.33■■■■□ 3.09
VEGFA-231ENST00000640499 PARP10Q53GL7 1025 aa34.32■■■■□ 3.08
VEGFA-231ENST00000640499 KLRG2A4D1S0 409 aaPredicted RBP34.31■■■■□ 3.08
VEGFA-231ENST00000640499 PDE6BP35913 854 aa34.31■■■■□ 3.08
VEGFA-231ENST00000640499 NYXQ9GZU5 481 aa34.31■■■■□ 3.08
VEGFA-231ENST00000640499 NPHP1O15259 732 aa34.3■■■■□ 3.08
VEGFA-231ENST00000640499 RIC3Q7Z5B4 369 aa34.3■■■■□ 3.08
VEGFA-231ENST00000640499 BCS1LQ9Y276 419 aa34.3■■■■□ 3.08
VEGFA-231ENST00000640499 TNRC6CQ9HCJ0 1690 aaKnown RBP34.3■■■■□ 3.08
VEGFA-231ENST00000640499 ADCY9O60503 1353 aa34.29■■■■□ 3.08
VEGFA-231ENST00000640499 ATP5J2-PTCD1G3V325 749 aa34.29■■■■□ 3.08
VEGFA-231ENST00000640499 H0YIN7 160 aa34.29■■■■□ 3.08
VEGFA-231ENST00000640499 ZNF428Q96B54 188 aa34.29■■■■□ 3.08
VEGFA-231ENST00000640499 CACNA1FO60840 1977 aa34.29■■■■□ 3.08
VEGFA-231ENST00000640499 SRGNP10124 158 aa34.28■■■■□ 3.08
VEGFA-231ENST00000640499 SYNE4Q8N205 404 aa34.28■■■■□ 3.08
VEGFA-231ENST00000640499 GRIN3BO60391 1043 aa34.27■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms