RNA–Protein interactions for RNA: ENST00000637789.1

CHD2-229, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-229	ENST00000637789	SOS1	Q07889	1333 aa	Predicted RBP	13.9	□□□□□ -0.18
CHD2-229	ENST00000637789	ERVV-2	B6SEH9	535 aa		13.9	□□□□□ -0.18
CHD2-229	ENST00000637789	LMOD1	P29536	600 aa	Predicted RBP	13.9	□□□□□ -0.18
CHD2-229	ENST00000637789	EPS15	P42566	896 aa		13.9	□□□□□ -0.18
CHD2-229	ENST00000637789	ARFGEF2	Q9Y6D5	1785 aa		13.9	□□□□□ -0.18
CHD2-229	ENST00000637789	COL6A3	P12111	3177 aa		13.9	□□□□□ -0.18
CHD2-229	ENST00000637789	MNX1	P50219	401 aa	Predicted RBP	13.89	□□□□□ -0.19
CHD2-229	ENST00000637789	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
CHD2-229	ENST00000637789	PKN2	Q16513	984 aa	Known RBP	13.89	□□□□□ -0.19
CHD2-229	ENST00000637789	CCDC93	Q567U6	631 aa		13.89	□□□□□ -0.19
CHD2-229	ENST00000637789	USP50	Q70EL3	339 aa	Predicted RBP	13.89	□□□□□ -0.19
CHD2-229	ENST00000637789	GJA3	Q9Y6H8	435 aa		13.89	□□□□□ -0.19
CHD2-229	ENST00000637789	FLT4	P35916	1363 aa		13.88	□□□□□ -0.19
CHD2-229	ENST00000637789	SCNN1D	P51172	638 aa		13.88	□□□□□ -0.19
CHD2-229	ENST00000637789	STYK1	Q6J9G0	422 aa		13.88	□□□□□ -0.19
CHD2-229	ENST00000637789	SYNE4	Q8N205	404 aa		13.88	□□□□□ -0.19
CHD2-229	ENST00000637789	C7orf43	Q8WVR3	580 aa		13.88	□□□□□ -0.19
CHD2-229	ENST00000637789	ZNF408	Q9H9D4	720 aa		13.88	□□□□□ -0.19
CHD2-229	ENST00000637789	COL15A1	P39059	1388 aa		13.87	□□□□□ -0.19
CHD2-229	ENST00000637789	TONSL	Q96HA7	1378 aa		13.87	□□□□□ -0.19
CHD2-229	ENST00000637789	FAM155A	B1AL88	458 aa	Predicted RBP	13.87	□□□□□ -0.19
CHD2-229	ENST00000637789	KIF23	Q02241	960 aa	Predicted RBP	13.87	□□□□□ -0.19
CHD2-229	ENST00000637789	PRR5L	Q6MZQ0	368 aa		13.87	□□□□□ -0.19
CHD2-229	ENST00000637789	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.87	□□□□□ -0.19
CHD2-229	ENST00000637789	BCOR	Q6W2J9	1755 aa		13.86	□□□□□ -0.19
CHD2-229	ENST00000637789	SRGN	P10124	158 aa		13.85	□□□□□ -0.19
CHD2-229	ENST00000637789	IARS	P41252	1262 aa	Known RBP	13.85	□□□□□ -0.19
CHD2-229	ENST00000637789	HUNK	P57058	714 aa		13.85	□□□□□ -0.19
CHD2-229	ENST00000637789	CABP4	P57796	275 aa		13.85	□□□□□ -0.19
CHD2-229	ENST00000637789	RAB3GAP2	Q9H2M9	1393 aa		13.84	□□□□□ -0.19
CHD2-229	ENST00000637789	OLFM4	Q6UX06	510 aa		13.84	□□□□□ -0.19
CHD2-229	ENST00000637789	MASTL	Q96GX5	879 aa		13.84	□□□□□ -0.19
CHD2-229	ENST00000637789	HDAC9	Q9UKV0	1011 aa		13.84	□□□□□ -0.19
CHD2-229	ENST00000637789	TRIOBP	Q9H2D6	2365 aa		13.84	□□□□□ -0.19
CHD2-229	ENST00000637789	AKAP11	Q9UKA4	1901 aa		13.84	□□□□□ -0.19
CHD2-229	ENST00000637789	POTEF	A5A3E0	1075 aa		13.83	□□□□□ -0.2
CHD2-229	ENST00000637789	DNAJC10	Q8IXB1	793 aa		13.83	□□□□□ -0.2
CHD2-229	ENST00000637789	KIF24	Q5T7B8	1368 aa		13.83	□□□□□ -0.2
CHD2-229	ENST00000637789	EIF6	P56537	245 aa	Known RBP	13.82	□□□□□ -0.2
CHD2-229	ENST00000637789	TBC1D9B	Q66K14	1250 aa		13.82	□□□□□ -0.2
CHD2-229	ENST00000637789	RGMB	Q6NW40	437 aa		13.82	□□□□□ -0.2
CHD2-229	ENST00000637789	FBXO46	Q6PJ61	603 aa	Predicted RBP	13.82	□□□□□ -0.2
CHD2-229	ENST00000637789	JDP2	Q8WYK2	163 aa		13.82	□□□□□ -0.2
CHD2-229	ENST00000637789	GGNBP2	Q9H3C7	697 aa		13.82	□□□□□ -0.2
CHD2-229	ENST00000637789	COL4A5	P29400	1685 aa		13.82	□□□□□ -0.2
CHD2-229	ENST00000637789	CSRNP1	Q96S65	589 aa		13.81	□□□□□ -0.2
CHD2-229	ENST00000637789	EYA1	Q99502	592 aa		13.81	□□□□□ -0.2
CHD2-229	ENST00000637789	ZBTB1	Q9Y2K1	713 aa		13.81	□□□□□ -0.2
CHD2-229	ENST00000637789	HSP90AB1	P08238	724 aa	Known RBP	13.8	□□□□□ -0.2
CHD2-229	ENST00000637789	CYP19A1	P11511	503 aa	Predicted RBP	13.8	□□□□□ -0.2
CHD2-229	ENST00000637789	RTKN2	Q8IZC4	609 aa		13.8	□□□□□ -0.2
CHD2-229	ENST00000637789	ZNF296	Q8WUU4	475 aa	Predicted RBP	13.8	□□□□□ -0.2
CHD2-229	ENST00000637789	OTUD5	Q96G74	571 aa		13.8	□□□□□ -0.2
CHD2-229	ENST00000637789	ADARB2	Q9NS39	739 aa	Known RBP	13.8	□□□□□ -0.2
CHD2-229	ENST00000637789	FYB1	O15117	783 aa		13.79	□□□□□ -0.2
CHD2-229	ENST00000637789	CCDC102A	Q96A19	550 aa		13.79	□□□□□ -0.2
CHD2-229	ENST00000637789	ROCK2	O75116	1388 aa	Known RBP	13.79	□□□□□ -0.2
CHD2-229	ENST00000637789	CNBD1	Q8NA66	436 aa		13.78	□□□□□ -0.2
CHD2-229	ENST00000637789	NFATC2IP	Q8NCF5	419 aa		13.78	□□□□□ -0.2
CHD2-229	ENST00000637789	PGAP2	Q9UHJ9	254 aa		13.78	□□□□□ -0.2
CHD2-229	ENST00000637789	EMILIN1	Q9Y6C2	1016 aa		13.78	□□□□□ -0.2
CHD2-229	ENST00000637789	ZNF157	P51786	506 aa	Predicted RBP	13.77	□□□□□ -0.21
CHD2-229	ENST00000637789	PAPPA2	Q9BXP8	1791 aa		13.77	□□□□□ -0.21
CHD2-229	ENST00000637789	COL25A1	Q9BXS0	654 aa	Predicted RBP	13.77	□□□□□ -0.21
CHD2-229	ENST00000637789	GPRC5D	Q9NZD1	345 aa		13.77	□□□□□ -0.21
CHD2-229	ENST00000637789	NPHP1	O15259	732 aa		13.76	□□□□□ -0.21
CHD2-229	ENST00000637789	ST5	P78524	1137 aa		13.76	□□□□□ -0.21
CHD2-229	ENST00000637789	DLK2	Q6UY11	383 aa		13.76	□□□□□ -0.21
CHD2-229	ENST00000637789	CDC37L1	Q7L3B6	337 aa		13.76	□□□□□ -0.21
CHD2-229	ENST00000637789	ANKRD26	Q9UPS8	1709 aa		13.76	□□□□□ -0.21
CHD2-229	ENST00000637789	BRCA2	P51587	3418 aa		13.76	□□□□□ -0.21
CHD2-229	ENST00000637789		H0YGN5	161 aa		13.75	□□□□□ -0.21
CHD2-229	ENST00000637789	CHRDL2	Q6WN34	429 aa		13.75	□□□□□ -0.21
CHD2-229	ENST00000637789	RBBP6	Q7Z6E9	1792 aa	Known RBP	13.75	□□□□□ -0.21
CHD2-229	ENST00000637789	SNED1	Q8TER0	1413 aa		13.74	□□□□□ -0.21
CHD2-229	ENST00000637789	TBC1D8	O95759	1140 aa		13.74	□□□□□ -0.21
CHD2-229	ENST00000637789	SLC10A3	P09131	477 aa		13.74	□□□□□ -0.21
CHD2-229	ENST00000637789	NPR1	P16066	1061 aa		13.74	□□□□□ -0.21
CHD2-229	ENST00000637789	CANX	P27824	592 aa	Known RBP	13.74	□□□□□ -0.21
CHD2-229	ENST00000637789	PSMD1	Q99460	953 aa		13.74	□□□□□ -0.21
CHD2-229	ENST00000637789	SCN7A	Q01118	1682 aa		13.74	□□□□□ -0.21
CHD2-229	ENST00000637789	RANBP2	P49792	3224 aa	Known RBP	13.73	□□□□□ -0.21
CHD2-229	ENST00000637789	ST20-MTHFS	A0A0A6YYL1	179 aa		13.73	□□□□□ -0.21
CHD2-229	ENST00000637789	PPM1G	O15355	546 aa	Predicted RBP	13.73	□□□□□ -0.21
CHD2-229	ENST00000637789	EN2	P19622	333 aa	Predicted RBP	13.73	□□□□□ -0.21
CHD2-229	ENST00000637789	MTHFS	P49914	203 aa		13.73	□□□□□ -0.21
CHD2-229	ENST00000637789	HIRA	P54198	1017 aa	Predicted RBP	13.73	□□□□□ -0.21
CHD2-229	ENST00000637789	USP48	Q86UV5	1035 aa		13.73	□□□□□ -0.21
CHD2-229	ENST00000637789	ZC3H15	Q8WU90	426 aa	Known RBP	13.73	□□□□□ -0.21
CHD2-229	ENST00000637789	GBA2	Q9HCG7	927 aa	Predicted RBP	13.73	□□□□□ -0.21
CHD2-229	ENST00000637789	RBM27	Q9P2N5	1060 aa	Known RBP	13.73	□□□□□ -0.21
CHD2-229	ENST00000637789	HTT	P42858	3142 aa		13.73	□□□□□ -0.21
CHD2-229	ENST00000637789	UNC80	Q8N2C7	3258 aa		13.72	□□□□□ -0.21
CHD2-229	ENST00000637789	INTS3	Q68E01	1043 aa	Known RBP	13.72	□□□□□ -0.21
CHD2-229	ENST00000637789	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.72	□□□□□ -0.21
CHD2-229	ENST00000637789	PUS7	Q96PZ0	661 aa	Known RBP	13.72	□□□□□ -0.21
CHD2-229	ENST00000637789	EIF5	P55010	431 aa	Known RBP	13.71	□□□□□ -0.21
CHD2-229	ENST00000637789	LARGE2	Q8N3Y3	721 aa		13.71	□□□□□ -0.21
CHD2-229	ENST00000637789	C2orf69	Q8N8R5	385 aa		13.71	□□□□□ -0.21
CHD2-229	ENST00000637789	SETDB2	Q96T68	719 aa		13.71	□□□□□ -0.21

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