RNA–Protein interactions for RNA: ENST00000625716.2

TCF4-249, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 359 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-249ENST00000625716 HOXC9P31274 260 aa8.77□□□□□ -1.01
TCF4-249ENST00000625716 RRS1Q15050 365 aaKnown RBP8.77□□□□□ -1.01
TCF4-249ENST00000625716 Q6ZNB5 142 aa8.77□□□□□ -1.01
TCF4-249ENST00000625716 PRR14Q9BWN1 585 aa8.77□□□□□ -1.01
TCF4-249ENST00000625716 USP54Q70EL1 1684 aa8.77□□□□□ -1.01
TCF4-249ENST00000625716 GNPATO15228 680 aa8.76□□□□□ -1.01
TCF4-249ENST00000625716 PPM1GO15355 546 aaPredicted RBP8.76□□□□□ -1.01
TCF4-249ENST00000625716 TLL1O43897 1013 aa8.76□□□□□ -1.01
TCF4-249ENST00000625716 GFRA3O60609 400 aa8.76□□□□□ -1.01
TCF4-249ENST00000625716 PANK3Q9H999 370 aa8.76□□□□□ -1.01
TCF4-249ENST00000625716 OVOS2A0A0G2JMS6 1433 aa8.76□□□□□ -1.01
TCF4-249ENST00000625716 SMG6Q86US8 1419 aaKnown RBP8.76□□□□□ -1.01
TCF4-249ENST00000625716 RTL1A6NKG5 1358 aa8.75□□□□□ -1.01
TCF4-249ENST00000625716 SMYD5Q6GMV2 418 aa8.75□□□□□ -1.01
TCF4-249ENST00000625716 MARCH10Q8NA82 808 aaPredicted RBP8.75□□□□□ -1.01
TCF4-249ENST00000625716 PHOX2BQ99453 314 aa8.75□□□□□ -1.01
TCF4-249ENST00000625716 TMUB1Q9BVT8 246 aa8.75□□□□□ -1.01
TCF4-249ENST00000625716 KNSTRNQ9Y448 316 aa8.75□□□□□ -1.01
TCF4-249ENST00000625716 LTN1O94822 1766 aa8.75□□□□□ -1.01
TCF4-249ENST00000625716 RGPD1P0DJD0 1748 aa8.74□□□□□ -1.01
TCF4-249ENST00000625716 RGPD5Q99666 1765 aa8.74□□□□□ -1.01
TCF4-249ENST00000625716 RNF223E7ERA6 249 aa8.74□□□□□ -1.01
TCF4-249ENST00000625716 TNNT2P45379 298 aaPredicted RBP8.74□□□□□ -1.01
TCF4-249ENST00000625716 EZH2Q15910 746 aaKnown RBP8.74□□□□□ -1.01
TCF4-249ENST00000625716 NLRP7Q8WX94 980 aa8.74□□□□□ -1.01
TCF4-249ENST00000625716 PARP4Q9UKK3 1724 aaKnown RBP8.74□□□□□ -1.01
TCF4-249ENST00000625716 KIF24Q5T7B8 1368 aa8.73□□□□□ -1.01
TCF4-249ENST00000625716 DISP2A7MBM2 1401 aa8.73□□□□□ -1.01
TCF4-249ENST00000625716 MYOM1P52179 1685 aa8.73□□□□□ -1.01
TCF4-249ENST00000625716 KMT5BQ4FZB7 885 aa8.73□□□□□ -1.01
TCF4-249ENST00000625716 HSP90AB2PQ58FF8 381 aa8.73□□□□□ -1.01
TCF4-249ENST00000625716 NBPF14Q5TI25 921 aa8.73□□□□□ -1.01
TCF4-249ENST00000625716 DDX54Q8TDD1 881 aaKnown RBP8.73□□□□□ -1.01
TCF4-249ENST00000625716 RAPGEF4Q8WZA2 1011 aa8.73□□□□□ -1.01
TCF4-249ENST00000625716 CAMKK2Q96RR4 588 aa8.73□□□□□ -1.01
TCF4-249ENST00000625716 INSRP06213 1382 aa8.73□□□□□ -1.01
TCF4-249ENST00000625716 FLT4P35916 1363 aa8.73□□□□□ -1.01
TCF4-249ENST00000625716 PARD3Q8TEW0 1356 aa8.73□□□□□ -1.01
TCF4-249ENST00000625716 PPEF1O14829 653 aaPredicted RBP8.72□□□□□ -1.01
TCF4-249ENST00000625716 TATP17735 454 aaPredicted RBP8.72□□□□□ -1.01
TCF4-249ENST00000625716 MORC1Q86VD1 984 aa8.72□□□□□ -1.01
TCF4-249ENST00000625716 EMILIN1Q9Y6C2 1016 aa8.72□□□□□ -1.01
TCF4-249ENST00000625716 KIF20BQ96Q89 1820 aa8.72□□□□□ -1.01
TCF4-249ENST00000625716 LRRC37A3O60309 1634 aa8.72□□□□□ -1.01
TCF4-249ENST00000625716 TNS2Q63HR2 1409 aa8.71□□□□□ -1.01
TCF4-249ENST00000625716 PLSCR1O15162 318 aa8.71□□□□□ -1.02
TCF4-249ENST00000625716 GGCXP38435 758 aa8.71□□□□□ -1.02
TCF4-249ENST00000625716 LAPTM4AQ15012 233 aa8.71□□□□□ -1.02
TCF4-249ENST00000625716 NBPF6Q5VWK0 638 aa8.71□□□□□ -1.02
TCF4-249ENST00000625716 ZCRB1Q8TBF4 217 aaKnown RBP8.71□□□□□ -1.02
TCF4-249ENST00000625716 ACSBG1Q96GR2 724 aa8.71□□□□□ -1.02
TCF4-249ENST00000625716 NBPF4Q96M43 638 aa8.71□□□□□ -1.02
TCF4-249ENST00000625716 KIF7Q2M1P5 1343 aa8.71□□□□□ -1.02
TCF4-249ENST00000625716 NSD2O96028 1365 aa8.71□□□□□ -1.02
TCF4-249ENST00000625716 S1PR4O95977 384 aa8.7□□□□□ -1.02
TCF4-249ENST00000625716 R3HDM1Q15032 1099 aaKnown RBP8.7□□□□□ -1.02
TCF4-249ENST00000625716 PUS10Q3MIT2 529 aaKnown RBP8.7□□□□□ -1.02
TCF4-249ENST00000625716 TRIM67Q6ZTA4 783 aa8.7□□□□□ -1.02
TCF4-249ENST00000625716 USHBP1Q8N6Y0 703 aa8.7□□□□□ -1.02
TCF4-249ENST00000625716 DAXXQ9UER7 740 aaPredicted RBP8.7□□□□□ -1.02
TCF4-249ENST00000625716 WASHC2AQ641Q2 1341 aa8.7□□□□□ -1.02
TCF4-249ENST00000625716 BCL9O00512 1426 aa8.7□□□□□ -1.02
TCF4-249ENST00000625716 FAM208AQ9UK61 1670 aaKnown RBP8.69□□□□□ -1.02
TCF4-249ENST00000625716 WNK3Q9BYP7 1800 aa8.69□□□□□ -1.02
TCF4-249ENST00000625716 NRG2O14511 850 aaPredicted RBP8.69□□□□□ -1.02
TCF4-249ENST00000625716 SCUBE3Q8IX30 993 aa8.69□□□□□ -1.02
TCF4-249ENST00000625716 SYTL4Q96C24 671 aaPredicted RBP8.69□□□□□ -1.02
TCF4-249ENST00000625716 POLKQ9UBT6 870 aa8.69□□□□□ -1.02
TCF4-249ENST00000625716 TNS1Q9HBL0 1735 aaKnown RBP8.68□□□□□ -1.02
TCF4-249ENST00000625716 KCNQ2O43526 872 aa8.68□□□□□ -1.02
TCF4-249ENST00000625716 ADH1BP00325 375 aa8.68□□□□□ -1.02
TCF4-249ENST00000625716 NR1I2O75469 434 aa8.67□□□□□ -1.02
TCF4-249ENST00000625716 SLC19A1P41440 591 aa8.67□□□□□ -1.02
TCF4-249ENST00000625716 TRAF7Q6Q0C0 670 aa8.67□□□□□ -1.02
TCF4-249ENST00000625716 LIAT1Q6ZQX7 453 aa8.67□□□□□ -1.02
TCF4-249ENST00000625716 PTF1AQ7RTS3 328 aa8.67□□□□□ -1.02
TCF4-249ENST00000625716 PCDH11XQ9BZA7 1347 aa8.67□□□□□ -1.02
TCF4-249ENST00000625716 PCDH11YQ9BZA8 1340 aa8.67□□□□□ -1.02
TCF4-249ENST00000625716 PEAK1Q9H792 1746 aa8.67□□□□□ -1.02
TCF4-249ENST00000625716 PDZRN3Q9UPQ7 1066 aa8.67□□□□□ -1.02
TCF4-249ENST00000625716 SPG7Q9UQ90 795 aa8.67□□□□□ -1.02
TCF4-249ENST00000625716 EP400Q96L91 3159 aa8.66□□□□□ -1.02
TCF4-249ENST00000625716 CNGB1Q14028 1251 aaPredicted RBP8.66□□□□□ -1.02
TCF4-249ENST00000625716 TXNRD1Q16881 649 aa8.66□□□□□ -1.02
TCF4-249ENST00000625716 PLA2G2CQ5R387 149 aa8.66□□□□□ -1.02
TCF4-249ENST00000625716 CC2D1BQ5T0F9 858 aaKnown RBP8.66□□□□□ -1.02
TCF4-249ENST00000625716 GPIHBP1Q8IV16 184 aa8.66□□□□□ -1.02
TCF4-249ENST00000625716 ANKLE1Q8NAG6 615 aa8.66□□□□□ -1.02
TCF4-249ENST00000625716 STK32BQ9NY57 414 aa8.66□□□□□ -1.02
TCF4-249ENST00000625716 MEGF6O75095 1541 aa8.65□□□□□ -1.02
TCF4-249ENST00000625716 EIF4A2Q14240 407 aaKnown RBP8.65□□□□□ -1.02
TCF4-249ENST00000625716 DDX11L8A8MPP1 907 aa8.64□□□□□ -1.03
TCF4-249ENST00000625716 GCGRP47871 477 aa8.64□□□□□ -1.03
TCF4-249ENST00000625716 MORN1Q5T089 497 aa8.64□□□□□ -1.03
TCF4-249ENST00000625716 SPRYD7Q5W111 196 aa8.64□□□□□ -1.03
TCF4-249ENST00000625716 RDH13Q8NBN7 331 aa8.64□□□□□ -1.03
TCF4-249ENST00000625716 THAP11Q96EK4 314 aa8.64□□□□□ -1.03
TCF4-249ENST00000625716 ANKRD26Q9UPS8 1709 aa8.63□□□□□ -1.03
TCF4-249ENST00000625716 PER1O15534 1290 aaPredicted RBP8.63□□□□□ -1.03
TCF4-249ENST00000625716 HMGB2P26583 209 aaKnown RBP8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms