RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 EPB41L2O43491 1005 aaKnown RBP20.09■□□□□ 0.81
LDB3-208ENST00000623007 SMARCA5O60264 1052 aaPredicted RBP20.09■□□□□ 0.81
LDB3-208ENST00000623007 CWF19L2Q2TBE0 894 aaKnown RBP20.09■□□□□ 0.81
LDB3-208ENST00000623007 GPATCH3Q96I76 525 aa20.09■□□□□ 0.81
LDB3-208ENST00000623007 IGKV5-2P06315 115 aa20.08■□□□□ 0.81
LDB3-208ENST00000623007 BARGINQ6ZT62 677 aa20.08■□□□□ 0.81
LDB3-208ENST00000623007 MYD88Q99836 296 aa20.08■□□□□ 0.81
LDB3-208ENST00000623007 SPATA31A1Q5TZJ5 1347 aa20.08■□□□□ 0.8
LDB3-208ENST00000623007 TTC41PQ6P2S7 1318 aa20.08■□□□□ 0.8
LDB3-208ENST00000623007 SDSP20132 328 aa20.07■□□□□ 0.8
LDB3-208ENST00000623007 C16orf71Q8IYS4 520 aaPredicted RBP20.07■□□□□ 0.8
LDB3-208ENST00000623007 CLASRPQ8N2M8 674 aaKnown RBP20.07■□□□□ 0.8
LDB3-208ENST00000623007 BCL9O00512 1426 aa20.07■□□□□ 0.8
LDB3-208ENST00000623007 ITGB4P16144 1822 aa20.07■□□□□ 0.8
LDB3-208ENST00000623007 OS9Q13438 667 aaPredicted RBP20.07■□□□□ 0.8
LDB3-208ENST00000623007 AFDNP55196 1824 aaKnown RBP20.06■□□□□ 0.8
LDB3-208ENST00000623007 ERC2O15083 957 aa20.06■□□□□ 0.8
LDB3-208ENST00000623007 USP42Q9H9J4 1324 aaKnown RBP20.06■□□□□ 0.8
LDB3-208ENST00000623007 SLIT2O94813 1529 aa20.05■□□□□ 0.8
LDB3-208ENST00000623007 CCDC191Q8NCU4 936 aa20.05■□□□□ 0.8
LDB3-208ENST00000623007 G3BP1Q13283 466 aaKnown RBP eCLIP20.04■□□□□ 0.8
LDB3-208ENST00000623007 NUP188Q5SRE5 1749 aa20.04■□□□□ 0.8
LDB3-208ENST00000623007 JCADQ9P266 1359 aa20.04■□□□□ 0.8
LDB3-208ENST00000623007 PTCD1O75127 700 aaKnown RBP20.03■□□□□ 0.8
LDB3-208ENST00000623007 DDB1Q16531 1140 aa20.03■□□□□ 0.8
LDB3-208ENST00000623007 PIGBQ92521 554 aa20.03■□□□□ 0.8
LDB3-208ENST00000623007 SNX21Q969T3 373 aa20.03■□□□□ 0.8
LDB3-208ENST00000623007 SUCLG2Q96I99 432 aa20.03■□□□□ 0.8
LDB3-208ENST00000623007 SPATA31A5Q5VU36 1347 aa20.03■□□□□ 0.8
LDB3-208ENST00000623007 SPATA31A7Q8IWB4 1347 aa20.03■□□□□ 0.8
LDB3-208ENST00000623007 NBPF26B4DH59 902 aa20.03■□□□□ 0.8
LDB3-208ENST00000623007 RABL6Q3YEC7 729 aaPredicted RBP20.03■□□□□ 0.8
LDB3-208ENST00000623007 NBPF14Q5TI25 921 aa20.03■□□□□ 0.8
LDB3-208ENST00000623007 NBPF10Q6P3W6 841 aaKnown RBP20.03■□□□□ 0.8
LDB3-208ENST00000623007 NBPF15Q8N660 670 aa20.03■□□□□ 0.8
LDB3-208ENST00000623007 OTUD7AQ8TE49 926 aaPredicted RBP20.03■□□□□ 0.8
LDB3-208ENST00000623007 BICC1Q9H694 974 aaKnown RBP20.03■□□□□ 0.8
LDB3-208ENST00000623007 CWC25Q9NXE8 425 aaPredicted RBP20.03■□□□□ 0.8
LDB3-208ENST00000623007 TUBGCP6Q96RT7 1819 aa20.02■□□□□ 0.8
LDB3-208ENST00000623007 KIF6Q6ZMV9 814 aa20.02■□□□□ 0.8
LDB3-208ENST00000623007 HSCBQ8IWL3 235 aa20.02■□□□□ 0.8
LDB3-208ENST00000623007 ATG3Q9NT62 314 aa20.02■□□□□ 0.8
LDB3-208ENST00000623007 GLRX3O76003 335 aaKnown RBP20.01■□□□□ 0.79
LDB3-208ENST00000623007 ADAMTS2O95450 1211 aa20.01■□□□□ 0.79
LDB3-208ENST00000623007 TRIM28Q13263 835 aaKnown RBP20.01■□□□□ 0.79
LDB3-208ENST00000623007 HSP90AB3PQ58FF7 597 aa20.01■□□□□ 0.79
LDB3-208ENST00000623007 COPRSQ9NQ92 184 aa20■□□□□ 0.79
LDB3-208ENST00000623007 A0A087WZG4 1122 aa20■□□□□ 0.79
LDB3-208ENST00000623007 UBAP1LF5GYI3 381 aa20■□□□□ 0.79
LDB3-208ENST00000623007 CNTROBQ8N137 903 aa20■□□□□ 0.79
LDB3-208ENST00000623007 SPATA31A6Q5VVP1 1343 aa20■□□□□ 0.79
LDB3-208ENST00000623007 H7C1W4 665 aa19.99■□□□□ 0.79
LDB3-208ENST00000623007 IFIT2P09913 472 aaKnown RBP19.99■□□□□ 0.79
LDB3-208ENST00000623007 PIP4K2BP78356 416 aa19.99■□□□□ 0.79
LDB3-208ENST00000623007 KAZALD1Q96I82 304 aa19.99■□□□□ 0.79
LDB3-208ENST00000623007 CICQ96RK0 1608 aaPredicted RBP19.98■□□□□ 0.79
LDB3-208ENST00000623007 A1BGP04217 495 aa19.97■□□□□ 0.79
LDB3-208ENST00000623007 MCCP23508 829 aa19.97■□□□□ 0.79
LDB3-208ENST00000623007 RABEP1Q15276 862 aa19.97■□□□□ 0.79
LDB3-208ENST00000623007 UNC5CLQ8IV45 518 aa19.97■□□□□ 0.79
LDB3-208ENST00000623007 IL1RAPL2Q9NP60 686 aa19.97■□□□□ 0.79
LDB3-208ENST00000623007 ASAP1Q9ULH1 1129 aa19.97■□□□□ 0.79
LDB3-208ENST00000623007 DOT1LQ8TEK3 1739 aa19.97■□□□□ 0.79
LDB3-208ENST00000623007 TRIM6-TRIM34B2RNG4 842 aa19.97■□□□□ 0.79
LDB3-208ENST00000623007 USP26Q9BXU7 913 aa19.97■□□□□ 0.79
LDB3-208ENST00000623007 TBC1D2Q9BYX2 928 aa19.97■□□□□ 0.79
LDB3-208ENST00000623007 ECHDC1Q9NTX5 307 aa19.97■□□□□ 0.79
LDB3-208ENST00000623007 TCIRG1Q13488 830 aa19.96■□□□□ 0.79
LDB3-208ENST00000623007 RTL5Q5HYW3 569 aaPredicted RBP19.96■□□□□ 0.79
LDB3-208ENST00000623007 UBE3BQ7Z3V4 1068 aa19.96■□□□□ 0.79
LDB3-208ENST00000623007 SMARCC1Q92922 1105 aaPredicted RBP19.96■□□□□ 0.79
LDB3-208ENST00000623007 RBM42Q9BTD8 480 aaKnown RBP19.96■□□□□ 0.79
LDB3-208ENST00000623007 FBXO3Q9UK99 471 aa19.96■□□□□ 0.79
LDB3-208ENST00000623007 HIP1O00291 1037 aa19.95■□□□□ 0.78
LDB3-208ENST00000623007 CASP7P55210 303 aa19.95■□□□□ 0.78
LDB3-208ENST00000623007 ISCA1Q9BUE6 129 aa19.95■□□□□ 0.78
LDB3-208ENST00000623007 NUTM2BA6NNL0 878 aaPredicted RBP19.94■□□□□ 0.78
LDB3-208ENST00000623007 NUTM2EB1AL46 878 aaPredicted RBP19.94■□□□□ 0.78
LDB3-208ENST00000623007 VPS72Q15906 364 aa19.94■□□□□ 0.78
LDB3-208ENST00000623007 TICAM2Q86XR7 235 aa19.94■□□□□ 0.78
LDB3-208ENST00000623007 NUTM2AQ8IVF1 878 aaPredicted RBP19.94■□□□□ 0.78
LDB3-208ENST00000623007 DNAJC10Q8IXB1 793 aa19.94■□□□□ 0.78
LDB3-208ENST00000623007 PI4K2BQ8TCG2 481 aa19.94■□□□□ 0.78
LDB3-208ENST00000623007 RUFY2Q8WXA3 655 aa19.94■□□□□ 0.78
LDB3-208ENST00000623007 BCL11AQ9H165 835 aa19.94■□□□□ 0.78
LDB3-208ENST00000623007 AK9Q5TCS8 1911 aa19.94■□□□□ 0.78
LDB3-208ENST00000623007 MAP3K15Q6ZN16 1313 aa19.94■□□□□ 0.78
LDB3-208ENST00000623007 ERVV-1B6SEH8 477 aa19.94■□□□□ 0.78
LDB3-208ENST00000623007 IL6STP40189 918 aaPredicted RBP19.94■□□□□ 0.78
LDB3-208ENST00000623007 TTLL7Q6ZT98 887 aa19.94■□□□□ 0.78
LDB3-208ENST00000623007 RILPL2Q969X0 211 aa19.94■□□□□ 0.78
LDB3-208ENST00000623007 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.93■□□□□ 0.78
LDB3-208ENST00000623007 CHMLP26374 656 aa19.93■□□□□ 0.78
LDB3-208ENST00000623007 ANAPC15P60006 121 aa19.93■□□□□ 0.78
LDB3-208ENST00000623007 NUTM1Q86Y26 1132 aa19.93■□□□□ 0.78
LDB3-208ENST00000623007 ESYT1Q9BSJ8 1104 aa19.93■□□□□ 0.78
LDB3-208ENST00000623007 CCDC9Q9Y3X0 531 aaKnown RBP19.93■□□□□ 0.78
LDB3-208ENST00000623007 ZNF831Q5JPB2 1677 aa19.93■□□□□ 0.78
LDB3-208ENST00000623007 ATP5J2-PTCD1G3V325 749 aa19.92■□□□□ 0.78
LDB3-208ENST00000623007 CYP19A1P11511 503 aaPredicted RBP19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms