RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 LRSAM1Q6UWE0 723 aa15.58■□□□□ 0.08
CCDC88A-214ENST00000621814 ARHGEF25Q86VW2 580 aa15.58■□□□□ 0.08
CCDC88A-214ENST00000621814 CCDC83Q8IWF9 413 aa15.58■□□□□ 0.08
CCDC88A-214ENST00000621814 BOLA2Q9H3K6 86 aa15.58■□□□□ 0.08
CCDC88A-214ENST00000621814 BICC1Q9H694 974 aaKnown RBP15.58■□□□□ 0.08
CCDC88A-214ENST00000621814 CNPY2Q9Y2B0 182 aa15.58■□□□□ 0.08
CCDC88A-214ENST00000621814 G3BP1Q13283 466 aaKnown RBP eCLIP15.58■□□□□ 0.08
CCDC88A-214ENST00000621814 RUFY3Q7L099 469 aa15.58■□□□□ 0.08
CCDC88A-214ENST00000621814 PPP1R9BQ96SB3 815 aa15.58■□□□□ 0.08
CCDC88A-214ENST00000621814 TCEANC2Q96MN5 208 aa15.57■□□□□ 0.08
CCDC88A-214ENST00000621814 SMC3Q9UQE7 1217 aa15.57■□□□□ 0.08
CCDC88A-214ENST00000621814 LARGE1O95461 756 aa15.57■□□□□ 0.08
CCDC88A-214ENST00000621814 HOXB7P09629 217 aa15.57■□□□□ 0.08
CCDC88A-214ENST00000621814 CSB-PGBD3P0DP91 1061 aa15.57■□□□□ 0.08
CCDC88A-214ENST00000621814 KRT28Q7Z3Y7 464 aa15.57■□□□□ 0.08
CCDC88A-214ENST00000621814 NFATC2IPQ8NCF5 419 aa15.57■□□□□ 0.08
CCDC88A-214ENST00000621814 GPATCH3Q96I76 525 aa15.57■□□□□ 0.08
CCDC88A-214ENST00000621814 FAM227BQ96M60 508 aa15.57■□□□□ 0.08
CCDC88A-214ENST00000621814 TLR7Q9NYK1 1049 aaKnown RBP15.57■□□□□ 0.08
CCDC88A-214ENST00000621814 FIBPO43427 364 aa15.57■□□□□ 0.08
CCDC88A-214ENST00000621814 MBD3O95983 291 aa15.57■□□□□ 0.08
CCDC88A-214ENST00000621814 ZSCAN30Q86W11 494 aa15.57■□□□□ 0.08
CCDC88A-214ENST00000621814 WDR33Q9C0J8 1336 aaKnown RBP15.56■□□□□ 0.08
CCDC88A-214ENST00000621814 PXDNQ92626 1479 aa15.56■□□□□ 0.08
CCDC88A-214ENST00000621814 GRM8O00222 908 aa15.56■□□□□ 0.08
CCDC88A-214ENST00000621814 CHMP4AQ9BY43 222 aa15.56■□□□□ 0.08
CCDC88A-214ENST00000621814 LIMCH1Q9UPQ0 1083 aa15.56■□□□□ 0.08
CCDC88A-214ENST00000621814 PROSER2Q86WR7 435 aaPredicted RBP15.56■□□□□ 0.08
CCDC88A-214ENST00000621814 NECAB1Q8N987 351 aa15.56■□□□□ 0.08
CCDC88A-214ENST00000621814 CABLES1Q8TDN4 633 aa15.56■□□□□ 0.08
CCDC88A-214ENST00000621814 RUFY2Q8WXA3 655 aa15.55■□□□□ 0.08
CCDC88A-214ENST00000621814 EAF2Q96CJ1 260 aaPredicted RBP15.55■□□□□ 0.08
CCDC88A-214ENST00000621814 PDRG1Q9NUG6 133 aa15.55■□□□□ 0.08
CCDC88A-214ENST00000621814 NDUFB9Q9Y6M9 179 aa15.55■□□□□ 0.08
CCDC88A-214ENST00000621814 PXDNLA1KZ92 1463 aa15.55■□□□□ 0.08
CCDC88A-214ENST00000621814 FER1L4A9Z1Z3 1794 aa15.55■□□□□ 0.08
CCDC88A-214ENST00000621814 SYT1P21579 422 aa15.55■□□□□ 0.08
CCDC88A-214ENST00000621814 RAPGEF4Q8WZA2 1011 aa15.55■□□□□ 0.08
CCDC88A-214ENST00000621814 VPS37CA5D8V6 355 aaPredicted RBP15.54■□□□□ 0.08
CCDC88A-214ENST00000621814 DDX58O95786 925 aaKnown RBP15.54■□□□□ 0.08
CCDC88A-214ENST00000621814 EDC3Q96F86 508 aaKnown RBP15.54■□□□□ 0.08
CCDC88A-214ENST00000621814 MYD88Q99836 296 aa15.54■□□□□ 0.08
CCDC88A-214ENST00000621814 CHMP3Q9Y3E7 222 aa15.54■□□□□ 0.08
CCDC88A-214ENST00000621814 LRRC37A3O60309 1634 aa15.54■□□□□ 0.08
CCDC88A-214ENST00000621814 SASH1O94885 1247 aa15.54■□□□□ 0.08
CCDC88A-214ENST00000621814 PLCB2Q00722 1185 aa15.54■□□□□ 0.08
CCDC88A-214ENST00000621814 HYPKQ9NX55 129 aa15.54■□□□□ 0.08
CCDC88A-214ENST00000621814 TTC41PQ6P2S7 1318 aa15.54■□□□□ 0.08
CCDC88A-214ENST00000621814 STX6O43752 255 aa15.54■□□□□ 0.08
CCDC88A-214ENST00000621814 PTMAP06454 111 aaKnown RBP15.54■□□□□ 0.08
CCDC88A-214ENST00000621814 COPS6Q7L5N1 327 aa15.54■□□□□ 0.08
CCDC88A-214ENST00000621814 FSD1Q9BTV5 496 aa15.54■□□□□ 0.08
CCDC88A-214ENST00000621814 ALDH1L1O75891 902 aa15.53■□□□□ 0.08
CCDC88A-214ENST00000621814 COL9A3Q14050 684 aaPredicted RBP15.53■□□□□ 0.08
CCDC88A-214ENST00000621814 LINS1Q8NG48 757 aa15.53■□□□□ 0.08
CCDC88A-214ENST00000621814 XAGE3Q8WTP9 111 aa15.53■□□□□ 0.08
CCDC88A-214ENST00000621814 KAZALD1Q96I82 304 aa15.53■□□□□ 0.08
CCDC88A-214ENST00000621814 TSPY26PQ9H489 355 aa15.53■□□□□ 0.08
CCDC88A-214ENST00000621814 LTN1O94822 1766 aa15.53■□□□□ 0.08
CCDC88A-214ENST00000621814 GJB2P29033 226 aa15.53■□□□□ 0.08
CCDC88A-214ENST00000621814 NMIQ13287 307 aaPredicted RBP15.53■□□□□ 0.08
CCDC88A-214ENST00000621814 CHRNA2Q15822 529 aa15.53■□□□□ 0.08
CCDC88A-214ENST00000621814 TTC14Q96N46 770 aa15.53■□□□□ 0.08
CCDC88A-214ENST00000621814 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.53■□□□□ 0.08
CCDC88A-214ENST00000621814 NEXNQ0ZGT2 675 aa15.52■□□□□ 0.08
CCDC88A-214ENST00000621814 SYAP1Q96A49 352 aaPredicted RBP15.52■□□□□ 0.08
CCDC88A-214ENST00000621814 CYP46A1Q9Y6A2 500 aa15.52■□□□□ 0.08
CCDC88A-214ENST00000621814 ATP5J2-PTCD1G3V325 749 aa15.52■□□□□ 0.08
CCDC88A-214ENST00000621814 PTCD1O75127 700 aaKnown RBP15.52■□□□□ 0.08
CCDC88A-214ENST00000621814 ZSCAN22P10073 491 aaPredicted RBP15.52■□□□□ 0.08
CCDC88A-214ENST00000621814 ZKSCAN1P17029 563 aaPredicted RBP15.52■□□□□ 0.08
CCDC88A-214ENST00000621814 ZNF790Q6PG37 636 aa15.52■□□□□ 0.08
CCDC88A-214ENST00000621814 ERC1Q8IUD2 1116 aa15.52■□□□□ 0.08
CCDC88A-214ENST00000621814 EVI5LQ96CN4 794 aa15.52■□□□□ 0.08
CCDC88A-214ENST00000621814 RBM8AQ9Y5S9 174 aaKnown RBP15.52■□□□□ 0.08
CCDC88A-214ENST00000621814 IGKV5-2P06315 115 aa15.52■□□□□ 0.07
CCDC88A-214ENST00000621814 DDX21Q9NR30 783 aaKnown RBP eCLIP15.52■□□□□ 0.07
CCDC88A-214ENST00000621814 MARF1Q9Y4F3 1742 aaKnown RBP15.51■□□□□ 0.07
CCDC88A-214ENST00000621814 STK3Q13188 491 aa15.51■□□□□ 0.07
CCDC88A-214ENST00000621814 FERMT3Q86UX7 667 aa15.51■□□□□ 0.07
CCDC88A-214ENST00000621814 RPAP1Q9BWH6 1393 aaPredicted RBP15.51■□□□□ 0.07
CCDC88A-214ENST00000621814 EPHA10Q5JZY3 1008 aa15.51■□□□□ 0.07
CCDC88A-214ENST00000621814 USP16Q9Y5T5 823 aa15.51■□□□□ 0.07
CCDC88A-214ENST00000621814 RGPD2P0DJD1 1756 aa15.51■□□□□ 0.07
CCDC88A-214ENST00000621814 DNM1Q05193 864 aaKnown RBP15.5■□□□□ 0.07
CCDC88A-214ENST00000621814 NFAT5O94916 1531 aa15.5■□□□□ 0.07
CCDC88A-214ENST00000621814 A0A0D9SFI3 127 aa15.5■□□□□ 0.07
CCDC88A-214ENST00000621814 CHGBP05060 677 aa15.5■□□□□ 0.07
CCDC88A-214ENST00000621814 MTX1Q13505 466 aa15.5■□□□□ 0.07
CCDC88A-214ENST00000621814 PDIA6Q15084 440 aa15.5■□□□□ 0.07
CCDC88A-214ENST00000621814 ZNF496Q96IT1 587 aaPredicted RBP15.5■□□□□ 0.07
CCDC88A-214ENST00000621814 ME3Q16798 604 aa15.49■□□□□ 0.07
CCDC88A-214ENST00000621814 CREB3L3Q68CJ9 461 aa15.49■□□□□ 0.07
CCDC88A-214ENST00000621814 TTC5Q8N0Z6 440 aa15.49■□□□□ 0.07
CCDC88A-214ENST00000621814 HDAC5Q9UQL6 1122 aa15.49■□□□□ 0.07
CCDC88A-214ENST00000621814 TAF6LQ9Y6J9 622 aa15.49■□□□□ 0.07
CCDC88A-214ENST00000621814 CCDC171Q6TFL3 1326 aa15.49■□□□□ 0.07
CCDC88A-214ENST00000621814 F13A1P00488 732 aa15.49■□□□□ 0.07
CCDC88A-214ENST00000621814 FAM173BQ6P4H8 233 aa15.49■□□□□ 0.07
CCDC88A-214ENST00000621814 UBE3BQ7Z3V4 1068 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms