RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 CCDC88AQ3V6T2 1871 aa15.74■□□□□ 0.11
UPF3B-204ENST00000619445 LTBP3Q9NS15 1303 aa15.74■□□□□ 0.11
UPF3B-204ENST00000619445 GLTPD2A6NH11 291 aa15.74■□□□□ 0.11
UPF3B-204ENST00000619445 DPY19L2Q6NUT2 758 aa15.74■□□□□ 0.11
UPF3B-204ENST00000619445 MASTLQ96GX5 879 aa15.74■□□□□ 0.11
UPF3B-204ENST00000619445 ARFGEF2Q9Y6D5 1785 aa15.73■□□□□ 0.11
UPF3B-204ENST00000619445 DICER1Q9UPY3 1922 aaKnown RBP15.73■□□□□ 0.11
UPF3B-204ENST00000619445 SRGNP10124 158 aa15.73■□□□□ 0.11
UPF3B-204ENST00000619445 VEGFAP15692 232 aaPredicted RBP15.73■□□□□ 0.11
UPF3B-204ENST00000619445 RASSF7Q02833 373 aa15.73■□□□□ 0.11
UPF3B-204ENST00000619445 PLEKHF1Q96S99 279 aa15.73■□□□□ 0.11
UPF3B-204ENST00000619445 KDM3BQ7LBC6 1761 aa15.73■□□□□ 0.11
UPF3B-204ENST00000619445 FER1L6Q2WGJ9 1857 aa15.73■□□□□ 0.11
UPF3B-204ENST00000619445 COL11A2P13942 1736 aaPredicted RBP15.72■□□□□ 0.11
UPF3B-204ENST00000619445 NFKBIEO00221 500 aa15.72■□□□□ 0.11
UPF3B-204ENST00000619445 RRAGCQ9HB90 399 aa15.72■□□□□ 0.11
UPF3B-204ENST00000619445 TIAM2Q8IVF5 1701 aa15.72■□□□□ 0.11
UPF3B-204ENST00000619445 PRAMEF22A3QJZ6 481 aa15.71■□□□□ 0.11
UPF3B-204ENST00000619445 NBPF26B4DH59 902 aa15.71■□□□□ 0.11
UPF3B-204ENST00000619445 ERVV-1B6SEH8 477 aa15.71■□□□□ 0.11
UPF3B-204ENST00000619445 NPR1P16066 1061 aa15.71■□□□□ 0.11
UPF3B-204ENST00000619445 LMOD3Q0VAK6 560 aa15.71■□□□□ 0.11
UPF3B-204ENST00000619445 NBPF10Q6P3W6 841 aaKnown RBP15.71■□□□□ 0.11
UPF3B-204ENST00000619445 NBPF15Q8N660 670 aa15.71■□□□□ 0.11
UPF3B-204ENST00000619445 SMC1BQ8NDV3 1235 aa15.71■□□□□ 0.11
UPF3B-204ENST00000619445 TAOK3Q9H2K8 898 aa15.71■□□□□ 0.11
UPF3B-204ENST00000619445 BABAM1Q9NWV8 329 aa15.71■□□□□ 0.11
UPF3B-204ENST00000619445 NIP7Q9Y221 180 aaKnown RBP eCLIP15.71■□□□□ 0.11
UPF3B-204ENST00000619445 ERBB4Q15303 1308 aa15.7■□□□□ 0.1
UPF3B-204ENST00000619445 C21orf2O43822 256 aa15.7■□□□□ 0.1
UPF3B-204ENST00000619445 PRPF40BQ6NWY9 871 aaKnown RBP15.7■□□□□ 0.1
UPF3B-204ENST00000619445 NYXQ9GZU5 481 aa15.7■□□□□ 0.1
UPF3B-204ENST00000619445 KLRG2A4D1S0 409 aaPredicted RBP15.69■□□□□ 0.1
UPF3B-204ENST00000619445 GTF2E1P29083 439 aaPredicted RBP15.69■□□□□ 0.1
UPF3B-204ENST00000619445 PIP4K2AP48426 406 aaPredicted RBP15.69■□□□□ 0.1
UPF3B-204ENST00000619445 KIF6Q6ZMV9 814 aa15.69■□□□□ 0.1
UPF3B-204ENST00000619445 SLX4Q8IY92 1834 aa15.68■□□□□ 0.1
UPF3B-204ENST00000619445 ALDH1B1P30837 517 aa15.68■□□□□ 0.1
UPF3B-204ENST00000619445 EIF4A1P60842 406 aaKnown RBP15.68■□□□□ 0.1
UPF3B-204ENST00000619445 ERFEQ4G0M1 354 aa15.68■□□□□ 0.1
UPF3B-204ENST00000619445 CACNA1SQ13698 1873 aa15.68■□□□□ 0.1
UPF3B-204ENST00000619445 WDR90Q96KV7 1748 aa15.67■□□□□ 0.1
UPF3B-204ENST00000619445 CCDC93Q567U6 631 aa15.67■□□□□ 0.1
UPF3B-204ENST00000619445 CCDC24Q8N4L8 307 aa15.67■□□□□ 0.1
UPF3B-204ENST00000619445 MIS18AQ9NYP9 233 aa15.67■□□□□ 0.1
UPF3B-204ENST00000619445 MAP3K15Q6ZN16 1313 aa15.67■□□□□ 0.1
UPF3B-204ENST00000619445 IBTKQ9P2D0 1353 aaPredicted RBP15.67■□□□□ 0.1
UPF3B-204ENST00000619445 NUP98P52948 1817 aa15.66■□□□□ 0.1
UPF3B-204ENST00000619445 PRELPP51888 382 aa15.65■□□□□ 0.1
UPF3B-204ENST00000619445 RTKN2Q8IZC4 609 aa15.65■□□□□ 0.1
UPF3B-204ENST00000619445 ZNF219Q9P2Y4 722 aaPredicted RBP15.65■□□□□ 0.1
UPF3B-204ENST00000619445 TSPYL4Q9UJ04 414 aa15.65■□□□□ 0.1
UPF3B-204ENST00000619445 MYBBP1AQ9BQG0 1328 aaKnown RBP15.65■□□□□ 0.1
UPF3B-204ENST00000619445 RIC1Q4ADV7 1423 aa15.65■□□□□ 0.1
UPF3B-204ENST00000619445 RIPK4P57078 832 aa15.64■□□□□ 0.09
UPF3B-204ENST00000619445 GRIPAP1Q4V328 841 aa15.64■□□□□ 0.09
UPF3B-204ENST00000619445 CC2D2BQ6DHV5 1058 aa15.64■□□□□ 0.09
UPF3B-204ENST00000619445 DNAJC5GQ8N7S2 189 aa15.64■□□□□ 0.09
UPF3B-204ENST00000619445 RRP7AQ9Y3A4 280 aaKnown RBP15.64■□□□□ 0.09
UPF3B-204ENST00000619445 HLFQ16534 295 aa15.63■□□□□ 0.09
UPF3B-204ENST00000619445 C7orf43Q8WVR3 580 aa15.63■□□□□ 0.09
UPF3B-204ENST00000619445 IQCA1LA6NCM1 817 aa15.62■□□□□ 0.09
UPF3B-204ENST00000619445 FKBP4Q02790 459 aaKnown RBP eCLIP15.62■□□□□ 0.09
UPF3B-204ENST00000619445 CRY2Q49AN0 593 aa15.62■□□□□ 0.09
UPF3B-204ENST00000619445 PARP10Q53GL7 1025 aa15.62■□□□□ 0.09
UPF3B-204ENST00000619445 THUMPD2Q9BTF0 503 aaKnown RBP15.62■□□□□ 0.09
UPF3B-204ENST00000619445 MYL6BP14649 208 aa15.62■□□□□ 0.09
UPF3B-204ENST00000619445 TMPOP42166 694 aaKnown RBP15.62■□□□□ 0.09
UPF3B-204ENST00000619445 WDR43Q15061 677 aaKnown RBP eCLIP15.62■□□□□ 0.09
UPF3B-204ENST00000619445 GIGYF2Q6Y7W6 1299 aaKnown RBP15.62■□□□□ 0.09
UPF3B-204ENST00000619445 PPP1R42Q7Z4L9 355 aa15.62■□□□□ 0.09
UPF3B-204ENST00000619445 NGEFQ8N5V2 710 aa15.62■□□□□ 0.09
UPF3B-204ENST00000619445 KLRG1Q96E93 195 aa15.62■□□□□ 0.09
UPF3B-204ENST00000619445 FAM177BA6PVY3 158 aa15.61■□□□□ 0.09
UPF3B-204ENST00000619445 SCN4AP35499 1836 aa15.61■□□□□ 0.09
UPF3B-204ENST00000619445 RNF123Q5XPI4 1314 aa15.61■□□□□ 0.09
UPF3B-204ENST00000619445 RPGRQ92834 1020 aaKnown RBP15.61■□□□□ 0.09
UPF3B-204ENST00000619445 HOXA10P31260 410 aaPredicted RBP15.6■□□□□ 0.09
UPF3B-204ENST00000619445 DDX10Q13206 875 aaKnown RBP15.6■□□□□ 0.09
UPF3B-204ENST00000619445 HSP90AB3PQ58FF7 597 aa15.6■□□□□ 0.09
UPF3B-204ENST00000619445 IFFO2Q5TF58 517 aa15.6■□□□□ 0.09
UPF3B-204ENST00000619445 TTLL7Q6ZT98 887 aa15.59■□□□□ 0.09
UPF3B-204ENST00000619445 ZNF34Q8IZ26 560 aa15.59■□□□□ 0.09
UPF3B-204ENST00000619445 JMYQ8N9B5 988 aa15.59■□□□□ 0.09
UPF3B-204ENST00000619445 RUNDC1Q96C34 613 aa15.59■□□□□ 0.09
UPF3B-204ENST00000619445 L3MBTL3Q96JM7 780 aaPredicted RBP15.59■□□□□ 0.09
UPF3B-204ENST00000619445 PSMD1Q99460 953 aa15.59■□□□□ 0.09
UPF3B-204ENST00000619445 TMX4Q9H1E5 349 aaPredicted RBP15.59■□□□□ 0.09
UPF3B-204ENST00000619445 ZBTB3Q9H5J0 574 aa15.59■□□□□ 0.09
UPF3B-204ENST00000619445 POTECB2RU33 542 aa15.58■□□□□ 0.08
UPF3B-204ENST00000619445 RBM17Q96I25 401 aaKnown RBP15.58■□□□□ 0.08
UPF3B-204ENST00000619445 HOXB7P09629 217 aa15.57■□□□□ 0.08
UPF3B-204ENST00000619445 EIF2S2P20042 333 aaKnown RBP15.57■□□□□ 0.08
UPF3B-204ENST00000619445 GPTP24298 496 aa15.57■□□□□ 0.08
UPF3B-204ENST00000619445 CHADLQ6NUI6 762 aa15.57■□□□□ 0.08
UPF3B-204ENST00000619445 NUTM1Q86Y26 1132 aa15.57■□□□□ 0.08
UPF3B-204ENST00000619445 JDP2Q8WYK2 163 aa15.57■□□□□ 0.08
UPF3B-204ENST00000619445 CRAMP1Q96RY5 1269 aa15.57■□□□□ 0.08
UPF3B-204ENST00000619445 ABCC12Q96J65 1359 aa15.56■□□□□ 0.08
UPF3B-204ENST00000619445 UBN2Q6ZU65 1347 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 122.2 ms