RNA–Protein interactions for RNA: ENST00000614237.1

SENP3-EIF4A1-201, Transcript of SENP3-EIF4A1 readthrough (NMD candidate), humanhuman

APPRIS P1 TSL 2 BASIC

Gene SENP3-EIF4A1, Length 3,519 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1-201ENST00000614237 UQCRHLA0A096LP55 91 aa13.2□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 UQCRHP07919 91 aa13.2□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 MAPK8IP2Q13387 824 aaPredicted RBP13.2□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 DDX21Q9NR30 783 aaKnown RBP eCLIP13.2□□□□□ -0.35e-7■□□□□ 10.1
SENP3-EIF4A1-201ENST00000614237 PRPF40AO75400 957 aaKnown RBP13.19□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 CHMLP26374 656 aa13.19□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 STRCQ7RTU9 1775 aa13.19□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 PDIA6Q15084 440 aa13.19□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 SPATA31A3Q5VYP0 1347 aa13.19□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 MEGF6O75095 1541 aa13.19□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 SHANK3Q9BYB0 1731 aa13.19□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 SLC52A2Q9HAB3 445 aa13.19□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 PPP1R42Q7Z4L9 355 aa13.18□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 PI4K2BQ8TCG2 481 aa13.18□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 SPG7Q9UQ90 795 aa13.18□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 KCNQ3O43525 872 aa13.18□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 PKP1Q13835 747 aa13.18□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 EXOC6BQ9Y2D4 811 aa13.18□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 ARFGEF2Q9Y6D5 1785 aa13.18□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 PI4KAP2A4QPH2 592 aa13.18□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 ST18O60284 1047 aa13.18□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 PHKG2P15735 406 aa13.18□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 MPRIPQ6WCQ1 1025 aa13.18□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 PI4KAP1Q8N8J0 262 aa13.18□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 LINS1Q8NG48 757 aa13.18□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 RHPN1Q8TCX5 695 aa13.18□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 ZNF830Q96NB3 372 aaPredicted RBP13.18□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 NUP188Q5SRE5 1749 aa13.17□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 ATF3P18847 181 aa13.17□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 NUCB2P80303 420 aa13.17□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 ERC1Q8IUD2 1116 aa13.17□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 SNRKQ9NRH2 765 aa13.17□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 NHSL1Q5SYE7 1610 aa13.17□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 LRP10Q7Z4F1 713 aa13.17□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 CUL4AQ13619 759 aa13.16□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 ZSCAN30Q86W11 494 aa13.16□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 DDX58O95786 925 aaKnown RBP13.16□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 NBPF7P0C2Y1 421 aaPredicted RBP13.16□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 TICAM2Q86XR7 235 aa13.16□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 RBM33Q96EV2 1170 aaKnown RBP13.16□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 INTS4Q96HW7 963 aaKnown RBP13.16□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 DCAF5Q96JK2 942 aa13.16□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 PDCL3Q9H2J4 239 aa13.16□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 ZNF790Q6PG37 636 aa13.16□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 KCNB2Q92953 911 aa13.16□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 IFNL2Q8IZJ0 200 aa13.15□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 TATP17735 454 aaPredicted RBP13.15□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 C17orf53Q8N3J3 647 aaPredicted RBP13.15□□□□□ -0.3
SENP3-EIF4A1-201ENST00000614237 TPM2P07951 284 aa13.14□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 MCCP23508 829 aa13.14□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 SYCE3A1L190 88 aa13.14□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 HSPA4P34932 840 aa13.14□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 NKX1-1Q15270 411 aaPredicted RBP13.14□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 MAP3K2Q9Y2U5 619 aa13.14□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 SRGAP3O43295 1099 aa13.13□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 CBX1P83916 185 aa13.13□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 RAPGEF4Q8WZA2 1011 aa13.13□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 GDPD2Q9HCC8 539 aa13.13□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 AFDNP55196 1824 aaKnown RBP13.13□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 SOS2Q07890 1332 aaPredicted RBP13.13□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 PRIM1P49642 420 aaKnown RBP13.13□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 EIF2S2P20042 333 aaKnown RBP13.13□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 LARP1Q6PKG0 1096 aaKnown RBP13.13□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 KLHL34Q8N239 644 aa13.13□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 NECTIN2Q92692 538 aa13.12□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 RBSNQ9H1K0 784 aa13.12□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 TNS2Q63HR2 1409 aa13.12□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 SGSM2O43147 1006 aa13.12□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 SURF6O75683 361 aaKnown RBP13.12□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 GLRX3O76003 335 aaKnown RBP13.12□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 CCDC173Q0VFZ6 552 aa13.12□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 KCPQ6ZWJ8 1503 aa13.12□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 RFX7Q2KHR2 1363 aa13.12□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 GRM8O00222 908 aa13.12□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 BAG4O95429 457 aaKnown RBP13.12□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 KAZALD1Q96I82 304 aa13.12□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.11□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 CNTROBQ8N137 903 aa13.11□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 ZGPATQ8N5A5 531 aaKnown RBP13.11□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 RAD50Q92878 1312 aa13.11□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 JCADQ9P266 1359 aa13.11□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 PROSER3Q2NL68 480 aa13.11□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 METTL22Q9BUU2 404 aaPredicted RBP13.11□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 PLCH1Q4KWH8 1693 aa13.11□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 TJP1Q07157 1748 aa13.11□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 COL5A2P05997 1499 aaPredicted RBP13.1□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 LRP6O75581 1613 aa13.1□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 SPDYE4A6NLX3 237 aa13.1□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 SNRPA1P09661 255 aaKnown RBP13.1□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.1□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 RABL6Q3YEC7 729 aaPredicted RBP13.1□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 KLHL40Q2TBA0 621 aa13.09□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 UNC5CLQ8IV45 518 aa13.09□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 ERVV-2B6SEH9 535 aa13.09□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 IGKV5-2P06315 115 aa13.09□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 LSG1Q9H089 658 aaKnown RBP13.09□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 WDR17Q8IZU2 1322 aa13.09□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 NEURL1BA8MQ27 555 aa13.09□□□□□ -0.31
SENP3-EIF4A1-201ENST00000614237 HIP1O00291 1037 aa13.08□□□□□ -0.32
SENP3-EIF4A1-201ENST00000614237 CYP27B1O15528 508 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms