RNA–Protein interactions for RNA: ENST00000613459.4

HMGXB3-206, Transcript of HMG-box containing 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene HMGXB3, Length 5,567 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-206ENST00000613459 DZIP1Q86YF9 867 aaKnown RBP20.1■□□□□ 0.81
HMGXB3-206ENST00000613459 CRACR2BQ8N4Y2 399 aaPredicted RBP20.1■□□□□ 0.81
HMGXB3-206ENST00000613459 ZSCAN16Q9H4T2 348 aaPredicted RBP20.1■□□□□ 0.81
HMGXB3-206ENST00000613459 RAPGEF3O95398 923 aa20.1■□□□□ 0.81
HMGXB3-206ENST00000613459 FSIP1Q8NA03 581 aa20.1■□□□□ 0.81
HMGXB3-206ENST00000613459 MAPK8IP2Q13387 824 aaPredicted RBP20.09■□□□□ 0.81
HMGXB3-206ENST00000613459 PAXBP1Q9Y5B6 917 aa20.09■□□□□ 0.81
HMGXB3-206ENST00000613459 PIK3R4Q99570 1358 aa20.09■□□□□ 0.81
HMGXB3-206ENST00000613459 BMP15O95972 392 aa20.09■□□□□ 0.81
HMGXB3-206ENST00000613459 NUP88Q99567 741 aaPredicted RBP20.09■□□□□ 0.81
HMGXB3-206ENST00000613459 CUL7Q14999 1698 aa20.09■□□□□ 0.81
HMGXB3-206ENST00000613459 STAMBPO95630 424 aa20.09■□□□□ 0.81
HMGXB3-206ENST00000613459 DDX12PQ92771 950 aa20.09■□□□□ 0.81
HMGXB3-206ENST00000613459 TBC1D2Q9BYX2 928 aa20.09■□□□□ 0.81
HMGXB3-206ENST00000613459 CC2D2AQ9P2K1 1620 aa20.09■□□□□ 0.81
HMGXB3-206ENST00000613459 MINDY4BA8MYZ0 360 aa20.08■□□□□ 0.81
HMGXB3-206ENST00000613459 SSFA2P28290 1259 aa20.08■□□□□ 0.81
HMGXB3-206ENST00000613459 UBE2HP62256 183 aa20.08■□□□□ 0.81
HMGXB3-206ENST00000613459 CALML4Q96GE6 196 aa20.08■□□□□ 0.81
HMGXB3-206ENST00000613459 PCF11O94913 1555 aaKnown RBP20.08■□□□□ 0.81
HMGXB3-206ENST00000613459 ARHGAP45Q92619 1136 aa20.08■□□□□ 0.81
HMGXB3-206ENST00000613459 STX6O43752 255 aa20.08■□□□□ 0.8
HMGXB3-206ENST00000613459 LDHCP07864 332 aa20.08■□□□□ 0.8
HMGXB3-206ENST00000613459 CCDC178Q5BJE1 867 aa20.08■□□□□ 0.8
HMGXB3-206ENST00000613459 GIGYF2Q6Y7W6 1299 aaKnown RBP20.08■□□□□ 0.8
HMGXB3-206ENST00000613459 DHX37Q8IY37 1157 aaKnown RBP20.08■□□□□ 0.8
HMGXB3-206ENST00000613459 TTC21AQ8NDW8 1320 aa20.08■□□□□ 0.8
HMGXB3-206ENST00000613459 GOLIM4O00461 696 aa20.08■□□□□ 0.8
HMGXB3-206ENST00000613459 SMARCA5O60264 1052 aaPredicted RBP20.08■□□□□ 0.8
HMGXB3-206ENST00000613459 TUBB4AP04350 444 aa20.08■□□□□ 0.8
HMGXB3-206ENST00000613459 BMS1Q14692 1282 aaKnown RBP20.08■□□□□ 0.8
HMGXB3-206ENST00000613459 ANKRD36BQ8N2N9 1353 aa20.07■□□□□ 0.8
HMGXB3-206ENST00000613459 IFIT3O14879 490 aaKnown RBP20.07■□□□□ 0.8
HMGXB3-206ENST00000613459 ZPR1O75312 459 aa20.07■□□□□ 0.8
HMGXB3-206ENST00000613459 NLRP5P59047 1200 aa20.07■□□□□ 0.8
HMGXB3-206ENST00000613459 PPP4R3BQ5MIZ7 849 aa20.07■□□□□ 0.8
HMGXB3-206ENST00000613459 SMARCC1Q92922 1105 aaPredicted RBP20.07■□□□□ 0.8
HMGXB3-206ENST00000613459 CCDC113Q9H0I3 377 aa20.07■□□□□ 0.8
HMGXB3-206ENST00000613459 TCP11L1Q9NUJ3 509 aa20.07■□□□□ 0.8
HMGXB3-206ENST00000613459 USP25Q9UHP3 1055 aa20.07■□□□□ 0.8
HMGXB3-206ENST00000613459 ABCA10Q8WWZ4 1543 aa20.07■□□□□ 0.8
HMGXB3-206ENST00000613459 IFI16Q16666 785 aaKnown RBP20.07■□□□□ 0.8
HMGXB3-206ENST00000613459 ANAPC15P60006 121 aa20.07■□□□□ 0.8
HMGXB3-206ENST00000613459 RNF187Q5TA31 235 aaPredicted RBP20.07■□□□□ 0.8
HMGXB3-206ENST00000613459 KLHL10Q6JEL2 608 aa20.07■□□□□ 0.8
HMGXB3-206ENST00000613459 KLHL40Q2TBA0 621 aa20.06■□□□□ 0.8
HMGXB3-206ENST00000613459 HOOK3Q86VS8 718 aa20.06■□□□□ 0.8
HMGXB3-206ENST00000613459 RALGAPBQ86X10 1494 aa20.06■□□□□ 0.8
HMGXB3-206ENST00000613459 RMND1Q9NWS8 449 aa20.06■□□□□ 0.8
HMGXB3-206ENST00000613459 POLR3GO15318 223 aaPredicted RBP20.06■□□□□ 0.8
HMGXB3-206ENST00000613459 CCDC171Q6TFL3 1326 aa20.05■□□□□ 0.8
HMGXB3-206ENST00000613459 FLIIQ13045 1269 aa20.05■□□□□ 0.8
HMGXB3-206ENST00000613459 ARHGEF11O15085 1522 aa20.05■□□□□ 0.8
HMGXB3-206ENST00000613459 ADCY5O95622 1261 aa20.05■□□□□ 0.8
HMGXB3-206ENST00000613459 IARSP41252 1262 aaKnown RBP20.05■□□□□ 0.8
HMGXB3-206ENST00000613459 PHF23Q9BUL5 403 aaPredicted RBP20.05■□□□□ 0.8
HMGXB3-206ENST00000613459 GJB2P29033 226 aa20.05■□□□□ 0.8
HMGXB3-206ENST00000613459 SNW1Q13573 536 aaKnown RBP20.05■□□□□ 0.8
HMGXB3-206ENST00000613459 C16orf45Q96MC5 204 aaPredicted RBP20.05■□□□□ 0.8
HMGXB3-206ENST00000613459 CTR9Q6PD62 1173 aa20.04■□□□□ 0.8
HMGXB3-206ENST00000613459 ABCC5O15440 1437 aa20.04■□□□□ 0.8
HMGXB3-206ENST00000613459 CCDC172P0C7W6 258 aa20.04■□□□□ 0.8
HMGXB3-206ENST00000613459 TRIM27P14373 513 aa20.04■□□□□ 0.8
HMGXB3-206ENST00000613459 GSTTP1A0A1W2PQM5 241 aa20.04■□□□□ 0.8
HMGXB3-206ENST00000613459 RANBP6O60518 1105 aaKnown RBP20.04■□□□□ 0.8
HMGXB3-206ENST00000613459 MTIF2P46199 727 aaKnown RBP20.04■□□□□ 0.8
HMGXB3-206ENST00000613459 TTC22Q5TAA0 569 aa20.04■□□□□ 0.8
HMGXB3-206ENST00000613459 SPTY2D1Q68D10 685 aaPredicted RBP20.04■□□□□ 0.8
HMGXB3-206ENST00000613459 WASLO00401 505 aaPredicted RBP20.04■□□□□ 0.8
HMGXB3-206ENST00000613459 CCDC175P0C221 793 aa20.03■□□□□ 0.8
HMGXB3-206ENST00000613459 HDAC1Q13547 482 aaPredicted RBP20.03■□□□□ 0.8
HMGXB3-206ENST00000613459 TDRD12Q587J7 1177 aaKnown RBP20.03■□□□□ 0.8
HMGXB3-206ENST00000613459 GOPCQ9HD26 462 aa20.03■□□□□ 0.8
HMGXB3-206ENST00000613459 UQCRFS1P1P0C7P4 283 aa20.03■□□□□ 0.8
HMGXB3-206ENST00000613459 GTF2F1P35269 517 aaKnown RBP eCLIP20.03■□□□□ 0.8
HMGXB3-206ENST00000613459 TRAF1Q13077 416 aa20.03■□□□□ 0.8
HMGXB3-206ENST00000613459 CCDC102BQ68D86 513 aa20.03■□□□□ 0.8
HMGXB3-206ENST00000613459 PIBF1Q8WXW3 757 aa20.03■□□□□ 0.8
HMGXB3-206ENST00000613459 NCOA7Q8NI08 942 aa20.03■□□□□ 0.8
HMGXB3-206ENST00000613459 CEP135Q66GS9 1140 aa20.03■□□□□ 0.8
HMGXB3-206ENST00000613459 PDE4BQ07343 736 aa20.02■□□□□ 0.8
HMGXB3-206ENST00000613459 CCDC96Q2M329 555 aa20.02■□□□□ 0.8
HMGXB3-206ENST00000613459 TBC1D9Q6ZT07 1266 aa20.02■□□□□ 0.8
HMGXB3-206ENST00000613459 TMC6Q7Z403 805 aa20.02■□□□□ 0.8
HMGXB3-206ENST00000613459 NEK1Q96PY6 1258 aa20.02■□□□□ 0.8
HMGXB3-206ENST00000613459 CDC5LQ99459 802 aaKnown RBP20.02■□□□□ 0.8
HMGXB3-206ENST00000613459 THUMPD2Q9BTF0 503 aaKnown RBP20.02■□□□□ 0.8
HMGXB3-206ENST00000613459 TRMT112Q9UI30 125 aaKnown RBP20.02■□□□□ 0.8
HMGXB3-206ENST00000613459 WDHD1O75717 1129 aaPredicted RBP20.02■□□□□ 0.8
HMGXB3-206ENST00000613459 ZFYP08048 801 aaPredicted RBP20.02■□□□□ 0.8
HMGXB3-206ENST00000613459 XRCC6P12956 609 aaKnown RBP eCLIP20.02■□□□□ 0.88e-6■■□□□ 12.6
HMGXB3-206ENST00000613459 ZC3H6P61129 1189 aaKnown RBP20.02■□□□□ 0.8
HMGXB3-206ENST00000613459 CKAP4Q07065 602 aaKnown RBP20.02■□□□□ 0.8
HMGXB3-206ENST00000613459 TBC1D32Q96NH3 1257 aa20.02■□□□□ 0.8
HMGXB3-206ENST00000613459 CTAGE1Q96RT6 745 aa20.02■□□□□ 0.8
HMGXB3-206ENST00000613459 CCDC8Q9H0W5 538 aaPredicted RBP20.02■□□□□ 0.8
HMGXB3-206ENST00000613459 NF2P35240 595 aa20.02■□□□□ 0.79
HMGXB3-206ENST00000613459 SPECC1LQ69YQ0 1117 aa20.02■□□□□ 0.79
HMGXB3-206ENST00000613459 SPINK5Q9NQ38 1064 aaPredicted RBP20.02■□□□□ 0.79
HMGXB3-206ENST00000613459 GTPBP4Q9BZE4 634 aaKnown RBP20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms