RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 DDX19AQ9NUU7 478 aaKnown RBP16.12■□□□□ 0.17
GGA3-220ENST00000613421 USP25Q9UHP3 1055 aa16.12■□□□□ 0.17
GGA3-220ENST00000613421 ANKRD18BA2A2Z9 1011 aa16.12■□□□□ 0.17
GGA3-220ENST00000613421 CCAR1Q8IX12 1150 aaKnown RBP16.12■□□□□ 0.17
GGA3-220ENST00000613421 CEP131Q9UPN4 1083 aa16.12■□□□□ 0.17
GGA3-220ENST00000613421 ZNF652Q9Y2D9 606 aa16.12■□□□□ 0.17
GGA3-220ENST00000613421 ZBTB7BO15156 539 aaPredicted RBP16.11■□□□□ 0.17
GGA3-220ENST00000613421 MAP3K12Q12852 859 aa16.11■□□□□ 0.17
GGA3-220ENST00000613421 PLEKHM2Q8IWE5 1019 aa16.11■□□□□ 0.17
GGA3-220ENST00000613421 ZNHIT6Q9NWK9 470 aaKnown RBP16.11■□□□□ 0.17
GGA3-220ENST00000613421 ZSCAN23Q3MJ62 389 aa16.11■□□□□ 0.17
GGA3-220ENST00000613421 NEK1Q96PY6 1258 aa16.11■□□□□ 0.17
GGA3-220ENST00000613421 NCKAP5LQ9HCH0 1330 aa16.11■□□□□ 0.17
GGA3-220ENST00000613421 UBE2HP62256 183 aa16.11■□□□□ 0.17
GGA3-220ENST00000613421 CCT2P78371 535 aaKnown RBP16.11■□□□□ 0.17
GGA3-220ENST00000613421 KSR2Q6VAB6 950 aa16.11■□□□□ 0.17
GGA3-220ENST00000613421 ERCC4Q92889 916 aaPredicted RBP16.11■□□□□ 0.17
GGA3-220ENST00000613421 CKAP2LQ8IYA6 745 aa16.1■□□□□ 0.17
GGA3-220ENST00000613421 EYA1Q99502 592 aa16.1■□□□□ 0.17
GGA3-220ENST00000613421 TRIM35Q9UPQ4 493 aa16.1■□□□□ 0.17
GGA3-220ENST00000613421 MAP3K5Q99683 1374 aa16.1■□□□□ 0.17
GGA3-220ENST00000613421 GOLGA8BA8MQT2 603 aa16.1■□□□□ 0.17
GGA3-220ENST00000613421 CTAGE5O15320 804 aa16.1■□□□□ 0.17
GGA3-220ENST00000613421 ATP2B2Q01814 1243 aa16.1■□□□□ 0.17
GGA3-220ENST00000613421 SLC5A1P13866 664 aa16.1■□□□□ 0.17
GGA3-220ENST00000613421 TRPM2O94759 1503 aa16.1■□□□□ 0.17
GGA3-220ENST00000613421 EDC4Q6P2E9 1401 aaKnown RBP16.1■□□□□ 0.17
GGA3-220ENST00000613421 MBD5Q9P267 1494 aa16.1■□□□□ 0.17
GGA3-220ENST00000613421 GRM8O00222 908 aa16.1■□□□□ 0.17
GGA3-220ENST00000613421 KRT18P05783 430 aaKnown RBP16.1■□□□□ 0.17
GGA3-220ENST00000613421 ZSCAN22P10073 491 aaPredicted RBP16.09■□□□□ 0.17
GGA3-220ENST00000613421 XAGE3Q8WTP9 111 aa16.09■□□□□ 0.17
GGA3-220ENST00000613421 TFIP11Q9UBB9 837 aaKnown RBP16.09■□□□□ 0.17
GGA3-220ENST00000613421 CCDC196A0A1B0GTZ2 297 aa16.09■□□□□ 0.17
GGA3-220ENST00000613421 IL13P35225 146 aa16.09■□□□□ 0.17
GGA3-220ENST00000613421 JARID2Q92833 1246 aaPredicted RBP16.09■□□□□ 0.17
GGA3-220ENST00000613421 KDM5AP29375 1690 aaKnown RBP16.09■□□□□ 0.17
GGA3-220ENST00000613421 MINDY4BA8MYZ0 360 aa16.09■□□□□ 0.17
GGA3-220ENST00000613421 CFAP100Q494V2 611 aa16.09■□□□□ 0.17
GGA3-220ENST00000613421 TEX13AQ9BXU3 409 aaPredicted RBP16.09■□□□□ 0.17
GGA3-220ENST00000613421 KDM5CP41229 1560 aa16.09■□□□□ 0.17
GGA3-220ENST00000613421 CHRNA2Q15822 529 aa16.09■□□□□ 0.17
GGA3-220ENST00000613421 GPTP24298 496 aa16.08■□□□□ 0.17
GGA3-220ENST00000613421 CAVIN4Q5BKX8 364 aa16.08■□□□□ 0.17
GGA3-220ENST00000613421 MSH6P52701 1360 aa16.08■□□□□ 0.16
GGA3-220ENST00000613421 MAP3K19Q56UN5 1328 aa16.08■□□□□ 0.16
GGA3-220ENST00000613421 SETQ01105 290 aaPredicted RBP16.08■□□□□ 0.16
GGA3-220ENST00000613421 FAM177A1Q8N128 213 aaPredicted RBP16.08■□□□□ 0.16
GGA3-220ENST00000613421 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.08■□□□□ 0.16
GGA3-220ENST00000613421 COPS6Q7L5N1 327 aa16.08■□□□□ 0.16
GGA3-220ENST00000613421 RAB3GAP1Q15042 981 aa16.07■□□□□ 0.16
GGA3-220ENST00000613421 SNRKQ9NRH2 765 aa16.07■□□□□ 0.16
GGA3-220ENST00000613421 ZMYM3Q14202 1370 aa16.07■□□□□ 0.16
GGA3-220ENST00000613421 LRSAM1Q6UWE0 723 aa16.07■□□□□ 0.16
GGA3-220ENST00000613421 PIBF1Q8WXW3 757 aa16.07■□□□□ 0.16
GGA3-220ENST00000613421 RBM8AQ9Y5S9 174 aaKnown RBP16.07■□□□□ 0.16
GGA3-220ENST00000613421 SLC12A7Q9Y666 1083 aa16.07■□□□□ 0.16
GGA3-220ENST00000613421 LDHAL6AQ6ZMR3 332 aa16.07■□□□□ 0.16
GGA3-220ENST00000613421 CADPS2Q86UW7 1296 aa16.07■□□□□ 0.16
GGA3-220ENST00000613421 SLC39A6Q13433 755 aa16.07■□□□□ 0.16
GGA3-220ENST00000613421 FSIP1Q8NA03 581 aa16.07■□□□□ 0.16
GGA3-220ENST00000613421 SFPQP23246 707 aaKnown RBP eCLIP16.06■□□□□ 0.16
GGA3-220ENST00000613421 DDX46Q7L014 1031 aaKnown RBP16.06■□□□□ 0.16
GGA3-220ENST00000613421 PLXNC1O60486 1568 aa16.06■□□□□ 0.16
GGA3-220ENST00000613421 MYO5CQ9NQX4 1742 aa16.06■□□□□ 0.16
GGA3-220ENST00000613421 TTF1Q15361 905 aaPredicted RBP16.06■□□□□ 0.16
GGA3-220ENST00000613421 TTC41PQ6P2S7 1318 aa16.06■□□□□ 0.16
GGA3-220ENST00000613421 XRCC6P12956 609 aaKnown RBP eCLIP16.06■□□□□ 0.161e-6■■■■□ 19.8
GGA3-220ENST00000613421 CT47A1Q5JQC4 288 aaPredicted RBP16.06■□□□□ 0.16
GGA3-220ENST00000613421 LRRC59Q96AG4 307 aaKnown RBP16.06■□□□□ 0.16
GGA3-220ENST00000613421 CLIP2Q9UDT6 1046 aa16.06■□□□□ 0.16
GGA3-220ENST00000613421 ABCA8O94911 1581 aa16.06■□□□□ 0.16
GGA3-220ENST00000613421 SOS1Q07889 1333 aaPredicted RBP16.06■□□□□ 0.16
GGA3-220ENST00000613421 GOLGA8AA7E2F4 631 aa16.06■□□□□ 0.16
GGA3-220ENST00000613421 RRP9O43818 475 aaKnown RBP16.06■□□□□ 0.16
GGA3-220ENST00000613421 NECAB1Q8N987 351 aa16.06■□□□□ 0.16
GGA3-220ENST00000613421 LINS1Q8NG48 757 aa16.06■□□□□ 0.16
GGA3-220ENST00000613421 IFIT3O14879 490 aaKnown RBP16.05■□□□□ 0.16
GGA3-220ENST00000613421 HOXC9P31274 260 aa16.05■□□□□ 0.16
GGA3-220ENST00000613421 UVSSAQ2YD98 709 aa16.05■□□□□ 0.16
GGA3-220ENST00000613421 RNF41Q9H4P4 317 aaPredicted RBP16.05■□□□□ 0.16
GGA3-220ENST00000613421 ADCY5O95622 1261 aa16.05■□□□□ 0.16
GGA3-220ENST00000613421 CDR1P51861 262 aa16.05■□□□□ 0.16
GGA3-220ENST00000613421 USP16Q9Y5T5 823 aa16.05■□□□□ 0.16
GGA3-220ENST00000613421 MCM5P33992 734 aa16.04■□□□□ 0.16
GGA3-220ENST00000613421 PA2G4Q9UQ80 394 aaKnown RBP16.04■□□□□ 0.16
GGA3-220ENST00000613421 HAND2P61296 217 aa16.04■□□□□ 0.16
GGA3-220ENST00000613421 BRF1Q92994 677 aa16.04■□□□□ 0.16
GGA3-220ENST00000613421 USP26Q9BXU7 913 aa16.04■□□□□ 0.16
GGA3-220ENST00000613421 SSRP1Q08945 709 aaKnown RBP16.04■□□□□ 0.16
GGA3-220ENST00000613421 KIF2AO00139 706 aaPredicted RBP16.04■□□□□ 0.16
GGA3-220ENST00000613421 DEF6Q9H4E7 631 aa16.03■□□□□ 0.16
GGA3-220ENST00000613421 EXOC5O00471 708 aa16.03■□□□□ 0.16
GGA3-220ENST00000613421 PTPN14Q15678 1187 aa16.03■□□□□ 0.16
GGA3-220ENST00000613421 CCDC82Q8N4S0 544 aa16.03■□□□□ 0.16
GGA3-220ENST00000613421 ZSCAN16Q9H4T2 348 aaPredicted RBP16.03■□□□□ 0.16
GGA3-220ENST00000613421 CNPY2Q9Y2B0 182 aa16.03■□□□□ 0.16
GGA3-220ENST00000613421 SAMD9LQ8IVG5 1584 aa16.03■□□□□ 0.16
GGA3-220ENST00000613421 MAGI2Q86UL8 1455 aa16.03■□□□□ 0.16
GGA3-220ENST00000613421 RBM25P49756 843 aaKnown RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms