RNA–Protein interactions for RNA: ENST00000609574.1

HDDC2-210, Transcript of HD domain containing 2, humanhuman

TSL 2

Gene HDDC2, Length 607 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-210ENST00000609574 CCDC93Q567U6 631 aa21.14■□□□□ 0.97
HDDC2-210ENST00000609574 TPTE2Q6XPS3 522 aa21.14■□□□□ 0.97
HDDC2-210ENST00000609574 MKRN1Q9UHC7 482 aaKnown RBP21.14■□□□□ 0.97
HDDC2-210ENST00000609574 SNRPA1P09661 255 aaKnown RBP21.13■□□□□ 0.97
HDDC2-210ENST00000609574 NPR1P16066 1061 aa21.13■□□□□ 0.97
HDDC2-210ENST00000609574 GTF2E1P29083 439 aaPredicted RBP21.12■□□□□ 0.97
HDDC2-210ENST00000609574 PRKAR2BP31323 418 aa21.12■□□□□ 0.97
HDDC2-210ENST00000609574 LDHDQ86WU2 507 aa21.12■□□□□ 0.97
HDDC2-210ENST00000609574 DLEC1Q9Y238 1755 aa21.12■□□□□ 0.97
HDDC2-210ENST00000609574 NPC1L1Q9UHC9 1359 aa21.11■□□□□ 0.97
HDDC2-210ENST00000609574 RTKN2Q8IZC4 609 aa21.11■□□□□ 0.97
HDDC2-210ENST00000609574 AIDAQ96BJ3 306 aa21.11■□□□□ 0.97
HDDC2-210ENST00000609574 CLEC11AQ9Y240 323 aa21.11■□□□□ 0.97
HDDC2-210ENST00000609574 USP16Q9Y5T5 823 aa21.11■□□□□ 0.97
HDDC2-210ENST00000609574 ALDH1B1P30837 517 aa21.1■□□□□ 0.97
HDDC2-210ENST00000609574 PCNTO95613 3336 aa21.09■□□□□ 0.97
HDDC2-210ENST00000609574 KCNQ3O43525 872 aa21.09■□□□□ 0.97
HDDC2-210ENST00000609574 EAPPQ56P03 285 aaPredicted RBP21.09■□□□□ 0.97
HDDC2-210ENST00000609574 PHACTR3Q96KR7 559 aa21.09■□□□□ 0.97
HDDC2-210ENST00000609574 NIP7Q9Y221 180 aaKnown RBP eCLIP21.09■□□□□ 0.97
HDDC2-210ENST00000609574 TIAM2Q8IVF5 1701 aa21.09■□□□□ 0.97
HDDC2-210ENST00000609574 CEMIPQ8WUJ3 1361 aa21.09■□□□□ 0.97
HDDC2-210ENST00000609574 UBR2Q8IWV8 1755 aa21.08■□□□□ 0.97
HDDC2-210ENST00000609574 U2AF1L5P0DN76 240 aaPredicted RBP21.08■□□□□ 0.97
HDDC2-210ENST00000609574 U2AF1Q01081 240 aaKnown RBP eCLIP21.08■□□□□ 0.97
HDDC2-210ENST00000609574 FKBP4Q02790 459 aaKnown RBP eCLIP21.08■□□□□ 0.97
HDDC2-210ENST00000609574 TAF1DQ9H5J8 278 aaPredicted RBP21.08■□□□□ 0.97
HDDC2-210ENST00000609574 RGL2O15211 777 aa21.07■□□□□ 0.96
HDDC2-210ENST00000609574 NEFMP07197 916 aa21.07■□□□□ 0.96
HDDC2-210ENST00000609574 PIP4K2AP48426 406 aaPredicted RBP21.07■□□□□ 0.96
HDDC2-210ENST00000609574 L3MBTL3Q96JM7 780 aaPredicted RBP21.07■□□□□ 0.96
HDDC2-210ENST00000609574 HACL1Q9UJ83 578 aa21.07■□□□□ 0.96
HDDC2-210ENST00000609574 TMEM88BA6NKF7 163 aa21.06■□□□□ 0.96
HDDC2-210ENST00000609574 FAM177BA6PVY3 158 aa21.06■□□□□ 0.96
HDDC2-210ENST00000609574 POTEIP0CG38 1075 aa21.06■□□□□ 0.96
HDDC2-210ENST00000609574 POTEJP0CG39 1038 aa21.06■□□□□ 0.96
HDDC2-210ENST00000609574 PNMA8AQ86V59 439 aaPredicted RBP21.06■□□□□ 0.96
HDDC2-210ENST00000609574 RSPH6AQ9H0K4 717 aa21.06■□□□□ 0.96
HDDC2-210ENST00000609574 CCDC88AQ3V6T2 1871 aa21.06■□□□□ 0.96
HDDC2-210ENST00000609574 HTATSF1O43719 755 aaKnown RBP21.05■□□□□ 0.96
HDDC2-210ENST00000609574 C7orf43Q8WVR3 580 aa21.05■□□□□ 0.96
HDDC2-210ENST00000609574 ZNF277Q9NRM2 450 aaPredicted RBP21.05■□□□□ 0.96
HDDC2-210ENST00000609574 MCM10Q7L590 875 aa21.04■□□□□ 0.96
HDDC2-210ENST00000609574 JDP2Q8WYK2 163 aa21.04■□□□□ 0.96
HDDC2-210ENST00000609574 VIRMAQ69YN4 1812 aaKnown RBP21.04■□□□□ 0.96
HDDC2-210ENST00000609574 CNTNAP1P78357 1384 aa21.03■□□□□ 0.96
HDDC2-210ENST00000609574 KLRG2A4D1S0 409 aaPredicted RBP21.03■□□□□ 0.96
HDDC2-210ENST00000609574 CTCFP49711 727 aaPredicted RBP21.03■□□□□ 0.96
HDDC2-210ENST00000609574 NYXQ9GZU5 481 aa21.03■□□□□ 0.96
HDDC2-210ENST00000609574 SCN7AQ01118 1682 aa21.02■□□□□ 0.96
HDDC2-210ENST00000609574 COL3A1P02461 1466 aaPredicted RBP21.02■□□□□ 0.96
HDDC2-210ENST00000609574 PRAMEF22A3QJZ6 481 aa21.02■□□□□ 0.96
HDDC2-210ENST00000609574 EPHX2P34913 555 aa21.02■□□□□ 0.96
HDDC2-210ENST00000609574 TAF7Q15545 349 aaPredicted RBP21.02■□□□□ 0.96
HDDC2-210ENST00000609574 SYNE4Q8N205 404 aa21.02■□□□□ 0.96
HDDC2-210ENST00000609574 PRDM10Q9NQV6 1147 aa21.02■□□□□ 0.96
HDDC2-210ENST00000609574 FER1L6Q2WGJ9 1857 aa21.02■□□□□ 0.96
HDDC2-210ENST00000609574 ANKRD31Q8N7Z5 1873 aa21.02■□□□□ 0.96
HDDC2-210ENST00000609574 IARSP41252 1262 aaKnown RBP21.01■□□□□ 0.95
HDDC2-210ENST00000609574 CC2D2BQ6DHV5 1058 aa21.01■□□□□ 0.95
HDDC2-210ENST00000609574 TMX4Q9H1E5 349 aaPredicted RBP21.01■□□□□ 0.95
HDDC2-210ENST00000609574 PASKQ96RG2 1323 aa21.01■□□□□ 0.95
HDDC2-210ENST00000609574 EIF6P56537 245 aaKnown RBP21■□□□□ 0.95
HDDC2-210ENST00000609574 PNISRQ8TF01 805 aaKnown RBP21■□□□□ 0.95
HDDC2-210ENST00000609574 SLX4Q8IY92 1834 aa20.99■□□□□ 0.95
HDDC2-210ENST00000609574 FOXN1O15353 648 aa20.99■□□□□ 0.95
HDDC2-210ENST00000609574 LMOD1P29536 600 aaPredicted RBP20.99■□□□□ 0.95
HDDC2-210ENST00000609574 VEGFBP49765 207 aa20.99■□□□□ 0.95
HDDC2-210ENST00000609574 GRIPAP1Q4V328 841 aa20.99■□□□□ 0.95
HDDC2-210ENST00000609574 CNTROBQ8N137 903 aa20.99■□□□□ 0.95
HDDC2-210ENST00000609574 GPC2Q8N158 579 aa20.99■□□□□ 0.95
HDDC2-210ENST00000609574 NGEFQ8N5V2 710 aa20.99■□□□□ 0.95
HDDC2-210ENST00000609574 DICER1Q9UPY3 1922 aaKnown RBP20.99■□□□□ 0.95
HDDC2-210ENST00000609574 NBPF26B4DH59 902 aa20.98■□□□□ 0.95
HDDC2-210ENST00000609574 ITGBL1O95965 494 aaPredicted RBP20.98■□□□□ 0.95
HDDC2-210ENST00000609574 DEFB115Q30KQ5 88 aa20.98■□□□□ 0.95
HDDC2-210ENST00000609574 NBPF10Q6P3W6 841 aaKnown RBP20.98■□□□□ 0.95
HDDC2-210ENST00000609574 KIF6Q6ZMV9 814 aa20.98■□□□□ 0.95
HDDC2-210ENST00000609574 NBPF15Q8N660 670 aa20.98■□□□□ 0.95
HDDC2-210ENST00000609574 RPGRQ92834 1020 aaKnown RBP20.98■□□□□ 0.95
HDDC2-210ENST00000609574 ZNF541Q9H0D2 1346 aa20.98■□□□□ 0.95
HDDC2-210ENST00000609574 COL11A2P13942 1736 aaPredicted RBP20.98■□□□□ 0.95
HDDC2-210ENST00000609574 FZD9O00144 591 aa20.97■□□□□ 0.95
HDDC2-210ENST00000609574 DCTN1Q14203 1278 aa20.97■□□□□ 0.95
HDDC2-210ENST00000609574 PSMD1Q99460 953 aa20.97■□□□□ 0.95
HDDC2-210ENST00000609574 ERVV-1B6SEH8 477 aa20.96■□□□□ 0.95
HDDC2-210ENST00000609574 HLFQ16534 295 aa20.96■□□□□ 0.95
HDDC2-210ENST00000609574 ABT1Q9ULW3 272 aaKnown RBP20.96■□□□□ 0.95
HDDC2-210ENST00000609574 GJA3Q9Y6H8 435 aa20.96■□□□□ 0.95
HDDC2-210ENST00000609574 RNF123Q5XPI4 1314 aa20.96■□□□□ 0.95
HDDC2-210ENST00000609574 MAP2K1Q02750 393 aaPredicted RBP20.95■□□□□ 0.94
HDDC2-210ENST00000609574 OLFM4Q6UX06 510 aa20.95■□□□□ 0.94
HDDC2-210ENST00000609574 SIPA1L3O60292 1781 aaPredicted RBP20.95■□□□□ 0.94
HDDC2-210ENST00000609574 PPP2R1AP30153 589 aa20.94■□□□□ 0.94
HDDC2-210ENST00000609574 MAP1SQ66K74 1059 aaPredicted RBP20.94■□□□□ 0.94
HDDC2-210ENST00000609574 RBM17Q96I25 401 aaKnown RBP20.94■□□□□ 0.94
HDDC2-210ENST00000609574 MIS18AQ9NYP9 233 aa20.94■□□□□ 0.94
HDDC2-210ENST00000609574 RRP7AQ9Y3A4 280 aaKnown RBP20.94■□□□□ 0.94
HDDC2-210ENST00000609574 SCN4AP35499 1836 aa20.93■□□□□ 0.94
HDDC2-210ENST00000609574 LARGE2Q8N3Y3 721 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms