RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 JAKMIP1Q96N16 626 aaKnown RBP12.31□□□□□ -0.44
LIG1-220ENST00000601091 EYA1Q99502 592 aa12.31□□□□□ -0.44
LIG1-220ENST00000601091 FLT4P35916 1363 aa12.31□□□□□ -0.44
LIG1-220ENST00000601091 MSH6P52701 1360 aa12.31□□□□□ -0.44
LIG1-220ENST00000601091 PIK3R4Q99570 1358 aa12.31□□□□□ -0.44
LIG1-220ENST00000601091 ERICH4A6NGS2 130 aa12.31□□□□□ -0.44
LIG1-220ENST00000601091 GSPT1P15170 499 aaKnown RBP12.31□□□□□ -0.44
LIG1-220ENST00000601091 ZGPATQ8N5A5 531 aaKnown RBP12.31□□□□□ -0.44
LIG1-220ENST00000601091 KCNH5Q8NCM2 988 aa12.31□□□□□ -0.44
LIG1-220ENST00000601091 SIRT1Q96EB6 747 aa12.31□□□□□ -0.44
LIG1-220ENST00000601091 YY1AP1Q9H869 796 aa12.31□□□□□ -0.44
LIG1-220ENST00000601091 PDRG1Q9NUG6 133 aa12.31□□□□□ -0.44
LIG1-220ENST00000601091 AATKQ6ZMQ8 1374 aa12.3□□□□□ -0.44
LIG1-220ENST00000601091 UQCRHLA0A096LP55 91 aa12.3□□□□□ -0.44
LIG1-220ENST00000601091 GOLGA6L19H0YKK7 550 aa12.3□□□□□ -0.44
LIG1-220ENST00000601091 PES1O00541 588 aaKnown RBP12.3□□□□□ -0.44
LIG1-220ENST00000601091 UQCRHP07919 91 aa12.3□□□□□ -0.44
LIG1-220ENST00000601091 CCDC172P0C7W6 258 aa12.3□□□□□ -0.44
LIG1-220ENST00000601091 CASTP20810 708 aaKnown RBP12.3□□□□□ -0.44
LIG1-220ENST00000601091 CCDC94Q9BW85 323 aaPredicted RBP12.3□□□□□ -0.44
LIG1-220ENST00000601091 ABCA9Q8IUA7 1624 aa12.3□□□□□ -0.44
LIG1-220ENST00000601091 GNL2Q13823 731 aaKnown RBP12.3□□□□□ -0.44
LIG1-220ENST00000601091 KIAA0232Q92628 1395 aa12.3□□□□□ -0.44
LIG1-220ENST00000601091 SF3A1Q15459 793 aaKnown RBP12.29□□□□□ -0.44
LIG1-220ENST00000601091 CT47A1Q5JQC4 288 aaPredicted RBP12.29□□□□□ -0.44
LIG1-220ENST00000601091 RHPN1Q8TCX5 695 aa12.29□□□□□ -0.44
LIG1-220ENST00000601091 RBM28Q9NW13 759 aaKnown RBP12.29□□□□□ -0.44
LIG1-220ENST00000601091 LIMCH1Q9UPQ0 1083 aa12.29□□□□□ -0.44
LIG1-220ENST00000601091 GLI2P10070 1586 aa12.29□□□□□ -0.44
LIG1-220ENST00000601091 INO80Q9ULG1 1556 aaPredicted RBP12.29□□□□□ -0.44
LIG1-220ENST00000601091 PI4KAP2A4QPH2 592 aa12.29□□□□□ -0.44
LIG1-220ENST00000601091 SIRT2Q8IXJ6 389 aa12.29□□□□□ -0.44
LIG1-220ENST00000601091 PI4KAP1Q8N8J0 262 aa12.29□□□□□ -0.44
LIG1-220ENST00000601091 JARID2Q92833 1246 aaPredicted RBP12.29□□□□□ -0.44
LIG1-220ENST00000601091 PHF8Q9UPP1 1060 aa12.29□□□□□ -0.44
LIG1-220ENST00000601091 ANKRD1Q15327 319 aa12.29□□□□□ -0.44
LIG1-220ENST00000601091 LARP1BQ659C4 914 aaKnown RBP12.29□□□□□ -0.44
LIG1-220ENST00000601091 GDPD2Q9HCC8 539 aa12.29□□□□□ -0.44
LIG1-220ENST00000601091 DBF4Q9UBU7 674 aaPredicted RBP12.29□□□□□ -0.44
LIG1-220ENST00000601091 ATP7BP35670 1465 aa12.29□□□□□ -0.44
LIG1-220ENST00000601091 BECN2A8MW95 431 aa12.28□□□□□ -0.44
LIG1-220ENST00000601091 SIL1Q9H173 461 aa12.28□□□□□ -0.44
LIG1-220ENST00000601091 QRICH2Q9H0J4 1663 aa12.28□□□□□ -0.44
LIG1-220ENST00000601091 SASS6Q6UVJ0 657 aa12.28□□□□□ -0.44
LIG1-220ENST00000601091 FAM135BQ49AJ0 1406 aa12.28□□□□□ -0.44
LIG1-220ENST00000601091 PLEKHG3A1L390 1219 aa12.28□□□□□ -0.44
LIG1-220ENST00000601091 LRRFIP1Q32MZ4 808 aaKnown RBP12.28□□□□□ -0.44
LIG1-220ENST00000601091 BLOC1S2Q6QNY1 142 aa12.28□□□□□ -0.44
LIG1-220ENST00000601091 PNPLA6Q8IY17 1366 aa12.28□□□□□ -0.44
LIG1-220ENST00000601091 PRIM1P49642 420 aaKnown RBP12.28□□□□□ -0.44
LIG1-220ENST00000601091 KRT85P78386 507 aa12.28□□□□□ -0.44
LIG1-220ENST00000601091 AMOTQ4VCS5 1084 aa12.28□□□□□ -0.44
LIG1-220ENST00000601091 GET4Q7L5D6 327 aaPredicted RBP12.28□□□□□ -0.44
LIG1-220ENST00000601091 ANKLE2Q86XL3 938 aa12.28□□□□□ -0.44
LIG1-220ENST00000601091 TSPYL1Q9H0U9 437 aa12.28□□□□□ -0.44
LIG1-220ENST00000601091 NRXN1Q9ULB1 1477 aa12.27□□□□□ -0.44
LIG1-220ENST00000601091 CHMLP26374 656 aa12.27□□□□□ -0.44
LIG1-220ENST00000601091 LRSAM1Q6UWE0 723 aa12.27□□□□□ -0.44
LIG1-220ENST00000601091 NEUROD6Q96NK8 337 aa12.27□□□□□ -0.44
LIG1-220ENST00000601091 PPRC1Q5VV67 1664 aaKnown RBP12.27□□□□□ -0.45
LIG1-220ENST00000601091 PRPF40BQ6NWY9 871 aaKnown RBP12.27□□□□□ -0.45
LIG1-220ENST00000601091 MPRIPQ6WCQ1 1025 aa12.27□□□□□ -0.45
LIG1-220ENST00000601091 SPG7Q9UQ90 795 aa12.27□□□□□ -0.45
LIG1-220ENST00000601091 RTL1A6NKG5 1358 aa12.27□□□□□ -0.45
LIG1-220ENST00000601091 LRCH2Q5VUJ6 765 aa12.27□□□□□ -0.45
LIG1-220ENST00000601091 ECHDC1Q9NTX5 307 aa12.27□□□□□ -0.45
LIG1-220ENST00000601091 TPM3P06753 285 aa12.26□□□□□ -0.45
LIG1-220ENST00000601091 CCDC192P0DO97 292 aa12.26□□□□□ -0.45
LIG1-220ENST00000601091 TPM4P67936 248 aa12.26□□□□□ -0.45
LIG1-220ENST00000601091 CCDC83Q8IWF9 413 aa12.26□□□□□ -0.45
LIG1-220ENST00000601091 SOS1Q07889 1333 aaPredicted RBP12.26□□□□□ -0.45
LIG1-220ENST00000601091 INTS4Q96HW7 963 aaKnown RBP12.26□□□□□ -0.45
LIG1-220ENST00000601091 SH2B1Q9NRF2 756 aaPredicted RBP12.26□□□□□ -0.45
LIG1-220ENST00000601091 PROCA1Q8NCQ7 364 aaPredicted RBP12.26□□□□□ -0.45
LIG1-220ENST00000601091 ACRBPQ8NEB7 543 aa12.26□□□□□ -0.45
LIG1-220ENST00000601091 TULP4Q9NRJ4 1543 aa12.26□□□□□ -0.45
LIG1-220ENST00000601091 CCDC183Q5T5S1 534 aa12.25□□□□□ -0.45
LIG1-220ENST00000601091 APBB1IPQ7Z5R6 666 aaPredicted RBP12.25□□□□□ -0.45
LIG1-220ENST00000601091 RBSNQ9H1K0 784 aa12.25□□□□□ -0.45
LIG1-220ENST00000601091 IQSEC2Q5JU85 1478 aa12.25□□□□□ -0.45
LIG1-220ENST00000601091 METP08581 1390 aa12.25□□□□□ -0.45
LIG1-220ENST00000601091 TPD52L2O43399 206 aaKnown RBP12.25□□□□□ -0.45
LIG1-220ENST00000601091 MYL6BP14649 208 aa12.25□□□□□ -0.45
LIG1-220ENST00000601091 CCDC181Q5TID7 509 aa12.25□□□□□ -0.45
LIG1-220ENST00000601091 LARP6Q9BRS8 491 aaKnown RBP12.25□□□□□ -0.45
LIG1-220ENST00000601091 MED14O60244 1454 aa12.24□□□□□ -0.45
LIG1-220ENST00000601091 STX6O43752 255 aa12.24□□□□□ -0.45
LIG1-220ENST00000601091 ANXA1P04083 346 aa12.24□□□□□ -0.45
LIG1-220ENST00000601091 TATP17735 454 aaPredicted RBP12.24□□□□□ -0.45
LIG1-220ENST00000601091 FOSBP53539 338 aa12.24□□□□□ -0.45
LIG1-220ENST00000601091 CCDC96Q2M329 555 aa12.24□□□□□ -0.45
LIG1-220ENST00000601091 PTCH1Q13635 1447 aa12.24□□□□□ -0.45
LIG1-220ENST00000601091 NEURL4Q96JN8 1562 aa12.24□□□□□ -0.45
LIG1-220ENST00000601091 SBNO1A3KN83 1393 aa12.24□□□□□ -0.45
LIG1-220ENST00000601091 GOLGA6CA6NDK9 693 aa12.24□□□□□ -0.45
LIG1-220ENST00000601091 GOLGA6BA6NDN3 693 aa12.24□□□□□ -0.45
LIG1-220ENST00000601091 GOLGA6DP0CG33 693 aa12.24□□□□□ -0.45
LIG1-220ENST00000601091 HMGN5P82970 282 aaKnown RBP12.24□□□□□ -0.45
LIG1-220ENST00000601091 FOXD4Q12950 439 aaPredicted RBP12.24□□□□□ -0.45
LIG1-220ENST00000601091 GOLGA6AQ9NYA3 693 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms