RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 MAP3K15Q6ZN16 1313 aa24.86■■□□□ 1.57
UPF1-209ENST00000600310 ERVV-1B6SEH8 477 aa24.86■■□□□ 1.57
UPF1-209ENST00000600310 TCERG1O14776 1098 aaKnown RBP24.86■■□□□ 1.57
UPF1-209ENST00000600310 POLD1P28340 1107 aa24.86■■□□□ 1.57
UPF1-209ENST00000600310 CLEC4GQ6UXB4 293 aa24.86■■□□□ 1.57
UPF1-209ENST00000600310 CT47B1P0C2W7 299 aaPredicted RBP24.85■■□□□ 1.57
UPF1-209ENST00000600310 AIMP1Q12904 312 aaKnown RBP24.85■■□□□ 1.57
UPF1-209ENST00000600310 COL24A1Q17RW2 1714 aa24.84■■□□□ 1.57
UPF1-209ENST00000600310 ZNF428Q96B54 188 aa24.84■■□□□ 1.57
UPF1-209ENST00000600310 ZNF652Q9Y2D9 606 aa24.84■■□□□ 1.57
UPF1-209ENST00000600310 SLC4A2P04920 1241 aa24.83■■□□□ 1.57
UPF1-209ENST00000600310 MMP10P09238 476 aa24.83■■□□□ 1.57
UPF1-209ENST00000600310 TM4SF1P30408 202 aa24.83■■□□□ 1.57
UPF1-209ENST00000600310 PHAXQ9H814 394 aaKnown RBP24.83■■□□□ 1.57
UPF1-209ENST00000600310 NFIXQ14938 502 aa24.82■■□□□ 1.56
UPF1-209ENST00000600310 HLFQ16534 295 aa24.82■■□□□ 1.56
UPF1-209ENST00000600310 ZBTB3Q9H5J0 574 aa24.82■■□□□ 1.56
UPF1-209ENST00000600310 SCN7AQ01118 1682 aa24.81■■□□□ 1.56
UPF1-209ENST00000600310 TBC1D9BQ66K14 1250 aa24.81■■□□□ 1.56
UPF1-209ENST00000600310 GIGYF2Q6Y7W6 1299 aaKnown RBP24.8■■□□□ 1.56
UPF1-209ENST00000600310 ANKRD13DQ6ZTN6 518 aa24.8■■□□□ 1.56
UPF1-209ENST00000600310 PLBD2Q8NHP8 589 aa24.8■■□□□ 1.56
UPF1-209ENST00000600310 DDR1Q08345 913 aa24.79■■□□□ 1.56
UPF1-209ENST00000600310 BCORQ6W2J9 1755 aa24.79■■□□□ 1.56
UPF1-209ENST00000600310 BICDL1Q6ZP65 573 aa24.78■■□□□ 1.56
UPF1-209ENST00000600310 G2E3Q7L622 706 aa24.78■■□□□ 1.56
UPF1-209ENST00000600310 PARP3Q9Y6F1 533 aa24.78■■□□□ 1.56
UPF1-209ENST00000600310 POLRMTO00411 1230 aaKnown RBP24.77■■□□□ 1.56
UPF1-209ENST00000600310 ALDH1L2Q3SY69 923 aa24.77■■□□□ 1.56
UPF1-209ENST00000600310 YTHDC1Q96MU7 727 aaKnown RBP24.77■■□□□ 1.56
UPF1-209ENST00000600310 DDX58O95786 925 aaKnown RBP24.76■■□□□ 1.55
UPF1-209ENST00000600310 FLIIQ13045 1269 aa24.76■■□□□ 1.55
UPF1-209ENST00000600310 SSH1Q8WYL5 1049 aa24.76■■□□□ 1.55
UPF1-209ENST00000600310 SETDB2Q96T68 719 aa24.76■■□□□ 1.55
UPF1-209ENST00000600310 PPP1R1BQ9UD71 204 aaPredicted RBP24.76■■□□□ 1.55
UPF1-209ENST00000600310 HSP90AB3PQ58FF7 597 aa24.75■■□□□ 1.55
UPF1-209ENST00000600310 MRPL50Q8N5N7 158 aaKnown RBP24.75■■□□□ 1.55
UPF1-209ENST00000600310 NIP7Q9Y221 180 aaKnown RBP eCLIP24.75■■□□□ 1.55
UPF1-209ENST00000600310 ATP10DQ9P241 1426 aa24.75■■□□□ 1.55
UPF1-209ENST00000600310 TCIRG1Q13488 830 aa24.74■■□□□ 1.55
UPF1-209ENST00000600310 RIC3Q7Z5B4 369 aa24.74■■□□□ 1.55
UPF1-209ENST00000600310 ZNF34Q8IZ26 560 aa24.74■■□□□ 1.55
UPF1-209ENST00000600310 CARMIL3Q8ND23 1372 aa24.73■■□□□ 1.55
UPF1-209ENST00000600310 SERPINB2P05120 415 aa24.73■■□□□ 1.55
UPF1-209ENST00000600310 KSR2Q6VAB6 950 aa24.73■■□□□ 1.55
UPF1-209ENST00000600310 RARSP54136 660 aaKnown RBP24.72■■□□□ 1.55
UPF1-209ENST00000600310 PI4KAP2A4QPH2 592 aa24.71■■□□□ 1.55
UPF1-209ENST00000600310 GPTP24298 496 aa24.71■■□□□ 1.55
UPF1-209ENST00000600310 FKBP5Q13451 457 aaPredicted RBP24.71■■□□□ 1.55
UPF1-209ENST00000600310 PI4KAP1Q8N8J0 262 aa24.71■■□□□ 1.55
UPF1-209ENST00000600310 BCL2L13Q9BXK5 485 aa24.71■■□□□ 1.55
UPF1-209ENST00000600310 SMC4Q9NTJ3 1288 aa24.71■■□□□ 1.55
UPF1-209ENST00000600310 BRPF1P55201 1214 aaPredicted RBP24.7■■□□□ 1.54
UPF1-209ENST00000600310 MAP3K2Q9Y2U5 619 aa24.7■■□□□ 1.54
UPF1-209ENST00000600310 CACNA1FO60840 1977 aa24.7■■□□□ 1.54
UPF1-209ENST00000600310 ADCY9O60503 1353 aa24.69■■□□□ 1.54
UPF1-209ENST00000600310 UBN2Q6ZU65 1347 aa24.69■■□□□ 1.54
UPF1-209ENST00000600310 PARP10Q53GL7 1025 aa24.69■■□□□ 1.54
UPF1-209ENST00000600310 ISCA1Q9BUE6 129 aa24.69■■□□□ 1.54
UPF1-209ENST00000600310 METTL22Q9BUU2 404 aaPredicted RBP24.69■■□□□ 1.54
UPF1-209ENST00000600310 NUP98P52948 1817 aa24.68■■□□□ 1.54
UPF1-209ENST00000600310 FHDC1Q9C0D6 1143 aaPredicted RBP24.68■■□□□ 1.54
UPF1-209ENST00000600310 CD2APQ9Y5K6 639 aa24.68■■□□□ 1.54
UPF1-209ENST00000600310 TRIM28Q13263 835 aaKnown RBP24.67■■□□□ 1.54
UPF1-209ENST00000600310 SUSD4Q5VX71 490 aa24.67■■□□□ 1.54
UPF1-209ENST00000600310 NLRP10Q86W26 655 aa24.67■■□□□ 1.54
UPF1-209ENST00000600310 NBPF5PQ86XG9 351 aaPredicted RBP24.67■■□□□ 1.54
UPF1-209ENST00000600310 PTPRCP08575 1304 aa24.66■■□□□ 1.54
UPF1-209ENST00000600310 PRR5LQ6MZQ0 368 aa24.66■■□□□ 1.54
UPF1-209ENST00000600310 TPTE2Q6XPS3 522 aa24.66■■□□□ 1.54
UPF1-209ENST00000600310 DNAAF4Q8WXU2 420 aa24.66■■□□□ 1.54
UPF1-209ENST00000600310 C10orf71Q711Q0 1435 aa24.66■■□□□ 1.54
UPF1-209ENST00000600310 IBTKQ9P2D0 1353 aaPredicted RBP24.66■■□□□ 1.54
UPF1-209ENST00000600310 ATP5J2-PTCD1G3V325 749 aa24.65■■□□□ 1.54
UPF1-209ENST00000600310 PPP1R42Q7Z4L9 355 aa24.65■■□□□ 1.54
UPF1-209ENST00000600310 KLHL34Q8N239 644 aa24.65■■□□□ 1.54
UPF1-209ENST00000600310 CNBD1Q8NA66 436 aa24.65■■□□□ 1.54
UPF1-209ENST00000600310 MYD88Q99836 296 aa24.65■■□□□ 1.54
UPF1-209ENST00000600310 NYXQ9GZU5 481 aa24.65■■□□□ 1.54
UPF1-209ENST00000600310 NRXN2Q9P2S2 1712 aa24.65■■□□□ 1.54
UPF1-209ENST00000600310 FAM177BA6PVY3 158 aa24.64■■□□□ 1.54
UPF1-209ENST00000600310 SYT17Q9BSW7 474 aa24.64■■□□□ 1.54
UPF1-209ENST00000600310 ARFGEF2Q9Y6D5 1785 aa24.63■■□□□ 1.53
UPF1-209ENST00000600310 F6X3S4 739 aa24.63■■□□□ 1.53
UPF1-209ENST00000600310 NPHP1O15259 732 aa24.63■■□□□ 1.53
UPF1-209ENST00000600310 NEXNQ0ZGT2 675 aa24.63■■□□□ 1.53
UPF1-209ENST00000600310 UTP14AQ9BVJ6 771 aaKnown RBP24.63■■□□□ 1.53
UPF1-209ENST00000600310 NTSR2O95665 410 aa24.62■■□□□ 1.53
UPF1-209ENST00000600310 ST5P78524 1137 aa24.62■■□□□ 1.53
UPF1-209ENST00000600310 NOB1Q9ULX3 412 aaKnown RBP24.62■■□□□ 1.53
UPF1-209ENST00000600310 BCAR3O75815 825 aa24.61■■□□□ 1.53
UPF1-209ENST00000600310 IGKV5-2P06315 115 aa24.61■■□□□ 1.53
UPF1-209ENST00000600310 CCDC191Q8NCU4 936 aa24.61■■□□□ 1.53
UPF1-209ENST00000600310 AFDNP55196 1824 aaKnown RBP24.61■■□□□ 1.53
UPF1-209ENST00000600310 RNF123Q5XPI4 1314 aa24.61■■□□□ 1.53
UPF1-209ENST00000600310 KIF16BQ96L93 1317 aa24.61■■□□□ 1.53
UPF1-209ENST00000600310 ANKRD36CQ5JPF3 1778 aa24.6■■□□□ 1.53
UPF1-209ENST00000600310 GTF2E1P29083 439 aaPredicted RBP24.6■■□□□ 1.53
UPF1-209ENST00000600310 TGFB2P61812 414 aa24.6■■□□□ 1.53
UPF1-209ENST00000600310 NUTM1Q86Y26 1132 aa24.6■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms