RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 SRP68Q9UHB9 627 aaKnown RBP21.22■□□□□ 0.99
SHKBP1-219ENST00000599575 HSP90AB3PQ58FF7 597 aa21.21■□□□□ 0.99
SHKBP1-219ENST00000599575 ANKRD13DQ6ZTN6 518 aa21.21■□□□□ 0.99
SHKBP1-219ENST00000599575 PLBD2Q8NHP8 589 aa21.21■□□□□ 0.99
SHKBP1-219ENST00000599575 BCL2L12Q9HB09 334 aa21.21■□□□□ 0.99
SHKBP1-219ENST00000599575 ANXA1P04083 346 aa21.2■□□□□ 0.98
SHKBP1-219ENST00000599575 PTGER2P43116 358 aa21.2■□□□□ 0.98
SHKBP1-219ENST00000599575 FKBP8Q14318 412 aa21.2■□□□□ 0.98
SHKBP1-219ENST00000599575 GIGYF2Q6Y7W6 1299 aaKnown RBP21.2■□□□□ 0.98
SHKBP1-219ENST00000599575 TTLL7Q6ZT98 887 aa21.2■□□□□ 0.98
SHKBP1-219ENST00000599575 ATF5Q9Y2D1 282 aaPredicted RBP21.2■□□□□ 0.98
SHKBP1-219ENST00000599575 COL24A1Q17RW2 1714 aa21.19■□□□□ 0.98
SHKBP1-219ENST00000599575 TM4SF1P30408 202 aa21.19■□□□□ 0.98
SHKBP1-219ENST00000599575 SCN7AQ01118 1682 aa21.18■□□□□ 0.98
SHKBP1-219ENST00000599575 BRPF1P55201 1214 aaPredicted RBP21.18■□□□□ 0.98
SHKBP1-219ENST00000599575 AIMP1Q12904 312 aaKnown RBP21.18■□□□□ 0.98
SHKBP1-219ENST00000599575 ATP10DQ9P241 1426 aa21.18■□□□□ 0.98
SHKBP1-219ENST00000599575 MMP10P09238 476 aa21.17■□□□□ 0.98
SHKBP1-219ENST00000599575 MSL1Q68DK7 614 aa21.17■□□□□ 0.98
SHKBP1-219ENST00000599575 SETDB2Q96T68 719 aa21.17■□□□□ 0.98
SHKBP1-219ENST00000599575 PARP3Q9Y6F1 533 aa21.17■□□□□ 0.98
SHKBP1-219ENST00000599575 LRP5O75197 1615 aa21.16■□□□□ 0.98
SHKBP1-219ENST00000599575 CARMIL3Q8ND23 1372 aa21.16■□□□□ 0.98
SHKBP1-219ENST00000599575 FLIIQ13045 1269 aa21.16■□□□□ 0.98
SHKBP1-219ENST00000599575 NFIXQ14938 502 aa21.16■□□□□ 0.98
SHKBP1-219ENST00000599575 ZBTB3Q9H5J0 574 aa21.16■□□□□ 0.98
SHKBP1-219ENST00000599575 PHAXQ9H814 394 aaKnown RBP21.16■□□□□ 0.98
SHKBP1-219ENST00000599575 PARP10Q53GL7 1025 aa21.15■□□□□ 0.98
SHKBP1-219ENST00000599575 KSR2Q6VAB6 950 aa21.15■□□□□ 0.98
SHKBP1-219ENST00000599575 RIC3Q7Z5B4 369 aa21.15■□□□□ 0.98
SHKBP1-219ENST00000599575 PTPRCP08575 1304 aa21.14■□□□□ 0.97
SHKBP1-219ENST00000599575 TRIM28Q13263 835 aaKnown RBP21.14■□□□□ 0.97
SHKBP1-219ENST00000599575 TCIRG1Q13488 830 aa21.14■□□□□ 0.97
SHKBP1-219ENST00000599575 HLFQ16534 295 aa21.14■□□□□ 0.97
SHKBP1-219ENST00000599575 TBC1D9BQ66K14 1250 aa21.14■□□□□ 0.97
SHKBP1-219ENST00000599575 SSH1Q8WYL5 1049 aa21.14■□□□□ 0.97
SHKBP1-219ENST00000599575 BCORQ6W2J9 1755 aa21.14■□□□□ 0.97
SHKBP1-219ENST00000599575 POLRMTO00411 1230 aaKnown RBP21.13■□□□□ 0.97
SHKBP1-219ENST00000599575 RARSP54136 660 aaKnown RBP21.13■□□□□ 0.97
SHKBP1-219ENST00000599575 ZNF34Q8IZ26 560 aa21.13■□□□□ 0.97
SHKBP1-219ENST00000599575 MRPL50Q8N5N7 158 aaKnown RBP21.13■□□□□ 0.97
SHKBP1-219ENST00000599575 NIP7Q9Y221 180 aaKnown RBP eCLIP21.13■□□□□ 0.97
SHKBP1-219ENST00000599575 CACNA1FO60840 1977 aa21.13■□□□□ 0.97
SHKBP1-219ENST00000599575 SRCAPQ6ZRS2 3230 aa21.13■□□□□ 0.97
SHKBP1-219ENST00000599575 IBTKQ9P2D0 1353 aaPredicted RBP21.12■□□□□ 0.97
SHKBP1-219ENST00000599575 RNF123Q5XPI4 1314 aa21.12■□□□□ 0.97
SHKBP1-219ENST00000599575 TCERG1O14776 1098 aaKnown RBP21.12■□□□□ 0.97
SHKBP1-219ENST00000599575 FKBP5Q13451 457 aaPredicted RBP21.12■□□□□ 0.97
SHKBP1-219ENST00000599575 NYXQ9GZU5 481 aa21.12■□□□□ 0.97
SHKBP1-219ENST00000599575 SMC4Q9NTJ3 1288 aa21.12■□□□□ 0.97
SHKBP1-219ENST00000599575 PPP1R1BQ9UD71 204 aaPredicted RBP21.12■□□□□ 0.97
SHKBP1-219ENST00000599575 KIF16BQ96L93 1317 aa21.11■□□□□ 0.97
SHKBP1-219ENST00000599575 PI4KAP2A4QPH2 592 aa21.11■□□□□ 0.97
SHKBP1-219ENST00000599575 DDR1Q08345 913 aa21.11■□□□□ 0.97
SHKBP1-219ENST00000599575 NEXNQ0ZGT2 675 aa21.11■□□□□ 0.97
SHKBP1-219ENST00000599575 TPTE2Q6XPS3 522 aa21.11■□□□□ 0.97
SHKBP1-219ENST00000599575 PI4KAP1Q8N8J0 262 aa21.11■□□□□ 0.97
SHKBP1-219ENST00000599575 YTHDC1Q96MU7 727 aaKnown RBP21.11■□□□□ 0.97
SHKBP1-219ENST00000599575 SERPINB2P05120 415 aa21.1■□□□□ 0.97
SHKBP1-219ENST00000599575 G2E3Q7L622 706 aa21.1■□□□□ 0.97
SHKBP1-219ENST00000599575 PPP1R42Q7Z4L9 355 aa21.1■□□□□ 0.97
SHKBP1-219ENST00000599575 METTL22Q9BUU2 404 aaPredicted RBP21.1■□□□□ 0.97
SHKBP1-219ENST00000599575 CD2APQ9Y5K6 639 aa21.1■□□□□ 0.97
SHKBP1-219ENST00000599575 BICDL1Q6ZP65 573 aa21.09■□□□□ 0.97
SHKBP1-219ENST00000599575 ARHGAP45Q92619 1136 aa21.09■□□□□ 0.97
SHKBP1-219ENST00000599575 MAP3K2Q9Y2U5 619 aa21.09■□□□□ 0.97
SHKBP1-219ENST00000599575 IPO8O15397 1037 aaKnown RBP21.08■□□□□ 0.97
SHKBP1-219ENST00000599575 NBPF5PQ86XG9 351 aaPredicted RBP21.08■□□□□ 0.97
SHKBP1-219ENST00000599575 DNAAF4Q8WXU2 420 aa21.08■□□□□ 0.97
SHKBP1-219ENST00000599575 ISCA1Q9BUE6 129 aa21.08■□□□□ 0.97
SHKBP1-219ENST00000599575 PDZRN3Q9UPQ7 1066 aa21.08■□□□□ 0.97
SHKBP1-219ENST00000599575 ADCY9O60503 1353 aa21.08■□□□□ 0.96
SHKBP1-219ENST00000599575 CNBD1Q8NA66 436 aa21.07■□□□□ 0.96
SHKBP1-219ENST00000599575 CCDC191Q8NCU4 936 aa21.07■□□□□ 0.96
SHKBP1-219ENST00000599575 NLRP10Q86W26 655 aa21.06■□□□□ 0.96
SHKBP1-219ENST00000599575 C10orf71Q711Q0 1435 aa21.05■□□□□ 0.96
SHKBP1-219ENST00000599575 NPHP1O15259 732 aa21.05■□□□□ 0.96
SHKBP1-219ENST00000599575 HSP90B1P14625 803 aaKnown RBP21.05■□□□□ 0.96
SHKBP1-219ENST00000599575 ST5P78524 1137 aa21.05■□□□□ 0.96
SHKBP1-219ENST00000599575 LINS1Q8NG48 757 aa21.05■□□□□ 0.96
SHKBP1-219ENST00000599575 UTP14AQ9BVJ6 771 aaKnown RBP21.05■□□□□ 0.96
SHKBP1-219ENST00000599575 API5Q9BZZ5 524 aaKnown RBP21.05■□□□□ 0.96
SHKBP1-219ENST00000599575 UBN2Q6ZU65 1347 aa21.04■□□□□ 0.96
SHKBP1-219ENST00000599575 GPTP24298 496 aa21.04■□□□□ 0.96
SHKBP1-219ENST00000599575 GTF2E1P29083 439 aaPredicted RBP21.04■□□□□ 0.96
SHKBP1-219ENST00000599575 TGFB2P61812 414 aa21.04■□□□□ 0.96
SHKBP1-219ENST00000599575 PRR5LQ6MZQ0 368 aa21.04■□□□□ 0.96
SHKBP1-219ENST00000599575 BRIP1Q9BX63 1249 aa21.04■□□□□ 0.96
SHKBP1-219ENST00000599575 BCL2L13Q9BXK5 485 aa21.04■□□□□ 0.96
SHKBP1-219ENST00000599575 NUP98P52948 1817 aa21.04■□□□□ 0.96
SHKBP1-219ENST00000599575 NRXN2Q9P2S2 1712 aa21.04■□□□□ 0.96
SHKBP1-219ENST00000599575 MYD88Q99836 296 aa21.03■□□□□ 0.96
SHKBP1-219ENST00000599575 CWC25Q9NXE8 425 aaPredicted RBP21.03■□□□□ 0.96
SHKBP1-219ENST00000599575 RIC1Q4ADV7 1423 aa21.03■□□□□ 0.96
SHKBP1-219ENST00000599575 NTSR2O95665 410 aa21.02■□□□□ 0.96
SHKBP1-219ENST00000599575 PDE6BP35913 854 aa21.02■□□□□ 0.96
SHKBP1-219ENST00000599575 SUSD4Q5VX71 490 aa21.02■□□□□ 0.96
SHKBP1-219ENST00000599575 FHDC1Q9C0D6 1143 aaPredicted RBP21.02■□□□□ 0.96
SHKBP1-219ENST00000599575 NOB1Q9ULX3 412 aaKnown RBP21.02■□□□□ 0.96
SHKBP1-219ENST00000599575 ALDH1L1O75891 902 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms