RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 DBF4Q9UBU7 674 aaPredicted RBP25.37■■□□□ 1.65
SHKBP1-214ENST00000597396 E9PSI1 815 aa25.36■■□□□ 1.65
SHKBP1-214ENST00000597396 EXOSC9Q06265 439 aaKnown RBP25.36■■□□□ 1.65
SHKBP1-214ENST00000597396 ZNF652Q9Y2D9 606 aa25.36■■□□□ 1.65
SHKBP1-214ENST00000597396 CCDC30Q5VVM6 783 aa25.35■■□□□ 1.65
SHKBP1-214ENST00000597396 BICDL1Q6ZP65 573 aa25.35■■□□□ 1.65
SHKBP1-214ENST00000597396 TTLL7Q6ZT98 887 aa25.35■■□□□ 1.65
SHKBP1-214ENST00000597396 NFIXQ14938 502 aa25.34■■□□□ 1.65
SHKBP1-214ENST00000597396 PELP1Q8IZL8 1130 aaKnown RBP25.34■■□□□ 1.65
SHKBP1-214ENST00000597396 MAP3K15Q6ZN16 1313 aa25.34■■□□□ 1.65
SHKBP1-214ENST00000597396 UTRNP46939 3433 aa25.33■■□□□ 1.65
SHKBP1-214ENST00000597396 TM4SF1P30408 202 aa25.33■■□□□ 1.65
SHKBP1-214ENST00000597396 AIMP1Q12904 312 aaKnown RBP25.33■■□□□ 1.65
SHKBP1-214ENST00000597396 TBC1D9BQ66K14 1250 aa25.33■■□□□ 1.65
SHKBP1-214ENST00000597396 CLEC4GQ6UXB4 293 aa25.33■■□□□ 1.65
SHKBP1-214ENST00000597396 LRP10Q7Z4F1 713 aa25.33■■□□□ 1.65
SHKBP1-214ENST00000597396 HYPKQ9NX55 129 aa25.33■■□□□ 1.65
SHKBP1-214ENST00000597396 DDR1Q08345 913 aa25.32■■□□□ 1.64
SHKBP1-214ENST00000597396 SLFN5Q08AF3 891 aa25.32■■□□□ 1.64
SHKBP1-214ENST00000597396 COPS6Q7L5N1 327 aa25.32■■□□□ 1.64
SHKBP1-214ENST00000597396 ZNF784Q8NCA9 323 aaPredicted RBP25.32■■□□□ 1.64
SHKBP1-214ENST00000597396 XAGE3Q8WTP9 111 aa25.32■■□□□ 1.64
SHKBP1-214ENST00000597396 ZBTB3Q9H5J0 574 aa25.32■■□□□ 1.64
SHKBP1-214ENST00000597396 ANKRD36CQ5JPF3 1778 aa25.31■■□□□ 1.64
SHKBP1-214ENST00000597396 KIF13BQ9NQT8 1826 aa25.31■■□□□ 1.64
SHKBP1-214ENST00000597396 ERVV-1B6SEH8 477 aa25.31■■□□□ 1.64
SHKBP1-214ENST00000597396 RGL2O15211 777 aa25.31■■□□□ 1.64
SHKBP1-214ENST00000597396 STK31Q9BXU1 1019 aa25.31■■□□□ 1.64
SHKBP1-214ENST00000597396 NRXN2Q9P2S2 1712 aa25.3■■□□□ 1.64
SHKBP1-214ENST00000597396 POLRMTO00411 1230 aaKnown RBP25.3■■□□□ 1.64
SHKBP1-214ENST00000597396 NLGN2Q8NFZ4 835 aa25.3■■□□□ 1.64
SHKBP1-214ENST00000597396 CDCA7LQ96GN5 454 aa25.3■■□□□ 1.64
SHKBP1-214ENST00000597396 HLFQ16534 295 aa25.29■■□□□ 1.64
SHKBP1-214ENST00000597396 SETDB2Q96T68 719 aa25.29■■□□□ 1.64
SHKBP1-214ENST00000597396 TCERG1O14776 1098 aaKnown RBP25.28■■□□□ 1.64
SHKBP1-214ENST00000597396 VAMP4O75379 141 aa25.28■■□□□ 1.64
SHKBP1-214ENST00000597396 SERPINB2P05120 415 aa25.28■■□□□ 1.64
SHKBP1-214ENST00000597396 CARMIL3Q8ND23 1372 aa25.28■■□□□ 1.64
SHKBP1-214ENST00000597396 ARFGEF2Q9Y6D5 1785 aa25.28■■□□□ 1.64
SHKBP1-214ENST00000597396 NIP7Q9Y221 180 aaKnown RBP eCLIP25.27■■□□□ 1.64
SHKBP1-214ENST00000597396 CD2APQ9Y5K6 639 aa25.27■■□□□ 1.64
SHKBP1-214ENST00000597396 C10orf71Q711Q0 1435 aa25.26■■□□□ 1.63
SHKBP1-214ENST00000597396 CHD4Q14839 1912 aa25.25■■□□□ 1.63
SHKBP1-214ENST00000597396 GIGYF2Q6Y7W6 1299 aaKnown RBP25.25■■□□□ 1.63
SHKBP1-214ENST00000597396 PHAXQ9H814 394 aaKnown RBP25.25■■□□□ 1.63
SHKBP1-214ENST00000597396 N4BP2Q86UW6 1770 aaPredicted RBP25.24■■□□□ 1.63
SHKBP1-214ENST00000597396 ATP10DQ9P241 1426 aa25.24■■□□□ 1.63
SHKBP1-214ENST00000597396 NPHP1O15259 732 aa25.24■■□□□ 1.63
SHKBP1-214ENST00000597396 ANKRD13DQ6ZTN6 518 aa25.23■■□□□ 1.63
SHKBP1-214ENST00000597396 PLBD2Q8NHP8 589 aa25.23■■□□□ 1.63
SHKBP1-214ENST00000597396 SLC4A2P04920 1241 aa25.22■■□□□ 1.63
SHKBP1-214ENST00000597396 GPTP24298 496 aa25.22■■□□□ 1.63
SHKBP1-214ENST00000597396 HSP90AB3PQ58FF7 597 aa25.22■■□□□ 1.63
SHKBP1-214ENST00000597396 TRMT2AQ8IZ69 625 aaKnown RBP25.22■■□□□ 1.63
SHKBP1-214ENST00000597396 KIAA1551Q9HCM1 1747 aa25.21■■□□□ 1.63
SHKBP1-214ENST00000597396 ZBED9Q6R2W3 1325 aa25.21■■□□□ 1.63
SHKBP1-214ENST00000597396 NBPF5PQ86XG9 351 aaPredicted RBP25.21■■□□□ 1.63
SHKBP1-214ENST00000597396 ANKRD31Q8N7Z5 1873 aa25.21■■□□□ 1.63
SHKBP1-214ENST00000597396 FAM177BA6PVY3 158 aa25.2■■□□□ 1.62
SHKBP1-214ENST00000597396 DDX58O95786 925 aaKnown RBP25.2■■□□□ 1.62
SHKBP1-214ENST00000597396 RIC3Q7Z5B4 369 aa25.2■■□□□ 1.62
SHKBP1-214ENST00000597396 CNBD1Q8NA66 436 aa25.2■■□□□ 1.62
SHKBP1-214ENST00000597396 PRR5LQ6MZQ0 368 aa25.19■■□□□ 1.62
SHKBP1-214ENST00000597396 YBX3P16989 372 aaKnown RBP eCLIP25.18■■□□□ 1.62
SHKBP1-214ENST00000597396 ST5P78524 1137 aa25.18■■□□□ 1.62
SHKBP1-214ENST00000597396 ZNF34Q8IZ26 560 aa25.18■■□□□ 1.62
SHKBP1-214ENST00000597396 GRIN3BO60391 1043 aa25.17■■□□□ 1.62
SHKBP1-214ENST00000597396 TGFB2P61812 414 aa25.17■■□□□ 1.62
SHKBP1-214ENST00000597396 TCIRG1Q13488 830 aa25.17■■□□□ 1.62
SHKBP1-214ENST00000597396 TPTE2Q6XPS3 522 aa25.17■■□□□ 1.62
SHKBP1-214ENST00000597396 G2E3Q7L622 706 aa25.17■■□□□ 1.62
SHKBP1-214ENST00000597396 NYXQ9GZU5 481 aa25.17■■□□□ 1.62
SHKBP1-214ENST00000597396 UBN2Q6ZU65 1347 aa25.16■■□□□ 1.62
SHKBP1-214ENST00000597396 PXDNLA1KZ92 1463 aa25.16■■□□□ 1.62
SHKBP1-214ENST00000597396 GTF2E1P29083 439 aaPredicted RBP25.16■■□□□ 1.62
SHKBP1-214ENST00000597396 PARP10Q53GL7 1025 aa25.16■■□□□ 1.62
SHKBP1-214ENST00000597396 CCDC24Q8N4L8 307 aa25.16■■□□□ 1.62
SHKBP1-214ENST00000597396 BRCA1P38398 1863 aaKnown RBP25.15■■□□□ 1.62
SHKBP1-214ENST00000597396 FLIIQ13045 1269 aa25.15■■□□□ 1.62
SHKBP1-214ENST00000597396 PPP1R42Q7Z4L9 355 aa25.15■■□□□ 1.62
SHKBP1-214ENST00000597396 DLEC1Q9Y238 1755 aa25.14■■□□□ 1.62
SHKBP1-214ENST00000597396 ZNF428Q96B54 188 aa25.14■■□□□ 1.62
SHKBP1-214ENST00000597396 IBTKQ9P2D0 1353 aaPredicted RBP25.14■■□□□ 1.61
SHKBP1-214ENST00000597396 CT47B1P0C2W7 299 aaPredicted RBP25.13■■□□□ 1.61
SHKBP1-214ENST00000597396 FKBP5Q13451 457 aaPredicted RBP25.13■■□□□ 1.61
SHKBP1-214ENST00000597396 SUSD4Q5VX71 490 aa25.13■■□□□ 1.61
SHKBP1-214ENST00000597396 KSR2Q6VAB6 950 aa25.13■■□□□ 1.61
SHKBP1-214ENST00000597396 MAP3K2Q9Y2U5 619 aa25.13■■□□□ 1.61
SHKBP1-214ENST00000597396 A0A0G2JLW4 131 aa25.12■■□□□ 1.61
SHKBP1-214ENST00000597396 PI4KAP2A4QPH2 592 aa25.12■■□□□ 1.61
SHKBP1-214ENST00000597396 DPEP1P16444 411 aa25.12■■□□□ 1.61
SHKBP1-214ENST00000597396 PI4KAP1Q8N8J0 262 aa25.12■■□□□ 1.61
SHKBP1-214ENST00000597396 BRIP1Q9BX63 1249 aa25.12■■□□□ 1.61
SHKBP1-214ENST00000597396 ATP5J2-PTCD1G3V325 749 aa25.11■■□□□ 1.61
SHKBP1-214ENST00000597396 PDE6BP35913 854 aa25.11■■□□□ 1.61
SHKBP1-214ENST00000597396 NLRP10Q86W26 655 aa25.11■■□□□ 1.61
SHKBP1-214ENST00000597396 NUTM1Q86Y26 1132 aa25.11■■□□□ 1.61
SHKBP1-214ENST00000597396 MYD88Q99836 296 aa25.11■■□□□ 1.61
SHKBP1-214ENST00000597396 UTP14AQ9BVJ6 771 aaKnown RBP25.11■■□□□ 1.61
SHKBP1-214ENST00000597396 COL11A2P13942 1736 aaPredicted RBP25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms