RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 CCDC61Q9Y6R9 512 aa14.34□□□□□ -0.11
LIG1-207ENST00000594759 MBD5Q9P267 1494 aa14.34□□□□□ -0.11
LIG1-207ENST00000594759 CYP2C19P33261 490 aa14.34□□□□□ -0.11
LIG1-207ENST00000594759 ST7Q9NRC1 585 aa14.34□□□□□ -0.11
LIG1-207ENST00000594759 GOLIM4O00461 696 aa14.34□□□□□ -0.11
LIG1-207ENST00000594759 ME1P48163 572 aa14.34□□□□□ -0.11
LIG1-207ENST00000594759 SARNPP82979 210 aaKnown RBP14.34□□□□□ -0.11
LIG1-207ENST00000594759 SART3Q15020 963 aaKnown RBP14.34□□□□□ -0.11
LIG1-207ENST00000594759 ESCO1Q5FWF5 840 aa14.34□□□□□ -0.11
LIG1-207ENST00000594759 THEMISQ8N1K5 641 aaPredicted RBP14.34□□□□□ -0.11
LIG1-207ENST00000594759 CARD14Q9BXL6 1004 aa14.34□□□□□ -0.11
LIG1-207ENST00000594759 CFAP45Q9UL16 551 aa14.34□□□□□ -0.11
LIG1-207ENST00000594759 GCC2Q8IWJ2 1684 aa14.34□□□□□ -0.11
LIG1-207ENST00000594759 ADGRL2O95490 1459 aa14.33□□□□□ -0.11
LIG1-207ENST00000594759 ABCC10Q5T3U5 1492 aa14.33□□□□□ -0.11
LIG1-207ENST00000594759 SHANK2Q9UPX8 1470 aa14.33□□□□□ -0.11
LIG1-207ENST00000594759 OTUD7AQ8TE49 926 aaPredicted RBP14.33□□□□□ -0.12
LIG1-207ENST00000594759 NRBP1Q9UHY1 535 aa14.33□□□□□ -0.12
LIG1-207ENST00000594759 CRACR2AQ9BSW2 395 aa14.33□□□□□ -0.12
LIG1-207ENST00000594759 CBX8Q9HC52 389 aa14.33□□□□□ -0.12
LIG1-207ENST00000594759 ARHGEF12Q9NZN5 1544 aa14.33□□□□□ -0.12
LIG1-207ENST00000594759 CCDC150Q8NCX0 1101 aa14.33□□□□□ -0.12
LIG1-207ENST00000594759 SYTL4Q96C24 671 aaPredicted RBP14.33□□□□□ -0.12
LIG1-207ENST00000594759 JAKMIP1Q96N16 626 aaKnown RBP14.33□□□□□ -0.12
LIG1-207ENST00000594759 CFAP100Q494V2 611 aa14.32□□□□□ -0.12
LIG1-207ENST00000594759 YY1AP1Q9H869 796 aa14.32□□□□□ -0.12
LIG1-207ENST00000594759 BCCIPQ9P287 314 aaKnown RBP eCLIP14.32□□□□□ -0.12
LIG1-207ENST00000594759 EMILIN1Q9Y6C2 1016 aa14.32□□□□□ -0.12
LIG1-207ENST00000594759 TRIM66O15016 1216 aa14.32□□□□□ -0.12
LIG1-207ENST00000594759 PSMA5P28066 241 aa14.32□□□□□ -0.12
LIG1-207ENST00000594759 LRCH2Q5VUJ6 765 aa14.32□□□□□ -0.12
LIG1-207ENST00000594759 NBPF11Q86T75 865 aa14.32□□□□□ -0.12
LIG1-207ENST00000594759 ERCC6L2Q5T890 1561 aa14.32□□□□□ -0.12
LIG1-207ENST00000594759 POLR3AO14802 1390 aaPredicted RBP14.32□□□□□ -0.12
LIG1-207ENST00000594759 EBAG9O00559 213 aa14.32□□□□□ -0.12
LIG1-207ENST00000594759 SYT1P21579 422 aa14.32□□□□□ -0.12
LIG1-207ENST00000594759 SSR1P43307 286 aaKnown RBP14.32□□□□□ -0.12
LIG1-207ENST00000594759 STK3Q13188 491 aa14.32□□□□□ -0.12
LIG1-207ENST00000594759 STX1AQ16623 288 aa14.32□□□□□ -0.12
LIG1-207ENST00000594759 DNAJC21Q5F1R6 531 aaKnown RBP14.32□□□□□ -0.12
LIG1-207ENST00000594759 CARD6Q9BX69 1037 aa14.32□□□□□ -0.12
LIG1-207ENST00000594759 OLFM4Q6UX06 510 aa14.31□□□□□ -0.12
LIG1-207ENST00000594759 CNTROBQ8N137 903 aa14.31□□□□□ -0.12
LIG1-207ENST00000594759 USP16Q9Y5T5 823 aa14.31□□□□□ -0.12
LIG1-207ENST00000594759 DTNBO60941 627 aa14.31□□□□□ -0.12
LIG1-207ENST00000594759 PNMA6AP0CW24 399 aaPredicted RBP14.31□□□□□ -0.12
LIG1-207ENST00000594759 ANAPC15P60006 121 aa14.31□□□□□ -0.12
LIG1-207ENST00000594759 TEFQ10587 303 aa14.31□□□□□ -0.12
LIG1-207ENST00000594759 ABCC11Q96J66 1382 aa14.31□□□□□ -0.12
LIG1-207ENST00000594759 ZBTB7BO15156 539 aaPredicted RBP14.31□□□□□ -0.12
LIG1-207ENST00000594759 RPAINQ86UA6 219 aa14.31□□□□□ -0.12
LIG1-207ENST00000594759 KIF2CQ99661 725 aa14.31□□□□□ -0.12
LIG1-207ENST00000594759 IL1RAPL2Q9NP60 686 aa14.31□□□□□ -0.12
LIG1-207ENST00000594759 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.31□□□□□ -0.124e-7■■□□□ 14.5
LIG1-207ENST00000594759 ZNF518AQ6AHZ1 1483 aa14.31□□□□□ -0.12
LIG1-207ENST00000594759 CTAGE5O15320 804 aa14.3□□□□□ -0.12
LIG1-207ENST00000594759 CBFA2T2O43439 604 aa14.3□□□□□ -0.12
LIG1-207ENST00000594759 DCTN1Q14203 1278 aa14.3□□□□□ -0.12
LIG1-207ENST00000594759 TSPYL4Q9UJ04 414 aa14.3□□□□□ -0.12
LIG1-207ENST00000594759 CEP83Q9Y592 693 aa14.3□□□□□ -0.12
LIG1-207ENST00000594759 GSPT1P15170 499 aaKnown RBP14.3□□□□□ -0.12
LIG1-207ENST00000594759 MKRN1Q9UHC7 482 aaKnown RBP14.3□□□□□ -0.12
LIG1-207ENST00000594759 POTEB2H3BUK9 544 aa14.3□□□□□ -0.12
LIG1-207ENST00000594759 CCDC172P0C7W6 258 aa14.3□□□□□ -0.12
LIG1-207ENST00000594759 ACTN2P35609 894 aa14.3□□□□□ -0.12
LIG1-207ENST00000594759 CLCN6P51797 869 aa14.3□□□□□ -0.12
LIG1-207ENST00000594759 TSR1Q2NL82 804 aaKnown RBP14.3□□□□□ -0.12
LIG1-207ENST00000594759 KIF4BQ2VIQ3 1234 aa14.3□□□□□ -0.12
LIG1-207ENST00000594759 ATAD2Q6PL18 1390 aa14.3□□□□□ -0.12
LIG1-207ENST00000594759 ABCA8O94911 1581 aa14.29□□□□□ -0.12
LIG1-207ENST00000594759 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.29□□□□□ -0.12
LIG1-207ENST00000594759 CWC27Q6UX04 472 aaKnown RBP14.29□□□□□ -0.12
LIG1-207ENST00000594759 TICAM2Q86XR7 235 aa14.29□□□□□ -0.12
LIG1-207ENST00000594759 CACTINQ8WUQ7 758 aaKnown RBP14.29□□□□□ -0.12
LIG1-207ENST00000594759 SH2B1Q9NRF2 756 aaPredicted RBP14.29□□□□□ -0.12
LIG1-207ENST00000594759 RBM28Q9NW13 759 aaKnown RBP14.29□□□□□ -0.12
LIG1-207ENST00000594759 SURF6O75683 361 aaKnown RBP14.29□□□□□ -0.12
LIG1-207ENST00000594759 CAGE1Q8TC20 777 aa14.29□□□□□ -0.12
LIG1-207ENST00000594759 GOLGA1Q92805 767 aa14.29□□□□□ -0.12
LIG1-207ENST00000594759 ERLIN2O94905 339 aa14.28□□□□□ -0.12
LIG1-207ENST00000594759 RNF187Q5TA31 235 aaPredicted RBP14.28□□□□□ -0.12
LIG1-207ENST00000594759 GNAI2P04899 355 aa14.28□□□□□ -0.12
LIG1-207ENST00000594759 FBXO18Q8NFZ0 1043 aa14.28□□□□□ -0.12
LIG1-207ENST00000594759 CCDC12Q8WUD4 166 aaPredicted RBP14.28□□□□□ -0.12
LIG1-207ENST00000594759 ZNF396Q96N95 335 aaPredicted RBP14.28□□□□□ -0.12
LIG1-207ENST00000594759 ESYT1Q9BSJ8 1104 aa14.28□□□□□ -0.12
LIG1-207ENST00000594759 DCTPP1Q9H773 170 aa14.28□□□□□ -0.12
LIG1-207ENST00000594759 RAD50Q92878 1312 aa14.28□□□□□ -0.12
LIG1-207ENST00000594759 SLC4A2P04920 1241 aa14.28□□□□□ -0.12
LIG1-207ENST00000594759 MAGEA9P43362 315 aa14.28□□□□□ -0.12
LIG1-207ENST00000594759 GYS2P54840 703 aa14.28□□□□□ -0.12
LIG1-207ENST00000594759 AKAP17AQ02040 695 aaKnown RBP14.28□□□□□ -0.12
LIG1-207ENST00000594759 ELP1O95163 1332 aa14.28□□□□□ -0.12
LIG1-207ENST00000594759 TOP1P11387 765 aaKnown RBP14.27□□□□□ -0.12
LIG1-207ENST00000594759 SYNE3Q6ZMZ3 975 aa14.27□□□□□ -0.12
LIG1-207ENST00000594759 HDXQ7Z353 690 aa14.27□□□□□ -0.12
LIG1-207ENST00000594759 LRRC8AQ8IWT6 810 aa14.27□□□□□ -0.12
LIG1-207ENST00000594759 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.27□□□□□ -0.12
LIG1-207ENST00000594759 NCKAP5LQ9HCH0 1330 aa14.27□□□□□ -0.12
LIG1-207ENST00000594759 NLRP1Q9C000 1473 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms