RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 CNKSR1Q969H4 720 aa31.78■■■□□ 2.68
LSM4-202ENST00000593564 NBPF26B4DH59 902 aa31.77■■■□□ 2.68
LSM4-202ENST00000593564 SRGNP10124 158 aa31.77■■■□□ 2.68
LSM4-202ENST00000593564 NBPF10Q6P3W6 841 aaKnown RBP31.77■■■□□ 2.68
LSM4-202ENST00000593564 NBPF15Q8N660 670 aa31.77■■■□□ 2.68
LSM4-202ENST00000593564 TIAM2Q8IVF5 1701 aa31.77■■■□□ 2.68
LSM4-202ENST00000593564 WDR90Q96KV7 1748 aa31.76■■■□□ 2.67
LSM4-202ENST00000593564 NEFMP07197 916 aa31.76■■■□□ 2.67
LSM4-202ENST00000593564 VEGFAP15692 232 aaPredicted RBP31.76■■■□□ 2.67
LSM4-202ENST00000593564 NBPF5PQ86XG9 351 aaPredicted RBP31.76■■■□□ 2.67
LSM4-202ENST00000593564 SMC1BQ8NDV3 1235 aa31.76■■■□□ 2.67
LSM4-202ENST00000593564 ZNF219Q9P2Y4 722 aaPredicted RBP31.76■■■□□ 2.67
LSM4-202ENST00000593564 MASTLQ96GX5 879 aa31.75■■■□□ 2.67
LSM4-202ENST00000593564 LTBP3Q9NS15 1303 aa31.75■■■□□ 2.67
LSM4-202ENST00000593564 PRPF40BQ6NWY9 871 aaKnown RBP31.73■■■□□ 2.67
LSM4-202ENST00000593564 PNISRQ8TF01 805 aaKnown RBP31.73■■■□□ 2.67
LSM4-202ENST00000593564 MIS18AQ9NYP9 233 aa31.73■■■□□ 2.67
LSM4-202ENST00000593564 FER1L6Q2WGJ9 1857 aa31.73■■■□□ 2.67
LSM4-202ENST00000593564 CCDC88AQ3V6T2 1871 aa31.73■■■□□ 2.67
LSM4-202ENST00000593564 PLEKHF1Q96S99 279 aa31.72■■■□□ 2.67
LSM4-202ENST00000593564 TAOK3Q9H2K8 898 aa31.72■■■□□ 2.67
LSM4-202ENST00000593564 ERFEQ4G0M1 354 aa31.71■■■□□ 2.67
LSM4-202ENST00000593564 SOGA3Q5TF21 947 aa31.71■■■□□ 2.67
LSM4-202ENST00000593564 DPY19L2Q6NUT2 758 aa31.7■■■□□ 2.67
LSM4-202ENST00000593564 NIP7Q9Y221 180 aaKnown RBP eCLIP31.7■■■□□ 2.67
LSM4-202ENST00000593564 SLX4Q8IY92 1834 aa31.7■■■□□ 2.66
LSM4-202ENST00000593564 HTRA3P83110 453 aa31.69■■■□□ 2.66
LSM4-202ENST00000593564 TPTE2Q6XPS3 522 aa31.69■■■□□ 2.66
LSM4-202ENST00000593564 KLRG2A4D1S0 409 aaPredicted RBP31.68■■■□□ 2.66
LSM4-202ENST00000593564 NFE2L2Q16236 605 aa31.68■■■□□ 2.66
LSM4-202ENST00000593564 LAMB4A4D0S4 1761 aa31.68■■■□□ 2.66
LSM4-202ENST00000593564 ARFGEF2Q9Y6D5 1785 aa31.68■■■□□ 2.66
LSM4-202ENST00000593564 KLRG1Q96E93 195 aa31.67■■■□□ 2.66
LSM4-202ENST00000593564 DICER1Q9UPY3 1922 aaKnown RBP31.67■■■□□ 2.66
LSM4-202ENST00000593564 KDM3BQ7LBC6 1761 aa31.66■■■□□ 2.66
LSM4-202ENST00000593564 POTECB2RU33 542 aa31.66■■■□□ 2.66
LSM4-202ENST00000593564 NPR1P16066 1061 aa31.66■■■□□ 2.66
LSM4-202ENST00000593564 PNNQ9H307 717 aaKnown RBP31.66■■■□□ 2.66
LSM4-202ENST00000593564 DLG5Q8TDM6 1919 aa31.66■■■□□ 2.66
LSM4-202ENST00000593564 HLFQ16534 295 aa31.65■■■□□ 2.66
LSM4-202ENST00000593564 C7orf43Q8WVR3 580 aa31.65■■■□□ 2.66
LSM4-202ENST00000593564 EIF4A1P60842 406 aaKnown RBP31.64■■■□□ 2.66
LSM4-202ENST00000593564 CACNA1SQ13698 1873 aa31.62■■■□□ 2.65
LSM4-202ENST00000593564 CCDC93Q567U6 631 aa31.62■■■□□ 2.65
LSM4-202ENST00000593564 JMYQ8N9B5 988 aa31.62■■■□□ 2.65
LSM4-202ENST00000593564 THUMPD2Q9BTF0 503 aaKnown RBP31.62■■■□□ 2.65
LSM4-202ENST00000593564 MAPK8IP3Q9UPT6 1336 aa31.62■■■□□ 2.65
LSM4-202ENST00000593564 ERVV-1B6SEH8 477 aa31.61■■■□□ 2.65
LSM4-202ENST00000593564 FAM177BA6PVY3 158 aa31.6■■■□□ 2.65
LSM4-202ENST00000593564 MAP3K15Q6ZN16 1313 aa31.58■■■□□ 2.65
LSM4-202ENST00000593564 NGEFQ8N5V2 710 aa31.58■■■□□ 2.65
LSM4-202ENST00000593564 GTF2E1P29083 439 aaPredicted RBP31.57■■■□□ 2.64
LSM4-202ENST00000593564 NYXQ9GZU5 481 aa31.57■■■□□ 2.64
LSM4-202ENST00000593564 RRP7AQ9Y3A4 280 aaKnown RBP31.57■■■□□ 2.64
LSM4-202ENST00000593564 FKBP4Q02790 459 aaKnown RBP eCLIP31.56■■■□□ 2.64
LSM4-202ENST00000593564 KIF6Q6ZMV9 814 aa31.56■■■□□ 2.64
LSM4-202ENST00000593564 DDNO94850 711 aaPredicted RBP31.55■■■□□ 2.64
LSM4-202ENST00000593564 TTLL7Q6ZT98 887 aa31.55■■■□□ 2.64
LSM4-202ENST00000593564 ALDH1B1P30837 517 aa31.54■■■□□ 2.64
LSM4-202ENST00000593564 RALBP1Q15311 655 aa31.54■■■□□ 2.64
LSM4-202ENST00000593564 RTKN2Q8IZC4 609 aa31.54■■■□□ 2.64
LSM4-202ENST00000593564 ERBB4Q15303 1308 aa31.53■■■□□ 2.64
LSM4-202ENST00000593564 ABCC12Q96J65 1359 aa31.53■■■□□ 2.64
LSM4-202ENST00000593564 MYL6BP14649 208 aa31.52■■■□□ 2.64
LSM4-202ENST00000593564 CRY2Q49AN0 593 aa31.52■■■□□ 2.64
LSM4-202ENST00000593564 IBTKQ9P2D0 1353 aaPredicted RBP31.52■■■□□ 2.64
LSM4-202ENST00000593564 OLFM4Q6UX06 510 aa31.51■■■□□ 2.63
LSM4-202ENST00000593564 NUTM1Q86Y26 1132 aa31.51■■■□□ 2.63
LSM4-202ENST00000593564 TSPYL4Q9UJ04 414 aa31.51■■■□□ 2.63
LSM4-202ENST00000593564 NUP98P52948 1817 aa31.5■■■□□ 2.63
LSM4-202ENST00000593564 L3MBTL3Q96JM7 780 aaPredicted RBP31.5■■■□□ 2.63
LSM4-202ENST00000593564 ZNF277Q9NRM2 450 aaPredicted RBP31.5■■■□□ 2.63
LSM4-202ENST00000593564 RIC1Q4ADV7 1423 aa31.49■■■□□ 2.63
LSM4-202ENST00000593564 IQCA1LA6NCM1 817 aa31.49■■■□□ 2.63
LSM4-202ENST00000593564 RIPK4P57078 832 aa31.49■■■□□ 2.63
LSM4-202ENST00000593564 CHADLQ6NUI6 762 aa31.49■■■□□ 2.63
LSM4-202ENST00000593564 ZBTB3Q9H5J0 574 aa31.49■■■□□ 2.63
LSM4-202ENST00000593564 UBN2Q6ZU65 1347 aa31.49■■■□□ 2.63
LSM4-202ENST00000593564 PCNTO95613 3336 aa31.48■■■□□ 2.63
LSM4-202ENST00000593564 GPTP24298 496 aa31.47■■■□□ 2.63
LSM4-202ENST00000593564 ZNF34Q8IZ26 560 aa31.47■■■□□ 2.63
LSM4-202ENST00000593564 BABAM1Q9NWV8 329 aa31.47■■■□□ 2.63
LSM4-202ENST00000593564 SNED1Q8TER0 1413 aa31.46■■■□□ 2.63
LSM4-202ENST00000593564 POTEIP0CG38 1075 aa31.45■■■□□ 2.63
LSM4-202ENST00000593564 POTEJP0CG39 1038 aa31.45■■■□□ 2.63
LSM4-202ENST00000593564 SUSD4Q5VX71 490 aa31.45■■■□□ 2.63
LSM4-202ENST00000593564 GIGYF2Q6Y7W6 1299 aaKnown RBP31.45■■■□□ 2.63
LSM4-202ENST00000593564 HOXA10P31260 410 aaPredicted RBP31.44■■■□□ 2.62
LSM4-202ENST00000593564 IARSP41252 1262 aaKnown RBP31.44■■■□□ 2.62
LSM4-202ENST00000593564 TMPOP42166 694 aaKnown RBP31.44■■■□□ 2.62
LSM4-202ENST00000593564 LMOD3Q0VAK6 560 aa31.44■■■□□ 2.62
LSM4-202ENST00000593564 LRP10Q7Z4F1 713 aa31.44■■■□□ 2.62
LSM4-202ENST00000593564 SYNE4Q8N205 404 aa31.44■■■□□ 2.62
LSM4-202ENST00000593564 PSMD1Q99460 953 aa31.44■■■□□ 2.62
LSM4-202ENST00000593564 ZNF541Q9H0D2 1346 aa31.44■■■□□ 2.62
LSM4-202ENST00000593564 CC2D2BQ6DHV5 1058 aa31.43■■■□□ 2.62
LSM4-202ENST00000593564 RPGRQ92834 1020 aaKnown RBP31.43■■■□□ 2.62
LSM4-202ENST00000593564 TAF1DQ9H5J8 278 aaPredicted RBP31.43■■■□□ 2.62
LSM4-202ENST00000593564 NTSR2O95665 410 aa31.42■■■□□ 2.62
LSM4-202ENST00000593564 PDIA6Q15084 440 aa31.42■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms