RNA–Protein interactions for RNA: ENST00000589788.1

SDF2-208, Transcript of stromal cell derived factor 2, humanhuman

TSL 2

Gene SDF2, Length 1,342 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-208ENST00000589788 IER5LQ5T953 404 aa13.67□□□□□ -0.22
SDF2-208ENST00000589788 RC3H1Q5TC82 1133 aaKnown RBP13.67□□□□□ -0.22
SDF2-208ENST00000589788 RTCBQ9Y3I0 505 aaKnown RBP13.67□□□□□ -0.22
SDF2-208ENST00000589788 CICQ96RK0 1608 aaPredicted RBP13.67□□□□□ -0.22
SDF2-208ENST00000589788 KCPQ6ZWJ8 1503 aa13.67□□□□□ -0.22
SDF2-208ENST00000589788 UBR2Q8IWV8 1755 aa13.67□□□□□ -0.22
SDF2-208ENST00000589788 TESPA1A2RU30 521 aaPredicted RBP13.66□□□□□ -0.22
SDF2-208ENST00000589788 DCTN1Q14203 1278 aa13.66□□□□□ -0.22
SDF2-208ENST00000589788 ZNF790Q6PG37 636 aa13.66□□□□□ -0.22
SDF2-208ENST00000589788 SMIM5Q71RC9 77 aa13.66□□□□□ -0.22
SDF2-208ENST00000589788 DNAJC10Q8IXB1 793 aa13.66□□□□□ -0.22
SDF2-208ENST00000589788 CRKLP46109 303 aaKnown RBP13.65□□□□□ -0.22
SDF2-208ENST00000589788 PPP1R15BQ5SWA1 713 aa13.65□□□□□ -0.22
SDF2-208ENST00000589788 TRAPPC3LQ5T215 181 aa13.65□□□□□ -0.22
SDF2-208ENST00000589788 MSL1Q68DK7 614 aa13.65□□□□□ -0.22
SDF2-208ENST00000589788 AMIGO3Q86WK7 504 aa13.65□□□□□ -0.22
SDF2-208ENST00000589788 CCDC146Q8IYE0 955 aa13.65□□□□□ -0.22
SDF2-208ENST00000589788 ARXQ96QS3 562 aa13.65□□□□□ -0.22
SDF2-208ENST00000589788 ADAMTS8Q9UP79 889 aa13.65□□□□□ -0.22
SDF2-208ENST00000589788 MYH14Q7Z406 1995 aaKnown RBP13.65□□□□□ -0.22
SDF2-208ENST00000589788 RPS6KA4O75676 772 aa13.64□□□□□ -0.23
SDF2-208ENST00000589788 GABBR2O75899 941 aa13.64□□□□□ -0.23
SDF2-208ENST00000589788 ZNF496Q96IT1 587 aaPredicted RBP13.64□□□□□ -0.23
SDF2-208ENST00000589788 FMNL2Q96PY5 1086 aa13.64□□□□□ -0.23
SDF2-208ENST00000589788 TMEM121BQ9BXQ6 578 aaPredicted RBP13.64□□□□□ -0.23
SDF2-208ENST00000589788 CCDC87Q9NVE4 849 aa13.64□□□□□ -0.23
SDF2-208ENST00000589788 COL24A1Q17RW2 1714 aa13.64□□□□□ -0.23
SDF2-208ENST00000589788 RIPK4P57078 832 aa13.64□□□□□ -0.23
SDF2-208ENST00000589788 LMOD3Q0VAK6 560 aa13.64□□□□□ -0.23
SDF2-208ENST00000589788 TAF7Q15545 349 aaPredicted RBP13.64□□□□□ -0.23
SDF2-208ENST00000589788 RUNDC1Q96C34 613 aa13.64□□□□□ -0.23
SDF2-208ENST00000589788 OCEL1Q9H607 264 aa13.64□□□□□ -0.23
SDF2-208ENST00000589788 STARD3NLO95772 234 aa13.63□□□□□ -0.23
SDF2-208ENST00000589788 CYP19A1P11511 503 aaPredicted RBP13.63□□□□□ -0.23
SDF2-208ENST00000589788 RFC4P35249 363 aa13.63□□□□□ -0.23
SDF2-208ENST00000589788 TMPOP42166 694 aaKnown RBP13.63□□□□□ -0.23
SDF2-208ENST00000589788 TEX13AQ9BXU3 409 aaPredicted RBP13.63□□□□□ -0.23
SDF2-208ENST00000589788 HEG1Q9ULI3 1381 aa13.63□□□□□ -0.23
SDF2-208ENST00000589788 KCNQ3O43525 872 aa13.62□□□□□ -0.23
SDF2-208ENST00000589788 NEUROD2Q15784 382 aa13.62□□□□□ -0.23
SDF2-208ENST00000589788 DIEXFQ68CQ4 756 aaKnown RBP13.62□□□□□ -0.23
SDF2-208ENST00000589788 INTS5Q6P9B9 1019 aaKnown RBP13.62□□□□□ -0.23
SDF2-208ENST00000589788 PNISRQ8TF01 805 aaKnown RBP13.62□□□□□ -0.23
SDF2-208ENST00000589788 THUMPD2Q9BTF0 503 aaKnown RBP13.62□□□□□ -0.23
SDF2-208ENST00000589788 FHDC1Q9C0D6 1143 aaPredicted RBP13.62□□□□□ -0.23
SDF2-208ENST00000589788 RRP7AQ9Y3A4 280 aaKnown RBP13.61□□□□□ -0.23
SDF2-208ENST00000589788 SRCAPQ6ZRS2 3230 aa13.6□□□□□ -0.23
SDF2-208ENST00000589788 C4AP0C0L4 1744 aa13.6□□□□□ -0.23
SDF2-208ENST00000589788 DSG2Q14126 1118 aa13.6□□□□□ -0.23
SDF2-208ENST00000589788 PELP1Q8IZL8 1130 aaKnown RBP13.6□□□□□ -0.23
SDF2-208ENST00000589788 MRS2Q9HD23 443 aa13.6□□□□□ -0.23
SDF2-208ENST00000589788 MIS18AQ9NYP9 233 aa13.6□□□□□ -0.23
SDF2-208ENST00000589788 SOS1Q07889 1333 aaPredicted RBP13.59□□□□□ -0.23
SDF2-208ENST00000589788 SNRPA1P09661 255 aaKnown RBP13.59□□□□□ -0.23
SDF2-208ENST00000589788 CANXP27824 592 aaKnown RBP13.59□□□□□ -0.23
SDF2-208ENST00000589788 CCDC184Q52MB2 194 aa13.59□□□□□ -0.23
SDF2-208ENST00000589788 NLGN1Q8N2Q7 840 aa13.59□□□□□ -0.23
SDF2-208ENST00000589788 SYT17Q9BSW7 474 aa13.59□□□□□ -0.23
SDF2-208ENST00000589788 ZBTB1Q9Y2K1 713 aa13.59□□□□□ -0.23
SDF2-208ENST00000589788 BOLA1Q9Y3E2 137 aa13.59□□□□□ -0.23
SDF2-208ENST00000589788 ZPR1O75312 459 aa13.58□□□□□ -0.24
SDF2-208ENST00000589788 NPM2Q86SE8 214 aaKnown RBP13.58□□□□□ -0.24
SDF2-208ENST00000589788 KDM3BQ7LBC6 1761 aa13.58□□□□□ -0.24
SDF2-208ENST00000589788 COL15A1P39059 1388 aa13.57□□□□□ -0.24
SDF2-208ENST00000589788 EMILIN3Q9NT22 766 aa13.57□□□□□ -0.24
SDF2-208ENST00000589788 TSPYL4Q9UJ04 414 aa13.57□□□□□ -0.24
SDF2-208ENST00000589788 ZNF330Q9Y3S2 320 aaPredicted RBP13.57□□□□□ -0.24
SDF2-208ENST00000589788 USP42Q9H9J4 1324 aaKnown RBP13.57□□□□□ -0.24
SDF2-208ENST00000589788 APAF1O14727 1248 aa13.56□□□□□ -0.24
SDF2-208ENST00000589788 KIF3CO14782 793 aa13.56□□□□□ -0.24
SDF2-208ENST00000589788 MMP10P09238 476 aa13.56□□□□□ -0.24
SDF2-208ENST00000589788 GYS1P13807 737 aa13.56□□□□□ -0.24
SDF2-208ENST00000589788 SRP68Q9UHB9 627 aaKnown RBP13.56□□□□□ -0.24
SDF2-208ENST00000589788 A0A087WZG4 1122 aa13.55□□□□□ -0.24
SDF2-208ENST00000589788 PRAMEF22A3QJZ6 481 aa13.55□□□□□ -0.24
SDF2-208ENST00000589788 A1BGP04217 495 aa13.55□□□□□ -0.24
SDF2-208ENST00000589788 PLCG2P16885 1265 aa13.55□□□□□ -0.24
SDF2-208ENST00000589788 FOXK1P85037 733 aa13.55□□□□□ -0.24
SDF2-208ENST00000589788 USP16Q9Y5T5 823 aa13.55□□□□□ -0.24
SDF2-208ENST00000589788 IL6STP40189 918 aaPredicted RBP13.54□□□□□ -0.24
SDF2-208ENST00000589788 EIF5P55010 431 aaKnown RBP13.54□□□□□ -0.24
SDF2-208ENST00000589788 EIF4A1P60842 406 aaKnown RBP13.54□□□□□ -0.24
SDF2-208ENST00000589788 USPL1Q5W0Q7 1092 aa13.54□□□□□ -0.24
SDF2-208ENST00000589788 BABAM1Q9NWV8 329 aa13.54□□□□□ -0.24
SDF2-208ENST00000589788 NARFQ9UHQ1 456 aa13.54□□□□□ -0.24
SDF2-208ENST00000589788 COLQQ9Y215 455 aaPredicted RBP13.54□□□□□ -0.24
SDF2-208ENST00000589788 LAS1LQ9Y4W2 734 aaKnown RBP13.54□□□□□ -0.24
SDF2-208ENST00000589788 CD2APQ9Y5K6 639 aa13.54□□□□□ -0.24
SDF2-208ENST00000589788 PARP3Q9Y6F1 533 aa13.54□□□□□ -0.24
SDF2-208ENST00000589788 LAMB4A4D0S4 1761 aa13.53□□□□□ -0.24
SDF2-208ENST00000589788 C2orf72A6NCS6 295 aa13.52□□□□□ -0.25
SDF2-208ENST00000589788 TULP1O00294 542 aaPredicted RBP13.52□□□□□ -0.25
SDF2-208ENST00000589788 GIGYF1O75420 1035 aaPredicted RBP13.52□□□□□ -0.25
SDF2-208ENST00000589788 NLGN2Q8NFZ4 835 aa13.52□□□□□ -0.25
SDF2-208ENST00000589788 TMC2Q8TDI7 906 aa13.52□□□□□ -0.25
SDF2-208ENST00000589788 POTEFA5A3E0 1075 aa13.51□□□□□ -0.25
SDF2-208ENST00000589788 PIP4K2AP48426 406 aaPredicted RBP13.51□□□□□ -0.25
SDF2-208ENST00000589788 CALD1Q05682 793 aaKnown RBP13.51□□□□□ -0.25
SDF2-208ENST00000589788 TBC1D2BQ9UPU7 963 aa13.51□□□□□ -0.25
SDF2-208ENST00000589788 CHL1O00533 1208 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms