RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 ATP10DQ9P241 1426 aa28.04■■■□□ 2.08
ATG4D-209ENST00000588857 ARFGEF2Q9Y6D5 1785 aa28.03■■■□□ 2.08
ATG4D-209ENST00000588857 RREB1Q92766 1687 aa28.02■■■□□ 2.08
ATG4D-209ENST00000588857 BEND3Q5T5X7 828 aa28.02■■■□□ 2.08
ATG4D-209ENST00000588857 LY75O60449 1722 aa28.01■■■□□ 2.08
ATG4D-209ENST00000588857 COL5A3P25940 1745 aaPredicted RBP28.01■■■□□ 2.08
ATG4D-209ENST00000588857 NEXNQ0ZGT2 675 aa28.01■■■□□ 2.07
ATG4D-209ENST00000588857 ITPK1Q13572 414 aa28.01■■■□□ 2.07
ATG4D-209ENST00000588857 PLBD2Q8NHP8 589 aa28.01■■■□□ 2.07
ATG4D-209ENST00000588857 ZNF330Q9Y3S2 320 aaPredicted RBP28.01■■■□□ 2.07
ATG4D-209ENST00000588857 MEIS3Q99687 375 aa28■■■□□ 2.07
ATG4D-209ENST00000588857 RGPD3A6NKT7 1758 aaPredicted RBP28■■■□□ 2.07
ATG4D-209ENST00000588857 RGPD4Q7Z3J3 1758 aa28■■■□□ 2.07
ATG4D-209ENST00000588857 RWDD1Q9H446 243 aaPredicted RBP27.99■■■□□ 2.07
ATG4D-209ENST00000588857 CCDC87Q9NVE4 849 aa27.99■■■□□ 2.07
ATG4D-209ENST00000588857 ALDH1L1O75891 902 aa27.99■■■□□ 2.07
ATG4D-209ENST00000588857 GNAI3P08754 354 aa27.99■■■□□ 2.07
ATG4D-209ENST00000588857 CENPQQ7L2Z9 268 aaPredicted RBP27.99■■■□□ 2.07
ATG4D-209ENST00000588857 NPM2Q86SE8 214 aaKnown RBP27.99■■■□□ 2.07
ATG4D-209ENST00000588857 ZBTB1Q9Y2K1 713 aa27.99■■■□□ 2.07
ATG4D-209ENST00000588857 NUP188Q5SRE5 1749 aa27.98■■■□□ 2.07
ATG4D-209ENST00000588857 CRKLP46109 303 aaKnown RBP27.98■■■□□ 2.07
ATG4D-209ENST00000588857 TTLL7Q6ZT98 887 aa27.98■■■□□ 2.07
ATG4D-209ENST00000588857 LINS1Q8NG48 757 aa27.98■■■□□ 2.07
ATG4D-209ENST00000588857 METTL22Q9BUU2 404 aaPredicted RBP27.98■■■□□ 2.07
ATG4D-209ENST00000588857 C1orf115Q9H7X2 142 aa27.98■■■□□ 2.07
ATG4D-209ENST00000588857 KIF6Q6ZMV9 814 aa27.97■■■□□ 2.07
ATG4D-209ENST00000588857 AFDNP55196 1824 aaKnown RBP27.97■■■□□ 2.07
ATG4D-209ENST00000588857 MYH14Q7Z406 1995 aaKnown RBP27.96■■■□□ 2.07
ATG4D-209ENST00000588857 IL6STP40189 918 aaPredicted RBP27.96■■■□□ 2.07
ATG4D-209ENST00000588857 ANO8Q9HCE9 1232 aaPredicted RBP27.96■■■□□ 2.07
ATG4D-209ENST00000588857 KDM2BQ8NHM5 1336 aa27.96■■■□□ 2.07
ATG4D-209ENST00000588857 IGHDP01880 384 aa27.95■■■□□ 2.07
ATG4D-209ENST00000588857 INTS5Q6P9B9 1019 aaKnown RBP27.95■■■□□ 2.07
ATG4D-209ENST00000588857 CCNL1Q9UK58 526 aaPredicted RBP27.95■■■□□ 2.07
ATG4D-209ENST00000588857 MYD88Q99836 296 aa27.94■■■□□ 2.06
ATG4D-209ENST00000588857 USP44Q9H0E7 712 aa27.94■■■□□ 2.06
ATG4D-209ENST00000588857 ARXQ96QS3 562 aa27.94■■■□□ 2.06
ATG4D-209ENST00000588857 ZBTB3Q9H5J0 574 aa27.94■■■□□ 2.06
ATG4D-209ENST00000588857 GNAI2P04899 355 aa27.93■■■□□ 2.06
ATG4D-209ENST00000588857 HDAC1Q13547 482 aaPredicted RBP27.93■■■□□ 2.06
ATG4D-209ENST00000588857 CWF19L2Q2TBE0 894 aaKnown RBP27.93■■■□□ 2.06
ATG4D-209ENST00000588857 TAF1LQ8IZX4 1826 aa27.93■■■□□ 2.06
ATG4D-209ENST00000588857 UBTFL1P0CB47 393 aaPredicted RBP27.92■■■□□ 2.06
ATG4D-209ENST00000588857 SLC27A3Q5K4L6 730 aa27.92■■■□□ 2.06
ATG4D-209ENST00000588857 LINC00116Q8NCU8 138 aa27.92■■■□□ 2.06
ATG4D-209ENST00000588857 LRRC4BQ9NT99 713 aa27.92■■■□□ 2.06
ATG4D-209ENST00000588857 C9orf78Q9NZ63 289 aaPredicted RBP27.92■■■□□ 2.06
ATG4D-209ENST00000588857 KCNQ4P56696 695 aa27.91■■■□□ 2.06
ATG4D-209ENST00000588857 IGKV5-2P06315 115 aa27.9■■■□□ 2.06
ATG4D-209ENST00000588857 NEURL1BA8MQ27 555 aa27.9■■■□□ 2.06
ATG4D-209ENST00000588857 EIF5P55010 431 aaKnown RBP27.9■■■□□ 2.06
ATG4D-209ENST00000588857 SLC15A2Q16348 729 aa27.9■■■□□ 2.06
ATG4D-209ENST00000588857 RPAP2Q8IXW5 612 aaPredicted RBP27.9■■■□□ 2.06
ATG4D-209ENST00000588857 PELP1Q8IZL8 1130 aaKnown RBP27.9■■■□□ 2.06
ATG4D-209ENST00000588857 STK32BQ9NY57 414 aa27.9■■■□□ 2.06
ATG4D-209ENST00000588857 CNTNAP4Q9C0A0 1308 aa27.9■■■□□ 2.06
ATG4D-209ENST00000588857 IBTKQ9P2D0 1353 aaPredicted RBP27.89■■■□□ 2.06
ATG4D-209ENST00000588857 HDAC5Q9UQL6 1122 aa27.89■■■□□ 2.05
ATG4D-209ENST00000588857 MAP3K15Q6ZN16 1313 aa27.89■■■□□ 2.05
ATG4D-209ENST00000588857 RC3H1Q5TC82 1133 aaKnown RBP27.87■■■□□ 2.05
ATG4D-209ENST00000588857 DZIP3Q86Y13 1208 aaKnown RBP27.87■■■□□ 2.05
ATG4D-209ENST00000588857 NUP98P52948 1817 aa27.87■■■□□ 2.05
ATG4D-209ENST00000588857 ATP5J2-PTCD1G3V325 749 aa27.86■■■□□ 2.05
ATG4D-209ENST00000588857 GRM8O00222 908 aa27.86■■■□□ 2.05
ATG4D-209ENST00000588857 NBPF7P0C2Y1 421 aaPredicted RBP27.86■■■□□ 2.05
ATG4D-209ENST00000588857 GCKRQ14397 625 aa27.86■■■□□ 2.05
ATG4D-209ENST00000588857 ANKRD44Q8N8A2 993 aa27.86■■■□□ 2.05
ATG4D-209ENST00000588857 LRRFIP2Q9Y608 721 aaKnown RBP27.86■■■□□ 2.05
ATG4D-209ENST00000588857 CEP85Q6P2H3 762 aa27.86■■■□□ 2.05
ATG4D-209ENST00000588857 TBC1D2BQ9UPU7 963 aa27.85■■■□□ 2.05
ATG4D-209ENST00000588857 ANKRD36CQ5JPF3 1778 aa27.84■■■□□ 2.05
ATG4D-209ENST00000588857 ERVV-1B6SEH8 477 aa27.84■■■□□ 2.05
ATG4D-209ENST00000588857 TCIRG1Q13488 830 aa27.84■■■□□ 2.05
ATG4D-209ENST00000588857 SIRT2Q8IXJ6 389 aa27.84■■■□□ 2.05
ATG4D-209ENST00000588857 UTYO14607 1347 aa27.83■■■□□ 2.05
ATG4D-209ENST00000588857 A0A087WZG4 1122 aa27.83■■■□□ 2.05
ATG4D-209ENST00000588857 HSP90AB3PQ58FF7 597 aa27.83■■■□□ 2.05
ATG4D-209ENST00000588857 GIGYF2Q6Y7W6 1299 aaKnown RBP27.83■■■□□ 2.05
ATG4D-209ENST00000588857 C4BP0C0L5 1744 aa27.83■■■□□ 2.05
ATG4D-209ENST00000588857 COL15A1P39059 1388 aa27.83■■■□□ 2.05
ATG4D-209ENST00000588857 HMMRO75330 724 aa27.82■■■□□ 2.04
ATG4D-209ENST00000588857 CWC25Q9NXE8 425 aaPredicted RBP27.82■■■□□ 2.04
ATG4D-209ENST00000588857 CCDC191Q8NCU4 936 aa27.82■■■□□ 2.04
ATG4D-209ENST00000588857 HMGB2P26583 209 aaKnown RBP27.81■■■□□ 2.04
ATG4D-209ENST00000588857 HLFQ16534 295 aa27.8■■■□□ 2.04
ATG4D-209ENST00000588857 ZNF827Q17R98 1081 aa27.8■■■□□ 2.04
ATG4D-209ENST00000588857 AKT1S1Q96B36 256 aa27.8■■■□□ 2.04
ATG4D-209ENST00000588857 ISCA1Q9BUE6 129 aa27.8■■■□□ 2.04
ATG4D-209ENST00000588857 PDGFDQ9GZP0 370 aaPredicted RBP27.8■■■□□ 2.04
ATG4D-209ENST00000588857 GNPATO15228 680 aa27.79■■■□□ 2.04
ATG4D-209ENST00000588857 RPS6KA4O75676 772 aa27.79■■■□□ 2.04
ATG4D-209ENST00000588857 ATP8B2P98198 1209 aa27.78■■■□□ 2.04
ATG4D-209ENST00000588857 TRIM28Q13263 835 aaKnown RBP27.78■■■□□ 2.04
ATG4D-209ENST00000588857 GCC1Q96CN9 775 aa27.78■■■□□ 2.04
ATG4D-209ENST00000588857 SMC5Q8IY18 1101 aa27.77■■■□□ 2.04
ATG4D-209ENST00000588857 AK7Q96M32 723 aa27.77■■■□□ 2.04
ATG4D-209ENST00000588857 RTCBQ9Y3I0 505 aaKnown RBP27.77■■■□□ 2.04
ATG4D-209ENST00000588857 UBE3BQ7Z3V4 1068 aa27.77■■■□□ 2.04
ATG4D-209ENST00000588857 BCORQ6W2J9 1755 aa27.77■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms