RNA–Protein interactions for RNA: ENST00000582594.5

PPP4R1-222, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 1 (best)

Gene PPP4R1, Length 2,982 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-222	ENST00000582594	OS9	Q13438	667 aa	Predicted RBP	11.41	□□□□□ -0.58
PPP4R1-222	ENST00000582594	TTC6	Q86TZ1	520 aa		11.41	□□□□□ -0.58
PPP4R1-222	ENST00000582594	SSH3	Q8TE77	659 aa		11.41	□□□□□ -0.58
PPP4R1-222	ENST00000582594	AOX1	Q06278	1338 aa		11.41	□□□□□ -0.58
PPP4R1-222	ENST00000582594	EIF2S2	P20042	333 aa	Known RBP	11.41	□□□□□ -0.58
PPP4R1-222	ENST00000582594	COL9A3	Q14050	684 aa	Predicted RBP	11.41	□□□□□ -0.58
PPP4R1-222	ENST00000582594	ME3	Q16798	604 aa		11.41	□□□□□ -0.58
PPP4R1-222	ENST00000582594	TCEANC2	Q96MN5	208 aa		11.41	□□□□□ -0.58
PPP4R1-222	ENST00000582594	MRVI1	Q9Y6F6	885 aa		11.41	□□□□□ -0.58
PPP4R1-222	ENST00000582594	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.4	□□□□□ -0.58
PPP4R1-222	ENST00000582594	NBPF7	P0C2Y1	421 aa	Predicted RBP	11.4	□□□□□ -0.58
PPP4R1-222	ENST00000582594	TYRO3	Q06418	890 aa		11.4	□□□□□ -0.58
PPP4R1-222	ENST00000582594	EYA1	Q99502	592 aa		11.4	□□□□□ -0.58
PPP4R1-222	ENST00000582594	NUP62CL	Q9H1M0	184 aa		11.4	□□□□□ -0.58
PPP4R1-222	ENST00000582594	TFIP11	Q9UBB9	837 aa	Known RBP	11.4	□□□□□ -0.58
PPP4R1-222	ENST00000582594	SETD1A	O15047	1707 aa	Known RBP	11.4	□□□□□ -0.58
PPP4R1-222	ENST00000582594	XRN1	Q8IZH2	1706 aa	Known RBP	11.4	□□□□□ -0.58
PPP4R1-222	ENST00000582594	AKAP12	Q02952	1782 aa		11.4	□□□□□ -0.58
PPP4R1-222	ENST00000582594	MAP3K11	Q16584	847 aa		11.4	□□□□□ -0.58
PPP4R1-222	ENST00000582594	CDC37L1	Q7L3B6	337 aa		11.4	□□□□□ -0.58
PPP4R1-222	ENST00000582594	ANKRD7	Q92527	254 aa		11.4	□□□□□ -0.58
PPP4R1-222	ENST00000582594	GTPBP4	Q9BZE4	634 aa	Known RBP	11.4	□□□□□ -0.58
PPP4R1-222	ENST00000582594	ANO6	Q4KMQ2	910 aa		11.4	□□□□□ -0.59
PPP4R1-222	ENST00000582594	LARP1B	Q659C4	914 aa	Known RBP	11.4	□□□□□ -0.59
PPP4R1-222	ENST00000582594	FAM200A	Q8TCP9	573 aa		11.4	□□□□□ -0.59
PPP4R1-222	ENST00000582594	RAB11FIP3	O75154	756 aa		11.39	□□□□□ -0.59
PPP4R1-222	ENST00000582594	TPM3	P06753	285 aa		11.39	□□□□□ -0.59
PPP4R1-222	ENST00000582594	AMPH	P49418	695 aa		11.39	□□□□□ -0.59
PPP4R1-222	ENST00000582594	HDGFL1	Q5TGJ6	251 aa		11.39	□□□□□ -0.59
PPP4R1-222	ENST00000582594	KIF1BP	Q96EK5	621 aa		11.39	□□□□□ -0.59
PPP4R1-222	ENST00000582594	CYP46A1	Q9Y6A2	500 aa		11.39	□□□□□ -0.59
PPP4R1-222	ENST00000582594	KCNJ4	P48050	445 aa		11.39	□□□□□ -0.59
PPP4R1-222	ENST00000582594	NCBP1	Q09161	790 aa	Known RBP	11.39	□□□□□ -0.59
PPP4R1-222	ENST00000582594	LTV1	Q96GA3	475 aa	Predicted RBP	11.39	□□□□□ -0.59
PPP4R1-222	ENST00000582594	TRIM5	Q9C035	493 aa		11.39	□□□□□ -0.59
PPP4R1-222	ENST00000582594	CBX8	Q9HC52	389 aa		11.39	□□□□□ -0.59
PPP4R1-222	ENST00000582594	DACT1	Q9NYF0	836 aa		11.39	□□□□□ -0.59
PPP4R1-222	ENST00000582594	ANXA1	P04083	346 aa		11.38	□□□□□ -0.59
PPP4R1-222	ENST00000582594	ZNF592	Q92610	1267 aa		11.38	□□□□□ -0.59
PPP4R1-222	ENST00000582594	TNMD	Q9H2S6	317 aa		11.38	□□□□□ -0.59
PPP4R1-222	ENST00000582594	TPCN1	Q9ULQ1	816 aa		11.38	□□□□□ -0.59
PPP4R1-222	ENST00000582594	ARHGEF10	O15013	1369 aa		11.38	□□□□□ -0.59
PPP4R1-222	ENST00000582594	CTIF	O43310	598 aa	Known RBP	11.38	□□□□□ -0.59
PPP4R1-222	ENST00000582594	KRT85	P78386	507 aa		11.38	□□□□□ -0.59
PPP4R1-222	ENST00000582594	OVOS2	A0A0J9YW53	1432 aa		11.38	□□□□□ -0.59
PPP4R1-222	ENST00000582594	OVOS2	Q6IE36	1432 aa		11.38	□□□□□ -0.59
PPP4R1-222	ENST00000582594	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	11.38	□□□□□ -0.59
PPP4R1-222	ENST00000582594	FAM208A	Q9UK61	1670 aa	Known RBP	11.38	□□□□□ -0.59
PPP4R1-222	ENST00000582594	GOLGA6L4	A6NEF3	574 aa		11.37	□□□□□ -0.59
PPP4R1-222	ENST00000582594	EPB41L2	O43491	1005 aa	Known RBP	11.37	□□□□□ -0.59
PPP4R1-222	ENST00000582594	TNNT1	P13805	278 aa		11.37	□□□□□ -0.59
PPP4R1-222	ENST00000582594	STK3	Q13188	491 aa		11.37	□□□□□ -0.59
PPP4R1-222	ENST00000582594	POLA2	Q14181	598 aa		11.37	□□□□□ -0.59
PPP4R1-222	ENST00000582594	VPS53	Q5VIR6	699 aa		11.37	□□□□□ -0.59
PPP4R1-222	ENST00000582594	RGPD1	P0DJD0	1748 aa		11.37	□□□□□ -0.59
PPP4R1-222	ENST00000582594	GNAT3	A8MTJ3	354 aa		11.37	□□□□□ -0.59
PPP4R1-222	ENST00000582594	NUTM2G	Q5VZR2	741 aa		11.37	□□□□□ -0.59
PPP4R1-222	ENST00000582594	IL17RE	Q8NFR9	667 aa		11.37	□□□□□ -0.59
PPP4R1-222	ENST00000582594	TAF7	Q15545	349 aa	Predicted RBP	11.37	□□□□□ -0.59
PPP4R1-222	ENST00000582594	ZSCAN31	Q96LW9	406 aa	Predicted RBP	11.37	□□□□□ -0.59
PPP4R1-222	ENST00000582594	ZSWIM6	Q9HCJ5	1215 aa		11.37	□□□□□ -0.59
PPP4R1-222	ENST00000582594	TRH	P20396	242 aa	Predicted RBP	11.36	□□□□□ -0.59
PPP4R1-222	ENST00000582594	TPD52L1	Q16890	204 aa	Predicted RBP	11.36	□□□□□ -0.59
PPP4R1-222	ENST00000582594	ZNF771	Q7L3S4	317 aa	Predicted RBP	11.36	□□□□□ -0.59
PPP4R1-222	ENST00000582594	DNAJC25	Q9H1X3	360 aa		11.36	□□□□□ -0.59
PPP4R1-222	ENST00000582594	PA2G4	Q9UQ80	394 aa	Known RBP	11.36	□□□□□ -0.59
PPP4R1-222	ENST00000582594	NRXN3	Q9Y4C0	1643 aa		11.36	□□□□□ -0.59
PPP4R1-222	ENST00000582594	ZNF75D	P51815	510 aa		11.36	□□□□□ -0.59
PPP4R1-222	ENST00000582594	ZSCAN25	Q6NSZ9	544 aa		11.36	□□□□□ -0.59
PPP4R1-222	ENST00000582594	USHBP1	Q8N6Y0	703 aa		11.36	□□□□□ -0.59
PPP4R1-222	ENST00000582594	SPATA32	Q96LK8	384 aa		11.36	□□□□□ -0.59
PPP4R1-222	ENST00000582594	FAM227B	Q96M60	508 aa		11.36	□□□□□ -0.59
PPP4R1-222	ENST00000582594	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.36	□□□□□ -0.59
PPP4R1-222	ENST00000582594	RBM8A	Q9Y5S9	174 aa	Known RBP	11.36	□□□□□ -0.59
PPP4R1-222	ENST00000582594	ROBO2	Q9HCK4	1378 aa		11.35	□□□□□ -0.59
PPP4R1-222	ENST00000582594	RUFY2	Q8WXA3	655 aa		11.35	□□□□□ -0.59
PPP4R1-222	ENST00000582594	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	11.35	□□□□□ -0.59
PPP4R1-222	ENST00000582594		V9GYY5	206 aa	Predicted RBP	11.35	□□□□□ -0.59
PPP4R1-222	ENST00000582594	GLRX3	O76003	335 aa	Known RBP	11.35	□□□□□ -0.59
PPP4R1-222	ENST00000582594	CCDC144B	Q3MJ40	725 aa		11.35	□□□□□ -0.59
PPP4R1-222	ENST00000582594	CREB3L3	Q68CJ9	461 aa		11.35	□□□□□ -0.59
PPP4R1-222	ENST00000582594	LARP1	Q6PKG0	1096 aa	Known RBP	11.35	□□□□□ -0.59
PPP4R1-222	ENST00000582594	CCDC144CP	Q8IYA2	1237 aa		11.35	□□□□□ -0.59
PPP4R1-222	ENST00000582594	BICD2	Q8TD16	824 aa		11.35	□□□□□ -0.59
PPP4R1-222	ENST00000582594	TAF6L	Q9Y6J9	622 aa		11.35	□□□□□ -0.59
PPP4R1-222	ENST00000582594	PI4KAP2	A4QPH2	592 aa		11.34	□□□□□ -0.59
PPP4R1-222	ENST00000582594	SMTNL1	A8MU46	457 aa		11.34	□□□□□ -0.59
PPP4R1-222	ENST00000582594	NR1I2	O75469	434 aa		11.34	□□□□□ -0.59
PPP4R1-222	ENST00000582594	KIF20A	O95235	890 aa		11.34	□□□□□ -0.59
PPP4R1-222	ENST00000582594	ZKSCAN1	P17029	563 aa	Predicted RBP	11.34	□□□□□ -0.59
PPP4R1-222	ENST00000582594	ARID5B	Q14865	1188 aa		11.34	□□□□□ -0.59
PPP4R1-222	ENST00000582594	PI4KAP1	Q8N8J0	262 aa		11.34	□□□□□ -0.59
PPP4R1-222	ENST00000582594	CACTIN	Q8WUQ7	758 aa	Known RBP	11.34	□□□□□ -0.59
PPP4R1-222	ENST00000582594	CLIP2	Q9UDT6	1046 aa		11.34	□□□□□ -0.59
PPP4R1-222	ENST00000582594	USP6	P35125	1406 aa		11.34	□□□□□ -0.59
PPP4R1-222	ENST00000582594	CHPF2	Q9P2E5	772 aa		11.34	□□□□□ -0.59
PPP4R1-222	ENST00000582594	CCDC171	Q6TFL3	1326 aa		11.34	□□□□□ -0.59
PPP4R1-222	ENST00000582594		A0A087WWV3	80 aa		11.34	□□□□□ -0.59
PPP4R1-222	ENST00000582594	IFIT2	P09913	472 aa	Known RBP	11.34	□□□□□ -0.59
PPP4R1-222	ENST00000582594	FOSB	P53539	338 aa		11.34	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms