RNA–Protein interactions for RNA: ENST00000566612.5

CDH1-210, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 4,138 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-210ENST00000566612 VPS37DQ86XT2 251 aa13.76□□□□□ -0.21
CDH1-210ENST00000566612 SPATA32Q96LK8 384 aa13.76□□□□□ -0.21
CDH1-210ENST00000566612 USP6P35125 1406 aa13.76□□□□□ -0.21
CDH1-210ENST00000566612 TPM4P67936 248 aa13.76□□□□□ -0.21
CDH1-210ENST00000566612 TRIM5Q9C035 493 aa13.76□□□□□ -0.21
CDH1-210ENST00000566612 BICC1Q9H694 974 aaKnown RBP13.76□□□□□ -0.21
CDH1-210ENST00000566612 ARHGEF10O15013 1369 aa13.76□□□□□ -0.21
CDH1-210ENST00000566612 KAT6BQ8WYB5 2073 aa13.76□□□□□ -0.21
CDH1-210ENST00000566612 TULP1O00294 542 aaPredicted RBP13.76□□□□□ -0.21
CDH1-210ENST00000566612 GPTP24298 496 aa13.76□□□□□ -0.21
CDH1-210ENST00000566612 TRIM29Q14134 588 aa13.76□□□□□ -0.21
CDH1-210ENST00000566612 CHMP4CQ96CF2 233 aa13.76□□□□□ -0.21
CDH1-210ENST00000566612 RBM8AQ9Y5S9 174 aaKnown RBP13.76□□□□□ -0.21
CDH1-210ENST00000566612 IFIT1P09914 478 aaKnown RBP13.75□□□□□ -0.21
CDH1-210ENST00000566612 RRP12Q5JTH9 1297 aaKnown RBP13.75□□□□□ -0.21
CDH1-210ENST00000566612 LMBR1LQ6UX01 489 aa13.75□□□□□ -0.21
CDH1-210ENST00000566612 LRRC2Q9BYS8 371 aa13.75□□□□□ -0.21
CDH1-210ENST00000566612 ATP2B1P20020 1258 aa13.75□□□□□ -0.21
CDH1-210ENST00000566612 ANAPC15P60006 121 aa13.75□□□□□ -0.21
CDH1-210ENST00000566612 PRIM1P49642 420 aaKnown RBP13.75□□□□□ -0.21
CDH1-210ENST00000566612 AK2P54819 239 aa13.75□□□□□ -0.21
CDH1-210ENST00000566612 ZSCAN30Q86W11 494 aa13.75□□□□□ -0.21
CDH1-210ENST00000566612 TNMDQ9H2S6 317 aa13.75□□□□□ -0.21
CDH1-210ENST00000566612 LETM1O95202 739 aaPredicted RBP13.75□□□□□ -0.21
CDH1-210ENST00000566612 GUCY1B3Q02153 619 aa13.75□□□□□ -0.21
CDH1-210ENST00000566612 C19orf44Q9H6X5 657 aa13.75□□□□□ -0.21
CDH1-210ENST00000566612 PALD1Q9ULE6 856 aa13.75□□□□□ -0.21
CDH1-210ENST00000566612 CNPY2Q9Y2B0 182 aa13.74□□□□□ -0.21
CDH1-210ENST00000566612 HSPA2P54652 639 aa13.74□□□□□ -0.21
CDH1-210ENST00000566612 AKAP17AQ02040 695 aaKnown RBP13.74□□□□□ -0.21
CDH1-210ENST00000566612 KRT32Q14532 448 aa13.74□□□□□ -0.21
CDH1-210ENST00000566612 TMOD3Q9NYL9 352 aa13.74□□□□□ -0.21
CDH1-210ENST00000566612 IGSF1Q8N6C5 1336 aa13.74□□□□□ -0.21
CDH1-210ENST00000566612 IDH1O75874 414 aaKnown RBP13.74□□□□□ -0.21
CDH1-210ENST00000566612 CCDC192P0DO97 292 aa13.74□□□□□ -0.21
CDH1-210ENST00000566612 ME1P48163 572 aa13.74□□□□□ -0.21
CDH1-210ENST00000566612 CCT2P78371 535 aaKnown RBP13.74□□□□□ -0.21
CDH1-210ENST00000566612 NMIQ13287 307 aaPredicted RBP13.74□□□□□ -0.21
CDH1-210ENST00000566612 USP48Q86UV5 1035 aa13.74□□□□□ -0.21
CDH1-210ENST00000566612 UNC5CLQ8IV45 518 aa13.74□□□□□ -0.21
CDH1-210ENST00000566612 SH2B1Q9NRF2 756 aaPredicted RBP13.74□□□□□ -0.21
CDH1-210ENST00000566612 PTPRMP28827 1452 aa13.73□□□□□ -0.21
CDH1-210ENST00000566612 RBM10P98175 930 aaKnown RBP13.73□□□□□ -0.21
CDH1-210ENST00000566612 DDX21Q9NR30 783 aaKnown RBP eCLIP13.73□□□□□ -0.21
CDH1-210ENST00000566612 TBC1D2BQ9UPU7 963 aa13.73□□□□□ -0.21
CDH1-210ENST00000566612 KINO60870 393 aaKnown RBP13.73□□□□□ -0.21
CDH1-210ENST00000566612 ZNF790Q6PG37 636 aa13.73□□□□□ -0.21
CDH1-210ENST00000566612 CADPS2Q86UW7 1296 aa13.73□□□□□ -0.21
CDH1-210ENST00000566612 PLEKHG1Q9ULL1 1385 aa13.73□□□□□ -0.21
CDH1-210ENST00000566612 USP25Q9UHP3 1055 aa13.73□□□□□ -0.21
CDH1-210ENST00000566612 CDK12Q9NYV4 1490 aaPredicted RBP13.73□□□□□ -0.21
CDH1-210ENST00000566612 METTL24Q5JXM2 366 aa13.72□□□□□ -0.21
CDH1-210ENST00000566612 NDUFB9Q9Y6M9 179 aa13.72□□□□□ -0.21
CDH1-210ENST00000566612 CKAP2LQ8IYA6 745 aa13.72□□□□□ -0.21
CDH1-210ENST00000566612 NEXMIFQ5QGS0 1516 aa13.72□□□□□ -0.21
CDH1-210ENST00000566612 ADGRB1O14514 1584 aa13.72□□□□□ -0.21
CDH1-210ENST00000566612 RASSF8Q8NHQ8 419 aa13.72□□□□□ -0.21
CDH1-210ENST00000566612 NUP62CLQ9H1M0 184 aa13.72□□□□□ -0.21
CDH1-210ENST00000566612 NUTM2BA6NNL0 878 aaPredicted RBP13.71□□□□□ -0.21
CDH1-210ENST00000566612 NUTM2EB1AL46 878 aaPredicted RBP13.71□□□□□ -0.21
CDH1-210ENST00000566612 NUTM2AQ8IVF1 878 aaPredicted RBP13.71□□□□□ -0.21
CDH1-210ENST00000566612 ARHGEF40Q8TER5 1519 aa13.71□□□□□ -0.21
CDH1-210ENST00000566612 NRXN1Q9ULB1 1477 aa13.71□□□□□ -0.21
CDH1-210ENST00000566612 KIF24Q5T7B8 1368 aa13.71□□□□□ -0.21
CDH1-210ENST00000566612 PRAMEF22A3QJZ6 481 aa13.71□□□□□ -0.21
CDH1-210ENST00000566612 ZSCAN22P10073 491 aaPredicted RBP13.71□□□□□ -0.21
CDH1-210ENST00000566612 HAND2P61296 217 aa13.71□□□□□ -0.21
CDH1-210ENST00000566612 STK38Q15208 465 aa13.71□□□□□ -0.21
CDH1-210ENST00000566612 SUCLG2Q96I99 432 aa13.71□□□□□ -0.21
CDH1-210ENST00000566612 CWC25Q9NXE8 425 aaPredicted RBP13.71□□□□□ -0.21
CDH1-210ENST00000566612 PROSER3Q2NL68 480 aa13.71□□□□□ -0.21
CDH1-210ENST00000566612 LRRC7Q96NW7 1537 aa13.71□□□□□ -0.22
CDH1-210ENST00000566612 STARD3NLO95772 234 aa13.71□□□□□ -0.22
CDH1-210ENST00000566612 CCDC183Q5T5S1 534 aa13.71□□□□□ -0.22
CDH1-210ENST00000566612 GIMAP6Q6P9H5 292 aa13.71□□□□□ -0.22
CDH1-210ENST00000566612 RAB11FIP4Q86YS3 637 aa13.71□□□□□ -0.22
CDH1-210ENST00000566612 SSH3Q8TE77 659 aa13.71□□□□□ -0.22
CDH1-210ENST00000566612 FAM227BQ96M60 508 aa13.71□□□□□ -0.22
CDH1-210ENST00000566612 DIP2CQ9Y2E4 1556 aa13.7□□□□□ -0.22
CDH1-210ENST00000566612 HCLS1P14317 486 aaPredicted RBP13.7□□□□□ -0.22
CDH1-210ENST00000566612 ZNF496Q96IT1 587 aaPredicted RBP13.7□□□□□ -0.22
CDH1-210ENST00000566612 MPHOSPH8Q99549 860 aa13.7□□□□□ -0.22
CDH1-210ENST00000566612 BABAM1Q9NWV8 329 aa13.7□□□□□ -0.22
CDH1-210ENST00000566612 SGSM2O43147 1006 aa13.7□□□□□ -0.22
CDH1-210ENST00000566612 DNM1Q05193 864 aaKnown RBP13.7□□□□□ -0.22
CDH1-210ENST00000566612 TFCP2Q12800 502 aa13.7□□□□□ -0.22
CDH1-210ENST00000566612 ZCRB1Q8TBF4 217 aaKnown RBP13.7□□□□□ -0.22
CDH1-210ENST00000566612 RRAGDQ9NQL2 400 aaPredicted RBP13.7□□□□□ -0.22
CDH1-210ENST00000566612 TTC41PQ6P2S7 1318 aa13.7□□□□□ -0.22
CDH1-210ENST00000566612 GIGYF1O75420 1035 aaPredicted RBP13.7□□□□□ -0.22
CDH1-210ENST00000566612 IFIT5Q13325 482 aaKnown RBP13.7□□□□□ -0.22
CDH1-210ENST00000566612 BRF1Q92994 677 aa13.7□□□□□ -0.22
CDH1-210ENST00000566612 CAMSAP1Q5T5Y3 1602 aa13.7□□□□□ -0.22
CDH1-210ENST00000566612 ERICH2A1L162 156 aa13.69□□□□□ -0.22
CDH1-210ENST00000566612 NEK1Q96PY6 1258 aa13.69□□□□□ -0.22
CDH1-210ENST00000566612 LRSAM1Q6UWE0 723 aa13.69□□□□□ -0.22
CDH1-210ENST00000566612 EDC3Q96F86 508 aaKnown RBP13.69□□□□□ -0.22
CDH1-210ENST00000566612 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.69□□□□□ -0.22
CDH1-210ENST00000566612 SNX14Q9Y5W7 946 aa13.69□□□□□ -0.22
CDH1-210ENST00000566612 U3KPZ7 1027 aaPredicted RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms