RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 TNRC6CQ9HCJ0 1690 aaKnown RBP24.77■■□□□ 1.56
CLN3-218ENST00000565688 MAPK8IP3Q9UPT6 1336 aa24.77■■□□□ 1.56
CLN3-218ENST00000565688 NFKBIEO00221 500 aa24.76■■□□□ 1.55
CLN3-218ENST00000565688 STYK1Q6J9G0 422 aa24.76■■□□□ 1.55
CLN3-218ENST00000565688 RRAGCQ9HB90 399 aa24.76■■□□□ 1.55
CLN3-218ENST00000565688 COL11A2P13942 1736 aaPredicted RBP24.75■■□□□ 1.55
CLN3-218ENST00000565688 SRGNP10124 158 aa24.75■■□□□ 1.55
CLN3-218ENST00000565688 FSTL1Q12841 308 aa24.75■■□□□ 1.55
CLN3-218ENST00000565688 RALBP1Q15311 655 aa24.75■■□□□ 1.55
CLN3-218ENST00000565688 DLG5Q8TDM6 1919 aa24.74■■□□□ 1.55
CLN3-218ENST00000565688 C21orf2O43822 256 aa24.74■■□□□ 1.55
CLN3-218ENST00000565688 PRELPP51888 382 aa24.74■■□□□ 1.55
CLN3-218ENST00000565688 MASTLQ96GX5 879 aa24.74■■□□□ 1.55
CLN3-218ENST00000565688 LAMB4A4D0S4 1761 aa24.73■■□□□ 1.55
CLN3-218ENST00000565688 GLTPD2A6NH11 291 aa24.73■■□□□ 1.55
CLN3-218ENST00000565688 SOGA3Q5TF21 947 aa24.73■■□□□ 1.55
CLN3-218ENST00000565688 TPTE2Q6XPS3 522 aa24.73■■□□□ 1.55
CLN3-218ENST00000565688 NIP7Q9Y221 180 aaKnown RBP eCLIP24.73■■□□□ 1.55
CLN3-218ENST00000565688 KDM3BQ7LBC6 1761 aa24.72■■□□□ 1.55
CLN3-218ENST00000565688 LTBP3Q9NS15 1303 aa24.71■■□□□ 1.55
CLN3-218ENST00000565688 EIF4A1P60842 406 aaKnown RBP24.71■■□□□ 1.55
CLN3-218ENST00000565688 PRPF40BQ6NWY9 871 aaKnown RBP24.71■■□□□ 1.55
CLN3-218ENST00000565688 ZNF219Q9P2Y4 722 aaPredicted RBP24.71■■□□□ 1.55
CLN3-218ENST00000565688 TIAM2Q8IVF5 1701 aa24.69■■□□□ 1.54
CLN3-218ENST00000565688 VEGFAP15692 232 aaPredicted RBP24.69■■□□□ 1.54
CLN3-218ENST00000565688 NPR1P16066 1061 aa24.69■■□□□ 1.54
CLN3-218ENST00000565688 THUMPD2Q9BTF0 503 aaKnown RBP24.69■■□□□ 1.54
CLN3-218ENST00000565688 TAOK3Q9H2K8 898 aa24.69■■□□□ 1.54
CLN3-218ENST00000565688 FER1L6Q2WGJ9 1857 aa24.68■■□□□ 1.54
CLN3-218ENST00000565688 KLRG2A4D1S0 409 aaPredicted RBP24.68■■□□□ 1.54
CLN3-218ENST00000565688 ERVV-1B6SEH8 477 aa24.68■■□□□ 1.54
CLN3-218ENST00000565688 ERFEQ4G0M1 354 aa24.68■■□□□ 1.54
CLN3-218ENST00000565688 DPY19L2Q6NUT2 758 aa24.68■■□□□ 1.54
CLN3-218ENST00000565688 CCDC88AQ3V6T2 1871 aa24.68■■□□□ 1.54
CLN3-218ENST00000565688 HLFQ16534 295 aa24.67■■□□□ 1.54
CLN3-218ENST00000565688 SMC1BQ8NDV3 1235 aa24.67■■□□□ 1.54
CLN3-218ENST00000565688 ARFGEF2Q9Y6D5 1785 aa24.67■■□□□ 1.54
CLN3-218ENST00000565688 SLX4Q8IY92 1834 aa24.65■■□□□ 1.54
CLN3-218ENST00000565688 GTF2E1P29083 439 aaPredicted RBP24.65■■□□□ 1.54
CLN3-218ENST00000565688 KIF6Q6ZMV9 814 aa24.65■■□□□ 1.54
CLN3-218ENST00000565688 DNAJC5GQ8N7S2 189 aa24.65■■□□□ 1.54
CLN3-218ENST00000565688 NYXQ9GZU5 481 aa24.65■■□□□ 1.54
CLN3-218ENST00000565688 RRP7AQ9Y3A4 280 aaKnown RBP24.65■■□□□ 1.54
CLN3-218ENST00000565688 ERBB4Q15303 1308 aa24.64■■□□□ 1.54
CLN3-218ENST00000565688 MAP3K15Q6ZN16 1313 aa24.64■■□□□ 1.54
CLN3-218ENST00000565688 RIPK4P57078 832 aa24.64■■□□□ 1.54
CLN3-218ENST00000565688 LMOD3Q0VAK6 560 aa24.64■■□□□ 1.54
CLN3-218ENST00000565688 NGEFQ8N5V2 710 aa24.64■■□□□ 1.54
CLN3-218ENST00000565688 TSPYL4Q9UJ04 414 aa24.64■■□□□ 1.54
CLN3-218ENST00000565688 DICER1Q9UPY3 1922 aaKnown RBP24.63■■□□□ 1.53
CLN3-218ENST00000565688 FAM177BA6PVY3 158 aa24.63■■□□□ 1.53
CLN3-218ENST00000565688 CCDC93Q567U6 631 aa24.63■■□□□ 1.53
CLN3-218ENST00000565688 C7orf43Q8WVR3 580 aa24.63■■□□□ 1.53
CLN3-218ENST00000565688 BABAM1Q9NWV8 329 aa24.63■■□□□ 1.53
CLN3-218ENST00000565688 WDR90Q96KV7 1748 aa24.62■■□□□ 1.53
CLN3-218ENST00000565688 DDX10Q13206 875 aaKnown RBP24.62■■□□□ 1.53
CLN3-218ENST00000565688 CACNA1SQ13698 1873 aa24.62■■□□□ 1.53
CLN3-218ENST00000565688 MYBBP1AQ9BQG0 1328 aaKnown RBP24.61■■□□□ 1.53
CLN3-218ENST00000565688 MYL6BP14649 208 aa24.61■■□□□ 1.53
CLN3-218ENST00000565688 ALDH1B1P30837 517 aa24.61■■□□□ 1.53
CLN3-218ENST00000565688 TMPOP42166 694 aaKnown RBP24.6■■□□□ 1.53
CLN3-218ENST00000565688 TTLL7Q6ZT98 887 aa24.6■■□□□ 1.53
CLN3-218ENST00000565688 IBTKQ9P2D0 1353 aaPredicted RBP24.58■■□□□ 1.53
CLN3-218ENST00000565688 RTKN2Q8IZC4 609 aa24.58■■□□□ 1.53
CLN3-218ENST00000565688 NUP98P52948 1817 aa24.58■■□□□ 1.53
CLN3-218ENST00000565688 POTECB2RU33 542 aa24.57■■□□□ 1.52
CLN3-218ENST00000565688 FKBP4Q02790 459 aaKnown RBP eCLIP24.57■■□□□ 1.52
CLN3-218ENST00000565688 CRY2Q49AN0 593 aa24.57■■□□□ 1.52
CLN3-218ENST00000565688 ZBTB3Q9H5J0 574 aa24.57■■□□□ 1.52
CLN3-218ENST00000565688 RIC1Q4ADV7 1423 aa24.55■■□□□ 1.52
CLN3-218ENST00000565688 GPTP24298 496 aa24.55■■□□□ 1.52
CLN3-218ENST00000565688 GIGYF2Q6Y7W6 1299 aaKnown RBP24.55■■□□□ 1.52
CLN3-218ENST00000565688 NUTM1Q86Y26 1132 aa24.55■■□□□ 1.52
CLN3-218ENST00000565688 KLRG1Q96E93 195 aa24.55■■□□□ 1.52
CLN3-218ENST00000565688 ABCC12Q96J65 1359 aa24.54■■□□□ 1.52
CLN3-218ENST00000565688 HTRA3P83110 453 aa24.54■■□□□ 1.52
CLN3-218ENST00000565688 WDR43Q15061 677 aaKnown RBP eCLIP24.54■■□□□ 1.52
CLN3-218ENST00000565688 ZNF34Q8IZ26 560 aa24.54■■□□□ 1.52
CLN3-218ENST00000565688 UBN2Q6ZU65 1347 aa24.54■■□□□ 1.52
CLN3-218ENST00000565688 EIF2S2P20042 333 aaKnown RBP24.53■■□□□ 1.52
CLN3-218ENST00000565688 RPGRQ92834 1020 aaKnown RBP24.53■■□□□ 1.52
CLN3-218ENST00000565688 DDNO94850 711 aaPredicted RBP24.52■■□□□ 1.52
CLN3-218ENST00000565688 PARP10Q53GL7 1025 aa24.52■■□□□ 1.52
CLN3-218ENST00000565688 IFFO2Q5TF58 517 aa24.52■■□□□ 1.52
CLN3-218ENST00000565688 SUSD4Q5VX71 490 aa24.52■■□□□ 1.52
CLN3-218ENST00000565688 PPP1R42Q7Z4L9 355 aa24.52■■□□□ 1.52
CLN3-218ENST00000565688 RUNDC1Q96C34 613 aa24.52■■□□□ 1.52
CLN3-218ENST00000565688 ZNF277Q9NRM2 450 aaPredicted RBP24.52■■□□□ 1.52
CLN3-218ENST00000565688 IQCA1LA6NCM1 817 aa24.51■■□□□ 1.51
CLN3-218ENST00000565688 HOXA10P31260 410 aaPredicted RBP24.51■■□□□ 1.51
CLN3-218ENST00000565688 PDIA6Q15084 440 aa24.51■■□□□ 1.51
CLN3-218ENST00000565688 CC2D2BQ6DHV5 1058 aa24.51■■□□□ 1.51
CLN3-218ENST00000565688 LRP10Q7Z4F1 713 aa24.51■■□□□ 1.51
CLN3-218ENST00000565688 CCDC146Q8IYE0 955 aa24.51■■□□□ 1.51
CLN3-218ENST00000565688 NTSR2O95665 410 aa24.5■■□□□ 1.51
CLN3-218ENST00000565688 NEUROD2Q15784 382 aa24.5■■□□□ 1.51
CLN3-218ENST00000565688 OLFM4Q6UX06 510 aa24.5■■□□□ 1.51
CLN3-218ENST00000565688 L3MBTL3Q96JM7 780 aaPredicted RBP24.5■■□□□ 1.51
CLN3-218ENST00000565688 GRIPAP1Q4V328 841 aa24.49■■□□□ 1.51
CLN3-218ENST00000565688 JMYQ8N9B5 988 aa24.49■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms