RNA–Protein interactions for RNA: ENST00000561071.5

MARK3-223, Transcript of microtubule affinity regulating kinase 3, human

TSL 3

Gene MARK3, Length 746 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MARK3-223	ENST00000561071	TCOF1	Q13428	1488 aa	Known RBP	10.92	□□□□□ -0.66
MARK3-223	ENST00000561071	ABCC5	O15440	1437 aa		10.92	□□□□□ -0.66
MARK3-223	ENST00000561071	ZNF142	P52746	1687 aa	Predicted RBP	10.92	□□□□□ -0.66
MARK3-223	ENST00000561071	DNMT1	P26358	1616 aa	Known RBP	10.91	□□□□□ -0.66
MARK3-223	ENST00000561071	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	10.91	□□□□□ -0.66
MARK3-223	ENST00000561071	MAST1	Q9Y2H9	1570 aa		10.91	□□□□□ -0.66
MARK3-223	ENST00000561071	USP17L15	C9J2P7	530 aa		10.91	□□□□□ -0.66
MARK3-223	ENST00000561071	USP17L10	C9JJH3	530 aa		10.91	□□□□□ -0.66
MARK3-223	ENST00000561071	USP17L13	C9JLJ4	530 aa		10.91	□□□□□ -0.66
MARK3-223	ENST00000561071	USP17L12	C9JPN9	530 aa		10.91	□□□□□ -0.66
MARK3-223	ENST00000561071	USP17L11	C9JVI0	530 aa		10.91	□□□□□ -0.66
MARK3-223	ENST00000561071	USP17L21	D6R901	530 aa		10.91	□□□□□ -0.66
MARK3-223	ENST00000561071	USP17L18	D6R9N7	530 aa		10.91	□□□□□ -0.66
MARK3-223	ENST00000561071	USP17L22	D6RA61	530 aa		10.91	□□□□□ -0.66
MARK3-223	ENST00000561071	USP17L17	D6RBQ6	530 aa		10.91	□□□□□ -0.66
MARK3-223	ENST00000561071	USP17L19	D6RCP7	530 aa		10.91	□□□□□ -0.66
MARK3-223	ENST00000561071	USP17L20	D6RJB6	530 aa		10.91	□□□□□ -0.66
MARK3-223	ENST00000561071	PPP1R15A	O75807	674 aa	Predicted RBP	10.91	□□□□□ -0.66
MARK3-223	ENST00000561071	PSME1	Q06323	249 aa		10.91	□□□□□ -0.66
MARK3-223	ENST00000561071	USP17L24	Q0WX57	530 aa		10.91	□□□□□ -0.66
MARK3-223	ENST00000561071	TRIM52	Q96A61	297 aa		10.91	□□□□□ -0.66
MARK3-223	ENST00000561071	DNAAF2	Q9NVR5	837 aa	Known RBP	10.91	□□□□□ -0.66
MARK3-223	ENST00000561071	PLA2R1	Q13018	1463 aa		10.91	□□□□□ -0.66
MARK3-223	ENST00000561071	ATP1A2	P50993	1020 aa		10.9	□□□□□ -0.66
MARK3-223	ENST00000561071	RELB	Q01201	579 aa		10.9	□□□□□ -0.66
MARK3-223	ENST00000561071	PTK7	Q13308	1070 aa		10.9	□□□□□ -0.66
MARK3-223	ENST00000561071	LARP1	Q6PKG0	1096 aa	Known RBP	10.9	□□□□□ -0.66
MARK3-223	ENST00000561071	CYP2U1	Q7Z449	544 aa		10.9	□□□□□ -0.66
MARK3-223	ENST00000561071	RAB6B	Q9NRW1	208 aa		10.9	□□□□□ -0.66
MARK3-223	ENST00000561071	ABCC3	O15438	1527 aa		10.89	□□□□□ -0.67
MARK3-223	ENST00000561071	FAM196B	A6NMK8	535 aa		10.89	□□□□□ -0.67
MARK3-223	ENST00000561071	ST8SIA5	O15466	376 aa		10.89	□□□□□ -0.67
MARK3-223	ENST00000561071	BMP1	P13497	986 aa		10.89	□□□□□ -0.67
MARK3-223	ENST00000561071	TPCN2	Q8NHX9	752 aa		10.89	□□□□□ -0.67
MARK3-223	ENST00000561071	ZNF395	Q9H8N7	513 aa	Predicted RBP	10.89	□□□□□ -0.67
MARK3-223	ENST00000561071	ARHGEF10L	Q9HCE6	1279 aa		10.89	□□□□□ -0.67
MARK3-223	ENST00000561071	KIF15	Q9NS87	1388 aa		10.89	□□□□□ -0.67
MARK3-223	ENST00000561071	RNF17	Q9BXT8	1623 aa	Known RBP	10.88	□□□□□ -0.67
MARK3-223	ENST00000561071	PTPN23	Q9H3S7	1636 aa		10.88	□□□□□ -0.67
MARK3-223	ENST00000561071	UBAP1L	F5GYI3	381 aa		10.88	□□□□□ -0.67
MARK3-223	ENST00000561071	AXIN1	O15169	862 aa		10.88	□□□□□ -0.67
MARK3-223	ENST00000561071	ATG7	O95352	703 aa		10.88	□□□□□ -0.67
MARK3-223	ENST00000561071	SMCP	P49901	116 aa	Predicted RBP	10.88	□□□□□ -0.67
MARK3-223	ENST00000561071	CTC1	Q2NKJ3	1217 aa		10.88	□□□□□ -0.67
MARK3-223	ENST00000561071	CCDC102B	Q68D86	513 aa		10.88	□□□□□ -0.67
MARK3-223	ENST00000561071	FGD6	Q6ZV73	1430 aa		10.88	□□□□□ -0.67
MARK3-223	ENST00000561071	ANKLE2	Q86XL3	938 aa		10.88	□□□□□ -0.67
MARK3-223	ENST00000561071	THEMIS	Q8N1K5	641 aa	Predicted RBP	10.88	□□□□□ -0.67
MARK3-223	ENST00000561071	MROH1	Q8NDA8	1641 aa		10.87	□□□□□ -0.67
MARK3-223	ENST00000561071	DAPK1	P53355	1430 aa		10.87	□□□□□ -0.67
MARK3-223	ENST00000561071	DKK1	O94907	266 aa		10.87	□□□□□ -0.67
MARK3-223	ENST00000561071	PTGIR	P43119	386 aa		10.87	□□□□□ -0.67
MARK3-223	ENST00000561071	SCNN1D	P51172	638 aa		10.87	□□□□□ -0.67
MARK3-223	ENST00000561071	FAM50A	Q14320	339 aa	Known RBP	10.87	□□□□□ -0.67
MARK3-223	ENST00000561071	LARGE2	Q8N3Y3	721 aa		10.87	□□□□□ -0.67
MARK3-223	ENST00000561071	ETNK1	Q9HBU6	452 aa		10.87	□□□□□ -0.67
MARK3-223	ENST00000561071	AAAS	Q9NRG9	546 aa		10.87	□□□□□ -0.67
MARK3-223	ENST00000561071	ZMIZ1	Q9ULJ6	1067 aa		10.87	□□□□□ -0.67
MARK3-223	ENST00000561071	DUOX2	Q9NRD8	1548 aa		10.87	□□□□□ -0.67
MARK3-223	ENST00000561071	FAM135A	Q9P2D6	1515 aa		10.87	□□□□□ -0.67
MARK3-223	ENST00000561071	CFAP65	Q6ZU64	1925 aa	Known RBP	10.86	□□□□□ -0.67
MARK3-223	ENST00000561071	TMEM229A	B2RXF0	380 aa		10.86	□□□□□ -0.67
MARK3-223	ENST00000561071	GNRH1	P01148	92 aa		10.86	□□□□□ -0.67
MARK3-223	ENST00000561071	DPYD	Q12882	1025 aa		10.86	□□□□□ -0.67
MARK3-223	ENST00000561071	SIX5	Q8N196	739 aa		10.86	□□□□□ -0.67
MARK3-223	ENST00000561071	LINC00528	Q8N1L1	170 aa		10.86	□□□□□ -0.67
MARK3-223	ENST00000561071	CRIPAK	Q8N1N5	446 aa		10.86	□□□□□ -0.67
MARK3-223	ENST00000561071	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	10.86	□□□□□ -0.67
MARK3-223	ENST00000561071	ARX	Q96QS3	562 aa		10.86	□□□□□ -0.67
MARK3-223	ENST00000561071	DACH1	Q9UI36	760 aa		10.86	□□□□□ -0.67
MARK3-223	ENST00000561071	NOVA2	Q9UNW9	492 aa	Known RBP	10.86	□□□□□ -0.67
MARK3-223	ENST00000561071	NEURL4	Q96JN8	1562 aa		10.86	□□□□□ -0.67
MARK3-223	ENST00000561071	UGGT1	Q9NYU2	1555 aa		10.86	□□□□□ -0.67
MARK3-223	ENST00000561071	CEP152	O94986	1710 aa		10.85	□□□□□ -0.67
MARK3-223	ENST00000561071		A0A1W2PRU2	124 aa		10.85	□□□□□ -0.67
MARK3-223	ENST00000561071	GDF10	P55107	478 aa		10.85	□□□□□ -0.67
MARK3-223	ENST00000561071	C6orf118	Q5T5N4	469 aa		10.85	□□□□□ -0.67
MARK3-223	ENST00000561071	MRPL14	Q6P1L8	145 aa	Known RBP	10.85	□□□□□ -0.67
MARK3-223	ENST00000561071	TRIM46	Q7Z4K8	759 aa		10.85	□□□□□ -0.67
MARK3-223	ENST00000561071	ANKMY2	Q8IV38	441 aa		10.85	□□□□□ -0.67
MARK3-223	ENST00000561071	ERVK-7	P63135	1459 aa		10.85	□□□□□ -0.67
MARK3-223	ENST00000561071	NLRP1	Q9C000	1473 aa		10.85	□□□□□ -0.67
MARK3-223	ENST00000561071	ACIN1	Q9UKV3	1341 aa	Known RBP	10.84	□□□□□ -0.67
MARK3-223	ENST00000561071	EIF2AK4	Q9P2K8	1649 aa	Known RBP	10.84	□□□□□ -0.67
MARK3-223	ENST00000561071	SFI1	A8K8P3	1242 aa		10.84	□□□□□ -0.67
MARK3-223	ENST00000561071	IL2RA	P01589	272 aa		10.84	□□□□□ -0.67
MARK3-223	ENST00000561071	PPARGC1B	Q86YN6	1023 aa	Known RBP	10.84	□□□□□ -0.67
MARK3-223	ENST00000561071	STK32A	Q8WU08	396 aa		10.84	□□□□□ -0.67
MARK3-223	ENST00000561071	TSEN34	Q9BSV6	310 aa	Known RBP	10.84	□□□□□ -0.67
MARK3-223	ENST00000561071	SHANK2	Q9UPX8	1470 aa		10.84	□□□□□ -0.67
MARK3-223	ENST00000561071	CROCC2	H7BZ55	1655 aa		10.83	□□□□□ -0.68
MARK3-223	ENST00000561071	SPATA31D1	Q6ZQQ2	1576 aa		10.83	□□□□□ -0.68
MARK3-223	ENST00000561071	IQSEC2	Q5JU85	1478 aa		10.83	□□□□□ -0.68
MARK3-223	ENST00000561071	DISP3	Q9P2K9	1392 aa		10.83	□□□□□ -0.68
MARK3-223	ENST00000561071	ELOA	Q14241	798 aa	Known RBP	10.83	□□□□□ -0.68
MARK3-223	ENST00000561071		Q6ZNB5	142 aa		10.83	□□□□□ -0.68
MARK3-223	ENST00000561071	PURB	Q96QR8	312 aa	Known RBP	10.83	□□□□□ -0.68
MARK3-223	ENST00000561071	ZNF358	Q9NW07	568 aa		10.83	□□□□□ -0.68
MARK3-223	ENST00000561071	SERTAD1	Q9UHV2	236 aa		10.83	□□□□□ -0.68
MARK3-223	ENST00000561071	NPHP4	O75161	1426 aa	Predicted RBP	10.83	□□□□□ -0.68

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