RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 EIF4A1P60842 406 aaKnown RBP21.43■■□□□ 1.02
SNX1-213ENST00000561026 NBPF5PQ86XG9 351 aaPredicted RBP21.43■■□□□ 1.02
SNX1-213ENST00000561026 BCORQ6W2J9 1755 aa21.43■■□□□ 1.02
SNX1-213ENST00000561026 DLG5Q8TDM6 1919 aa21.42■■□□□ 1.02
SNX1-213ENST00000561026 C21orf2O43822 256 aa21.42■■□□□ 1.02
SNX1-213ENST00000561026 DDX10Q13206 875 aaKnown RBP21.41■■□□□ 1.02
SNX1-213ENST00000561026 STYK1Q6J9G0 422 aa21.41■■□□□ 1.02
SNX1-213ENST00000561026 RBM46Q8TBY0 533 aaKnown RBP21.41■■□□□ 1.02
SNX1-213ENST00000561026 CNKSR1Q969H4 720 aa21.41■■□□□ 1.02
SNX1-213ENST00000561026 RRAGCQ9HB90 399 aa21.41■■□□□ 1.02
SNX1-213ENST00000561026 NIP7Q9Y221 180 aaKnown RBP eCLIP21.41■■□□□ 1.02
SNX1-213ENST00000561026 TPTE2Q6XPS3 522 aa21.4■■□□□ 1.02
SNX1-213ENST00000561026 C16orf71Q8IYS4 520 aaPredicted RBP21.4■■□□□ 1.02
SNX1-213ENST00000561026 MASTLQ96GX5 879 aa21.4■■□□□ 1.02
SNX1-213ENST00000561026 HLFQ16534 295 aa21.39■■□□□ 1.02
SNX1-213ENST00000561026 ZNF219Q9P2Y4 722 aaPredicted RBP21.39■■□□□ 1.02
SNX1-213ENST00000561026 COL11A2P13942 1736 aaPredicted RBP21.38■■□□□ 1.01
SNX1-213ENST00000561026 GLTPD2A6NH11 291 aa21.38■■□□□ 1.01
SNX1-213ENST00000561026 APLP1P51693 650 aa21.38■■□□□ 1.01
SNX1-213ENST00000561026 KDM3BQ7LBC6 1761 aa21.37■■□□□ 1.01
SNX1-213ENST00000561026 RIPK4P57078 832 aa21.37■■□□□ 1.01
SNX1-213ENST00000561026 PRPF40BQ6NWY9 871 aaKnown RBP21.37■■□□□ 1.01
SNX1-213ENST00000561026 NGEFQ8N5V2 710 aa21.37■■□□□ 1.01
SNX1-213ENST00000561026 KLRG2A4D1S0 409 aaPredicted RBP21.36■■□□□ 1.01
SNX1-213ENST00000561026 ERVV-1B6SEH8 477 aa21.36■■□□□ 1.01
SNX1-213ENST00000561026 RRP7AQ9Y3A4 280 aaKnown RBP21.36■■□□□ 1.01
SNX1-213ENST00000561026 FSTL1Q12841 308 aa21.36■■□□□ 1.01
SNX1-213ENST00000561026 LAMB4A4D0S4 1761 aa21.35■■□□□ 1.01
SNX1-213ENST00000561026 MYBBP1AQ9BQG0 1328 aaKnown RBP21.35■■□□□ 1.01
SNX1-213ENST00000561026 FAM177BA6PVY3 158 aa21.35■■□□□ 1.01
SNX1-213ENST00000561026 NPR1P16066 1061 aa21.35■■□□□ 1.01
SNX1-213ENST00000561026 TMPOP42166 694 aaKnown RBP21.35■■□□□ 1.01
SNX1-213ENST00000561026 SOGA3Q5TF21 947 aa21.35■■□□□ 1.01
SNX1-213ENST00000561026 TAOK3Q9H2K8 898 aa21.35■■□□□ 1.01
SNX1-213ENST00000561026 TSPYL4Q9UJ04 414 aa21.35■■□□□ 1.01
SNX1-213ENST00000561026 LTBP3Q9NS15 1303 aa21.34■■□□□ 1.01
SNX1-213ENST00000561026 MYL6BP14649 208 aa21.34■■□□□ 1.01
SNX1-213ENST00000561026 VEGFAP15692 232 aaPredicted RBP21.34■■□□□ 1.01
SNX1-213ENST00000561026 ERFEQ4G0M1 354 aa21.34■■□□□ 1.01
SNX1-213ENST00000561026 C7orf43Q8WVR3 580 aa21.34■■□□□ 1.01
SNX1-213ENST00000561026 MAP3K15Q6ZN16 1313 aa21.33■■□□□ 1.01
SNX1-213ENST00000561026 SLX4Q8IY92 1834 aa21.33■■□□□ 1.01
SNX1-213ENST00000561026 LMOD3Q0VAK6 560 aa21.33■■□□□ 1
SNX1-213ENST00000561026 KIF6Q6ZMV9 814 aa21.33■■□□□ 1
SNX1-213ENST00000561026 TTLL7Q6ZT98 887 aa21.33■■□□□ 1
SNX1-213ENST00000561026 BABAM1Q9NWV8 329 aa21.33■■□□□ 1
SNX1-213ENST00000561026 TNRC6CQ9HCJ0 1690 aaKnown RBP21.32■■□□□ 1
SNX1-213ENST00000561026 FER1L6Q2WGJ9 1857 aa21.32■■□□□ 1
SNX1-213ENST00000561026 GTF2E1P29083 439 aaPredicted RBP21.32■■□□□ 1
SNX1-213ENST00000561026 DPY19L2Q6NUT2 758 aa21.32■■□□□ 1
SNX1-213ENST00000561026 ERBB4Q15303 1308 aa21.32■■□□□ 1
SNX1-213ENST00000561026 CCDC88AQ3V6T2 1871 aa21.31■■□□□ 1
SNX1-213ENST00000561026 NYXQ9GZU5 481 aa21.31■■□□□ 1
SNX1-213ENST00000561026 DNAJC5GQ8N7S2 189 aa21.3■■□□□ 1
SNX1-213ENST00000561026 SMC1BQ8NDV3 1235 aa21.3■■□□□ 1
SNX1-213ENST00000561026 CCDC146Q8IYE0 955 aa21.29■■□□□ 1
SNX1-213ENST00000561026 ZBTB3Q9H5J0 574 aa21.29■■□□□ 1
SNX1-213ENST00000561026 TIAM2Q8IVF5 1701 aa21.29■■□□□ 1
SNX1-213ENST00000561026 POTECB2RU33 542 aa21.28■■□□□ 1
SNX1-213ENST00000561026 PDIA6Q15084 440 aa21.28■■□□□ 1
SNX1-213ENST00000561026 CCDC93Q567U6 631 aa21.28■■□□□ 1
SNX1-213ENST00000561026 NUTM1Q86Y26 1132 aa21.28■■□□□ 1
SNX1-213ENST00000561026 EIF2S2P20042 333 aaKnown RBP21.27■■□□□ 1
SNX1-213ENST00000561026 GPTP24298 496 aa21.27■■□□□ 1
SNX1-213ENST00000561026 ALDH1B1P30837 517 aa21.27■■□□□ 1
SNX1-213ENST00000561026 NEUROD2Q15784 382 aa21.27■■□□□ 1
SNX1-213ENST00000561026 CRY2Q49AN0 593 aa21.27■■□□□ 1
SNX1-213ENST00000561026 LRP10Q7Z4F1 713 aa21.27■■□□□ 1
SNX1-213ENST00000561026 RUNDC1Q96C34 613 aa21.27■■□□□ 1
SNX1-213ENST00000561026 ARFGEF2Q9Y6D5 1785 aa21.27■■□□□ 1
SNX1-213ENST00000561026 UBN2Q6ZU65 1347 aa21.26■□□□□ 0.99
SNX1-213ENST00000561026 WDR43Q15061 677 aaKnown RBP eCLIP21.26■□□□□ 0.99
SNX1-213ENST00000561026 SUSD4Q5VX71 490 aa21.26■□□□□ 0.99
SNX1-213ENST00000561026 GIGYF2Q6Y7W6 1299 aaKnown RBP21.26■□□□□ 0.99
SNX1-213ENST00000561026 ZNF34Q8IZ26 560 aa21.26■□□□□ 0.99
SNX1-213ENST00000561026 CACNA1SQ13698 1873 aa21.26■□□□□ 0.99
SNX1-213ENST00000561026 ABCC12Q96J65 1359 aa21.26■□□□□ 0.99
SNX1-213ENST00000561026 NUP98P52948 1817 aa21.26■□□□□ 0.99
SNX1-213ENST00000561026 RTKN2Q8IZC4 609 aa21.25■□□□□ 0.99
SNX1-213ENST00000561026 ADAMTS8Q9UP79 889 aa21.25■□□□□ 0.99
SNX1-213ENST00000561026 DICER1Q9UPY3 1922 aaKnown RBP21.25■□□□□ 0.99
SNX1-213ENST00000561026 IBTKQ9P2D0 1353 aaPredicted RBP21.25■□□□□ 0.99
SNX1-213ENST00000561026 CHL1O00533 1208 aa21.24■□□□□ 0.99
SNX1-213ENST00000561026 FKBP4Q02790 459 aaKnown RBP eCLIP21.24■□□□□ 0.99
SNX1-213ENST00000561026 OLFM4Q6UX06 510 aa21.24■□□□□ 0.99
SNX1-213ENST00000561026 TRIM35Q9UPQ4 493 aa21.24■□□□□ 0.99
SNX1-213ENST00000561026 HTRA3P83110 453 aa21.23■□□□□ 0.99
SNX1-213ENST00000561026 PROSER3Q2NL68 480 aa21.23■□□□□ 0.99
SNX1-213ENST00000561026 WDR90Q96KV7 1748 aa21.23■□□□□ 0.99
SNX1-213ENST00000561026 DDNO94850 711 aaPredicted RBP21.23■□□□□ 0.99
SNX1-213ENST00000561026 PRKRIP1Q9H875 184 aaPredicted RBP21.23■□□□□ 0.99
SNX1-213ENST00000561026 ZNF277Q9NRM2 450 aaPredicted RBP21.23■□□□□ 0.99
SNX1-213ENST00000561026 NTSR2O95665 410 aa21.22■□□□□ 0.99
SNX1-213ENST00000561026 ANXA1P04083 346 aa21.22■□□□□ 0.99
SNX1-213ENST00000561026 HOXA10P31260 410 aaPredicted RBP21.22■□□□□ 0.99
SNX1-213ENST00000561026 PARP10Q53GL7 1025 aa21.22■□□□□ 0.99
SNX1-213ENST00000561026 PPP1R42Q7Z4L9 355 aa21.22■□□□□ 0.99
SNX1-213ENST00000561026 NECTIN2Q92692 538 aa21.21■□□□□ 0.99
SNX1-213ENST00000561026 RIC1Q4ADV7 1423 aa21.21■□□□□ 0.99
SNX1-213ENST00000561026 KRT24Q2M2I5 525 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms