RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 SPON1Q9HCB6 807 aa12.88□□□□□ -0.35
USP3-216ENST00000559873 SMC4Q9NTJ3 1288 aa12.88□□□□□ -0.35
USP3-216ENST00000559873 SRP68Q9UHB9 627 aaKnown RBP12.88□□□□□ -0.35
USP3-216ENST00000559873 CACNA1FO60840 1977 aa12.88□□□□□ -0.35
USP3-216ENST00000559873 CAMTA2O94983 1202 aa12.87□□□□□ -0.35
USP3-216ENST00000559873 SMIM5Q71RC9 77 aa12.87□□□□□ -0.35
USP3-216ENST00000559873 LRP10Q7Z4F1 713 aa12.87□□□□□ -0.35
USP3-216ENST00000559873 PDGFDQ9GZP0 370 aaPredicted RBP12.87□□□□□ -0.35
USP3-216ENST00000559873 ZBTB3Q9H5J0 574 aa12.87□□□□□ -0.35
USP3-216ENST00000559873 ATP10DQ9P241 1426 aa12.87□□□□□ -0.35
USP3-216ENST00000559873 KIF16BQ96L93 1317 aa12.87□□□□□ -0.35
USP3-216ENST00000559873 TCERG1O14776 1098 aaKnown RBP12.86□□□□□ -0.35
USP3-216ENST00000559873 FLIIQ13045 1269 aa12.86□□□□□ -0.35
USP3-216ENST00000559873 FKBP5Q13451 457 aaPredicted RBP12.86□□□□□ -0.35
USP3-216ENST00000559873 MSL1Q68DK7 614 aa12.86□□□□□ -0.35
USP3-216ENST00000559873 TTLL7Q6ZT98 887 aa12.86□□□□□ -0.35
USP3-216ENST00000559873 ANKRD13DQ6ZTN6 518 aa12.86□□□□□ -0.35
USP3-216ENST00000559873 RIC3Q7Z5B4 369 aa12.86□□□□□ -0.35
USP3-216ENST00000559873 PLBD2Q8NHP8 589 aa12.86□□□□□ -0.35
USP3-216ENST00000559873 CARMIL3Q8ND23 1372 aa12.85□□□□□ -0.35
USP3-216ENST00000559873 FKBP8Q14318 412 aa12.85□□□□□ -0.35
USP3-216ENST00000559873 GIGYF2Q6Y7W6 1299 aaKnown RBP12.85□□□□□ -0.35
USP3-216ENST00000559873 SSH1Q8WYL5 1049 aa12.85□□□□□ -0.35
USP3-216ENST00000559873 PHAXQ9H814 394 aaKnown RBP12.85□□□□□ -0.35
USP3-216ENST00000559873 PARP3Q9Y6F1 533 aa12.85□□□□□ -0.35
USP3-216ENST00000559873 PTPRCP08575 1304 aa12.85□□□□□ -0.35
USP3-216ENST00000559873 COL24A1Q17RW2 1714 aa12.85□□□□□ -0.35
USP3-216ENST00000559873 LRP5O75197 1615 aa12.84□□□□□ -0.35
USP3-216ENST00000559873 MMP10P09238 476 aa12.84□□□□□ -0.35
USP3-216ENST00000559873 NEXNQ0ZGT2 675 aa12.84□□□□□ -0.35
USP3-216ENST00000559873 KSR2Q6VAB6 950 aa12.84□□□□□ -0.35
USP3-216ENST00000559873 SETDB2Q96T68 719 aa12.84□□□□□ -0.35
USP3-216ENST00000559873 BCL2L12Q9HB09 334 aa12.84□□□□□ -0.35
USP3-216ENST00000559873 ATF5Q9Y2D1 282 aaPredicted RBP12.84□□□□□ -0.35
USP3-216ENST00000559873 IBTKQ9P2D0 1353 aaPredicted RBP12.83□□□□□ -0.36
USP3-216ENST00000559873 NPHP1O15259 732 aa12.83□□□□□ -0.36
USP3-216ENST00000559873 RARSP54136 660 aaKnown RBP12.83□□□□□ -0.36
USP3-216ENST00000559873 BRPF1P55201 1214 aaPredicted RBP12.83□□□□□ -0.36
USP3-216ENST00000559873 PARP10Q53GL7 1025 aa12.83□□□□□ -0.36
USP3-216ENST00000559873 MRPL50Q8N5N7 158 aaKnown RBP12.83□□□□□ -0.36
USP3-216ENST00000559873 BCL2L13Q9BXK5 485 aa12.83□□□□□ -0.36
USP3-216ENST00000559873 PPP1R1BQ9UD71 204 aaPredicted RBP12.83□□□□□ -0.36
USP3-216ENST00000559873 NIP7Q9Y221 180 aaKnown RBP eCLIP12.83□□□□□ -0.36
USP3-216ENST00000559873 ARFGEF2Q9Y6D5 1785 aa12.83□□□□□ -0.36
USP3-216ENST00000559873 ANKRD36CQ5JPF3 1778 aa12.82□□□□□ -0.36
USP3-216ENST00000559873 NFIXQ14938 502 aa12.82□□□□□ -0.36
USP3-216ENST00000559873 HLFQ16534 295 aa12.82□□□□□ -0.36
USP3-216ENST00000559873 TBC1D9BQ66K14 1250 aa12.82□□□□□ -0.36
USP3-216ENST00000559873 BICDL1Q6ZP65 573 aa12.82□□□□□ -0.36
USP3-216ENST00000559873 NYXQ9GZU5 481 aa12.82□□□□□ -0.36
USP3-216ENST00000559873 MAP3K2Q9Y2U5 619 aa12.82□□□□□ -0.36
USP3-216ENST00000559873 RNF123Q5XPI4 1314 aa12.82□□□□□ -0.36
USP3-216ENST00000559873 PXDNLA1KZ92 1463 aa12.81□□□□□ -0.36
USP3-216ENST00000559873 PI4KAP2A4QPH2 592 aa12.81□□□□□ -0.36
USP3-216ENST00000559873 IPO8O15397 1037 aaKnown RBP12.81□□□□□ -0.36
USP3-216ENST00000559873 TCIRG1Q13488 830 aa12.81□□□□□ -0.36
USP3-216ENST00000559873 G2E3Q7L622 706 aa12.81□□□□□ -0.36
USP3-216ENST00000559873 NBPF5PQ86XG9 351 aaPredicted RBP12.81□□□□□ -0.36
USP3-216ENST00000559873 PI4KAP1Q8N8J0 262 aa12.81□□□□□ -0.36
USP3-216ENST00000559873 DNAAF4Q8WXU2 420 aa12.81□□□□□ -0.36
USP3-216ENST00000559873 API5Q9BZZ5 524 aaKnown RBP12.81□□□□□ -0.36
USP3-216ENST00000559873 NUP98P52948 1817 aa12.81□□□□□ -0.36
USP3-216ENST00000559873 ADCY9O60503 1353 aa12.81□□□□□ -0.36
USP3-216ENST00000559873 POLRMTO00411 1230 aaKnown RBP12.8□□□□□ -0.36
USP3-216ENST00000559873 GPTP24298 496 aa12.8□□□□□ -0.36
USP3-216ENST00000559873 TM4SF1P30408 202 aa12.8□□□□□ -0.36
USP3-216ENST00000559873 PTGER2P43116 358 aa12.8□□□□□ -0.36
USP3-216ENST00000559873 ST5P78524 1137 aa12.8□□□□□ -0.36
USP3-216ENST00000559873 PPP1R42Q7Z4L9 355 aa12.8□□□□□ -0.36
USP3-216ENST00000559873 ZNF34Q8IZ26 560 aa12.8□□□□□ -0.36
USP3-216ENST00000559873 CNBD1Q8NA66 436 aa12.8□□□□□ -0.36
USP3-216ENST00000559873 SGIP1Q9BQI5 828 aa12.8□□□□□ -0.36
USP3-216ENST00000559873 METTL22Q9BUU2 404 aaPredicted RBP12.8□□□□□ -0.36
USP3-216ENST00000559873 SERPINB2P05120 415 aa12.79□□□□□ -0.36
USP3-216ENST00000559873 GTF2E1P29083 439 aaPredicted RBP12.79□□□□□ -0.36
USP3-216ENST00000559873 DDR1Q08345 913 aa12.79□□□□□ -0.36
USP3-216ENST00000559873 TPTE2Q6XPS3 522 aa12.79□□□□□ -0.36
USP3-216ENST00000559873 ARHGAP45Q92619 1136 aa12.79□□□□□ -0.36
USP3-216ENST00000559873 MYD88Q99836 296 aa12.79□□□□□ -0.36
USP3-216ENST00000559873 RCAN3Q9UKA8 241 aa12.79□□□□□ -0.36
USP3-216ENST00000559873 HSP90B1P14625 803 aaKnown RBP12.78□□□□□ -0.36
USP3-216ENST00000559873 TRIM28Q13263 835 aaKnown RBP12.78□□□□□ -0.36
USP3-216ENST00000559873 ZKSCAN2Q63HK3 967 aa12.78□□□□□ -0.36
USP3-216ENST00000559873 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.78□□□□□ -0.36
USP3-216ENST00000559873 CCDC191Q8NCU4 936 aa12.78□□□□□ -0.36
USP3-216ENST00000559873 ISCA1Q9BUE6 129 aa12.78□□□□□ -0.36
USP3-216ENST00000559873 NRXN2Q9P2S2 1712 aa12.78□□□□□ -0.36
USP3-216ENST00000559873 C10orf71Q711Q0 1435 aa12.78□□□□□ -0.36
USP3-216ENST00000559873 NLRP10Q86W26 655 aa12.77□□□□□ -0.37
USP3-216ENST00000559873 KLHL34Q8N239 644 aa12.77□□□□□ -0.37
USP3-216ENST00000559873 LINS1Q8NG48 757 aa12.77□□□□□ -0.37
USP3-216ENST00000559873 FRAT1Q92837 279 aaPredicted RBP12.77□□□□□ -0.37
USP3-216ENST00000559873 UTP14AQ9BVJ6 771 aaKnown RBP12.77□□□□□ -0.37
USP3-216ENST00000559873 CWC25Q9NXE8 425 aaPredicted RBP12.77□□□□□ -0.37
USP3-216ENST00000559873 NOB1Q9ULX3 412 aaKnown RBP12.77□□□□□ -0.37
USP3-216ENST00000559873 UBN2Q6ZU65 1347 aa12.77□□□□□ -0.37
USP3-216ENST00000559873 FAM177BA6PVY3 158 aa12.76□□□□□ -0.37
USP3-216ENST00000559873 F6X3S4 739 aa12.76□□□□□ -0.37
USP3-216ENST00000559873 ATP5J2-PTCD1G3V325 749 aa12.76□□□□□ -0.37
USP3-216ENST00000559873 BCAR3O75815 825 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 149.7 ms