RNA–Protein interactions for RNA: ENST00000558253.5

SPG11-209, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 879 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-209ENST00000558253 BTBD11A6QL63 1104 aa10.2□□□□□ -0.78
SPG11-209ENST00000558253 HSP90AA1P07900 732 aaKnown RBP10.2□□□□□ -0.78
SPG11-209ENST00000558253 MCCP23508 829 aa10.2□□□□□ -0.78
SPG11-209ENST00000558253 C1orf167Q5SNV9 1468 aa10.2□□□□□ -0.78
SPG11-209ENST00000558253 KIF2CQ99661 725 aa10.2□□□□□ -0.78
SPG11-209ENST00000558253 HYPKQ9NX55 129 aa10.2□□□□□ -0.78
SPG11-209ENST00000558253 N4BP2Q86UW6 1770 aaPredicted RBP10.19□□□□□ -0.78
SPG11-209ENST00000558253 F6X3S4 739 aa10.19□□□□□ -0.78
SPG11-209ENST00000558253 RNMTO43148 476 aaKnown RBP10.19□□□□□ -0.78
SPG11-209ENST00000558253 DDX58O95786 925 aaKnown RBP10.19□□□□□ -0.78
SPG11-209ENST00000558253 ATF3P18847 181 aa10.19□□□□□ -0.78
SPG11-209ENST00000558253 ANAPC15P60006 121 aa10.19□□□□□ -0.78
SPG11-209ENST00000558253 CLEC17AQ6ZS10 378 aa10.19□□□□□ -0.78
SPG11-209ENST00000558253 CDAN1Q8IWY9 1227 aa10.19□□□□□ -0.78
SPG11-209ENST00000558253 ANKRD24Q8TF21 1146 aa10.19□□□□□ -0.78
SPG11-209ENST00000558253 IL17RAQ96F46 866 aa10.19□□□□□ -0.78
SPG11-209ENST00000558253 USP44Q9H0E7 712 aa10.19□□□□□ -0.78
SPG11-209ENST00000558253 LTN1O94822 1766 aa10.19□□□□□ -0.78
SPG11-209ENST00000558253 LMO7Q8WWI1 1683 aa10.18□□□□□ -0.78
SPG11-209ENST00000558253 HEG1Q9ULI3 1381 aa10.18□□□□□ -0.78
SPG11-209ENST00000558253 SALL3Q9BXA9 1300 aa10.18□□□□□ -0.78
SPG11-209ENST00000558253 GOLGA6L22H0YM25 854 aa10.18□□□□□ -0.78
SPG11-209ENST00000558253 MX1P20591 662 aa10.18□□□□□ -0.78
SPG11-209ENST00000558253 NUCB2P80303 420 aa10.18□□□□□ -0.78
SPG11-209ENST00000558253 MTX1Q13505 466 aa10.18□□□□□ -0.78
SPG11-209ENST00000558253 CADPS2Q86UW7 1296 aa10.18□□□□□ -0.78
SPG11-209ENST00000558253 ERC1Q8IUD2 1116 aa10.18□□□□□ -0.78
SPG11-209ENST00000558253 DNAAF4Q8WXU2 420 aa10.18□□□□□ -0.78
SPG11-209ENST00000558253 KIF1BPQ96EK5 621 aa10.18□□□□□ -0.78
SPG11-209ENST00000558253 SPG7Q9UQ90 795 aa10.18□□□□□ -0.78
SPG11-209ENST00000558253 FAM208AQ9UK61 1670 aaKnown RBP10.18□□□□□ -0.78
SPG11-209ENST00000558253 RAB3GAP1Q15042 981 aa10.17□□□□□ -0.78
SPG11-209ENST00000558253 C16orf71Q8IYS4 520 aaPredicted RBP10.17□□□□□ -0.78
SPG11-209ENST00000558253 CAMTA1Q9Y6Y1 1673 aa10.17□□□□□ -0.78
SPG11-209ENST00000558253 NPHP3Q7Z494 1330 aa10.16□□□□□ -0.78
SPG11-209ENST00000558253 GIGYF1O75420 1035 aaPredicted RBP10.16□□□□□ -0.78
SPG11-209ENST00000558253 BEND3Q5T5X7 828 aa10.16□□□□□ -0.78
SPG11-209ENST00000558253 TMEM92Q6UXU6 159 aa10.16□□□□□ -0.78
SPG11-209ENST00000558253 KSR2Q6VAB6 950 aa10.16□□□□□ -0.78
SPG11-209ENST00000558253 RAPGEF4Q8WZA2 1011 aa10.16□□□□□ -0.78
SPG11-209ENST00000558253 ORAI2Q96SN7 254 aa10.16□□□□□ -0.78
SPG11-209ENST00000558253 LGR6Q9HBX8 967 aa10.16□□□□□ -0.78
SPG11-209ENST00000558253 LRRFIP2Q9Y608 721 aaKnown RBP10.16□□□□□ -0.78
SPG11-209ENST00000558253 TTC41PQ6P2S7 1318 aa10.15□□□□□ -0.78
SPG11-209ENST00000558253 USP42Q9H9J4 1324 aaKnown RBP10.15□□□□□ -0.78
SPG11-209ENST00000558253 SNPHO15079 494 aa10.15□□□□□ -0.78
SPG11-209ENST00000558253 PAXIP1Q6ZW49 1069 aaPredicted RBP10.15□□□□□ -0.78
SPG11-209ENST00000558253 USHBP1Q8N6Y0 703 aa10.15□□□□□ -0.78
SPG11-209ENST00000558253 GPATCH3Q96I76 525 aa10.15□□□□□ -0.78
SPG11-209ENST00000558253 DDX21Q9NR30 783 aaKnown RBP eCLIP10.15□□□□□ -0.78
SPG11-209ENST00000558253 KDM3BQ7LBC6 1761 aa10.15□□□□□ -0.78
SPG11-209ENST00000558253 TRPM3Q9HCF6 1732 aaPredicted RBP10.15□□□□□ -0.78
SPG11-209ENST00000558253 UTYO14607 1347 aa10.14□□□□□ -0.79
SPG11-209ENST00000558253 ERBB3P21860 1342 aa10.14□□□□□ -0.79
SPG11-209ENST00000558253 PI4KAP2A4QPH2 592 aa10.14□□□□□ -0.79
SPG11-209ENST00000558253 SMARCA5O60264 1052 aaPredicted RBP10.14□□□□□ -0.79
SPG11-209ENST00000558253 TRAK2O60296 914 aa10.14□□□□□ -0.79
SPG11-209ENST00000558253 TATP17735 454 aaPredicted RBP10.14□□□□□ -0.79
SPG11-209ENST00000558253 EIF2S2P20042 333 aaKnown RBP10.14□□□□□ -0.79
SPG11-209ENST00000558253 PI4KAP1Q8N8J0 262 aa10.14□□□□□ -0.79
SPG11-209ENST00000558253 LINS1Q8NG48 757 aa10.14□□□□□ -0.79
SPG11-209ENST00000558253 ESYT1Q9BSJ8 1104 aa10.14□□□□□ -0.79
SPG11-209ENST00000558253 CHPF2Q9P2E5 772 aa10.14□□□□□ -0.79
SPG11-209ENST00000558253 EXOC6BQ9Y2D4 811 aa10.14□□□□□ -0.79
SPG11-209ENST00000558253 CPDO75976 1380 aa10.14□□□□□ -0.79
SPG11-209ENST00000558253 ADAMTS7Q9UKP4 1686 aa10.13□□□□□ -0.79
SPG11-209ENST00000558253 PNMA6EA0A0J9YXQ4 647 aa10.13□□□□□ -0.79
SPG11-209ENST00000558253 SRGAP3O43295 1099 aa10.13□□□□□ -0.79
SPG11-209ENST00000558253 SURF6O75683 361 aaKnown RBP10.13□□□□□ -0.79
SPG11-209ENST00000558253 LARP1Q6PKG0 1096 aaKnown RBP10.13□□□□□ -0.79
SPG11-209ENST00000558253 MPRIPQ6WCQ1 1025 aa10.13□□□□□ -0.79
SPG11-209ENST00000558253 PPP1R42Q7Z4L9 355 aa10.13□□□□□ -0.79
SPG11-209ENST00000558253 IFNL2Q8IZJ0 200 aa10.13□□□□□ -0.79
SPG11-209ENST00000558253 OTUD7AQ8TE49 926 aaPredicted RBP10.13□□□□□ -0.79
SPG11-209ENST00000558253 RUFY2Q8WXA3 655 aa10.13□□□□□ -0.79
SPG11-209ENST00000558253 PHAXQ9H814 394 aaKnown RBP10.13□□□□□ -0.79
SPG11-209ENST00000558253 GOLGA6L3A6NEY3 463 aa10.12□□□□□ -0.79
SPG11-209ENST00000558253 APBB1O00213 710 aa10.12□□□□□ -0.79
SPG11-209ENST00000558253 HIP1O00291 1037 aa10.12□□□□□ -0.79
SPG11-209ENST00000558253 KIF3CO14782 793 aa10.12□□□□□ -0.79
SPG11-209ENST00000558253 GLRX3O76003 335 aaKnown RBP10.12□□□□□ -0.79
SPG11-209ENST00000558253 CHMLP26374 656 aa10.12□□□□□ -0.79
SPG11-209ENST00000558253 LMOD2Q6P5Q4 547 aa10.12□□□□□ -0.79
SPG11-209ENST00000558253 TICAM2Q86XR7 235 aa10.12□□□□□ -0.79
SPG11-209ENST00000558253 CNTROBQ8N137 903 aa10.12□□□□□ -0.79
SPG11-209ENST00000558253 CLASRPQ8N2M8 674 aaKnown RBP10.12□□□□□ -0.79
SPG11-209ENST00000558253 RHPN1Q8TCX5 695 aa10.12□□□□□ -0.79
SPG11-209ENST00000558253 TNPO1Q92973 898 aaKnown RBP10.12□□□□□ -0.79
SPG11-209ENST00000558253 LRRC59Q96AG4 307 aaKnown RBP10.12□□□□□ -0.79
SPG11-209ENST00000558253 INTS4Q96HW7 963 aaKnown RBP10.12□□□□□ -0.79
SPG11-209ENST00000558253 DCAF5Q96JK2 942 aa10.12□□□□□ -0.79
SPG11-209ENST00000558253 C9orf78Q9NZ63 289 aaPredicted RBP10.12□□□□□ -0.79
SPG11-209ENST00000558253 ERBB4Q15303 1308 aa10.11□□□□□ -0.79
SPG11-209ENST00000558253 ZBTB7CA1YPR0 619 aa10.11□□□□□ -0.79
SPG11-209ENST00000558253 TRIM6-TRIM34B2RNG4 842 aa10.11□□□□□ -0.79
SPG11-209ENST00000558253 PDIA4P13667 645 aaKnown RBP10.11□□□□□ -0.79
SPG11-209ENST00000558253 MRE11P49959 708 aa10.11□□□□□ -0.79
SPG11-209ENST00000558253 NEXNQ0ZGT2 675 aa10.11□□□□□ -0.79
SPG11-209ENST00000558253 NECTIN2Q92692 538 aa10.11□□□□□ -0.79
SPG11-209ENST00000558253 SLC52A2Q9HAB3 445 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms