RNA–Protein interactions for RNA: ENST00000557554.5

ABCD4-227, Transcript of ATP binding cassette subfamily D member 4, human

TSL 4

Gene ABCD4, Length 523 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-227	ENST00000557554	CACNA1S	Q13698	1873 aa		13.93	□□□□□ -0.18
ABCD4-227	ENST00000557554	SCN11A	Q9UI33	1791 aa		13.92	□□□□□ -0.18
ABCD4-227	ENST00000557554	FZD9	O00144	591 aa		13.92	□□□□□ -0.18
ABCD4-227	ENST00000557554	EIF5	P55010	431 aa	Known RBP	13.92	□□□□□ -0.18
ABCD4-227	ENST00000557554	SOGA3	Q5TF21	947 aa		13.92	□□□□□ -0.18
ABCD4-227	ENST00000557554	RNF123	Q5XPI4	1314 aa		13.91	□□□□□ -0.18
ABCD4-227	ENST00000557554	AOC2	O75106	756 aa		13.91	□□□□□ -0.18
ABCD4-227	ENST00000557554	ARFGEF2	Q9Y6D5	1785 aa		13.91	□□□□□ -0.18
ABCD4-227	ENST00000557554	CA12	O43570	354 aa		13.9	□□□□□ -0.18
ABCD4-227	ENST00000557554	SLC39A6	Q13433	755 aa		13.9	□□□□□ -0.18
ABCD4-227	ENST00000557554	DGKZ	Q13574	1117 aa		13.9	□□□□□ -0.18
ABCD4-227	ENST00000557554	C1orf141	Q5JVX7	400 aa		13.9	□□□□□ -0.18
ABCD4-227	ENST00000557554	SLC52A2	Q9HAB3	445 aa		13.9	□□□□□ -0.18
ABCD4-227	ENST00000557554	LGR6	Q9HBX8	967 aa		13.9	□□□□□ -0.18
ABCD4-227	ENST00000557554	TLL2	Q9Y6L7	1015 aa		13.9	□□□□□ -0.18
ABCD4-227	ENST00000557554	PRPF38B	Q5VTL8	546 aa	Known RBP	13.89	□□□□□ -0.19
ABCD4-227	ENST00000557554	AEBP1	Q8IUX7	1158 aa		13.89	□□□□□ -0.19
ABCD4-227	ENST00000557554	VSIG10	Q8N0Z9	540 aa		13.89	□□□□□ -0.19
ABCD4-227	ENST00000557554	GPC2	Q8N158	579 aa		13.89	□□□□□ -0.19
ABCD4-227	ENST00000557554	MASTL	Q96GX5	879 aa		13.89	□□□□□ -0.19
ABCD4-227	ENST00000557554	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.89	□□□□□ -0.19
ABCD4-227	ENST00000557554	TRPM7	Q96QT4	1865 aa		13.89	□□□□□ -0.19
ABCD4-227	ENST00000557554	CANX	P27824	592 aa	Known RBP	13.88	□□□□□ -0.19
ABCD4-227	ENST00000557554	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
ABCD4-227	ENST00000557554	KLRG2	A4D1S0	409 aa	Predicted RBP	13.87	□□□□□ -0.19
ABCD4-227	ENST00000557554	TRAF5	O00463	557 aa		13.87	□□□□□ -0.19
ABCD4-227	ENST00000557554	GRM1	Q13255	1194 aa		13.87	□□□□□ -0.19
ABCD4-227	ENST00000557554	SAPCD2	Q86UD0	394 aa		13.87	□□□□□ -0.19
ABCD4-227	ENST00000557554		A0A087WZG4	1122 aa		13.86	□□□□□ -0.19
ABCD4-227	ENST00000557554	BRPF1	P55201	1214 aa	Predicted RBP	13.86	□□□□□ -0.19
ABCD4-227	ENST00000557554	CCDC93	Q567U6	631 aa		13.86	□□□□□ -0.19
ABCD4-227	ENST00000557554	OLFM4	Q6UX06	510 aa		13.86	□□□□□ -0.19
ABCD4-227	ENST00000557554	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.86	□□□□□ -0.19
ABCD4-227	ENST00000557554	HHIPL1	Q96JK4	782 aa		13.85	□□□□□ -0.19
ABCD4-227	ENST00000557554	TBC1D2B	Q9UPU7	963 aa		13.85	□□□□□ -0.19
ABCD4-227	ENST00000557554	IARS	P41252	1262 aa	Known RBP	13.84	□□□□□ -0.19
ABCD4-227	ENST00000557554	EPS15	P42566	896 aa		13.84	□□□□□ -0.19
ABCD4-227	ENST00000557554	TNNT2	P45379	298 aa	Predicted RBP	13.84	□□□□□ -0.19
ABCD4-227	ENST00000557554	SCNN1D	P51172	638 aa		13.84	□□□□□ -0.19
ABCD4-227	ENST00000557554	SOX10	P56693	466 aa		13.84	□□□□□ -0.19
ABCD4-227	ENST00000557554	CDCA8	Q53HL2	280 aa		13.84	□□□□□ -0.19
ABCD4-227	ENST00000557554	AKAP4	Q5JQC9	854 aa		13.84	□□□□□ -0.19
ABCD4-227	ENST00000557554	RTKN2	Q8IZC4	609 aa		13.84	□□□□□ -0.19
ABCD4-227	ENST00000557554	CNBD1	Q8NA66	436 aa		13.84	□□□□□ -0.19
ABCD4-227	ENST00000557554	SETDB2	Q96T68	719 aa		13.84	□□□□□ -0.19
ABCD4-227	ENST00000557554	MRC1	P22897	1456 aa		13.83	□□□□□ -0.2
ABCD4-227	ENST00000557554	RNMT	O43148	476 aa	Known RBP	13.83	□□□□□ -0.2
ABCD4-227	ENST00000557554	SYNE4	Q8N205	404 aa		13.83	□□□□□ -0.2
ABCD4-227	ENST00000557554	SNED1	Q8TER0	1413 aa		13.82	□□□□□ -0.2
ABCD4-227	ENST00000557554	UBR2	Q8IWV8	1755 aa		13.82	□□□□□ -0.2
ABCD4-227	ENST00000557554	CAMTA2	O94983	1202 aa		13.82	□□□□□ -0.2
ABCD4-227	ENST00000557554	STARD3NL	O95772	234 aa		13.82	□□□□□ -0.2
ABCD4-227	ENST00000557554	NPR1	P16066	1061 aa		13.82	□□□□□ -0.2
ABCD4-227	ENST00000557554	CIAPIN1	Q6FI81	312 aa		13.82	□□□□□ -0.2
ABCD4-227	ENST00000557554	SULT6B1	Q6IMI4	303 aa		13.82	□□□□□ -0.2
ABCD4-227	ENST00000557554	USP50	Q70EL3	339 aa	Predicted RBP	13.82	□□□□□ -0.2
ABCD4-227	ENST00000557554	ZIC5	Q96T25	663 aa		13.82	□□□□□ -0.2
ABCD4-227	ENST00000557554	COL4A5	P29400	1685 aa		13.82	□□□□□ -0.2
ABCD4-227	ENST00000557554	SCN7A	Q01118	1682 aa		13.82	□□□□□ -0.2
ABCD4-227	ENST00000557554	ST5	P78524	1137 aa		13.81	□□□□□ -0.2
ABCD4-227	ENST00000557554	IL6ST	P40189	918 aa	Predicted RBP	13.8	□□□□□ -0.2
ABCD4-227	ENST00000557554	PSMD1	Q99460	953 aa		13.8	□□□□□ -0.2
ABCD4-227	ENST00000557554	PGAP2	Q9UHJ9	254 aa		13.79	□□□□□ -0.2
ABCD4-227	ENST00000557554	GJA3	Q9Y6H8	435 aa		13.79	□□□□□ -0.2
ABCD4-227	ENST00000557554	CELF2	O95319	508 aa	Known RBP	13.78	□□□□□ -0.2
ABCD4-227	ENST00000557554	LMOD1	P29536	600 aa	Predicted RBP	13.78	□□□□□ -0.2
ABCD4-227	ENST00000557554	IL13	P35225	146 aa		13.78	□□□□□ -0.2
ABCD4-227	ENST00000557554	JDP2	Q8WYK2	163 aa		13.78	□□□□□ -0.2
ABCD4-227	ENST00000557554	ZNF496	Q96IT1	587 aa	Predicted RBP	13.78	□□□□□ -0.2
ABCD4-227	ENST00000557554	EIF6	P56537	245 aa	Known RBP	13.77	□□□□□ -0.21
ABCD4-227	ENST00000557554	BCOR	Q6W2J9	1755 aa		13.76	□□□□□ -0.21
ABCD4-227	ENST00000557554	NPHP1	O15259	732 aa		13.76	□□□□□ -0.21
ABCD4-227	ENST00000557554	A1BG	P04217	495 aa		13.76	□□□□□ -0.21
ABCD4-227	ENST00000557554	ALDH1B1	P30837	517 aa		13.76	□□□□□ -0.21
ABCD4-227	ENST00000557554	NOG	Q13253	232 aa		13.76	□□□□□ -0.21
ABCD4-227	ENST00000557554	CLEC4G	Q6UXB4	293 aa		13.76	□□□□□ -0.21
ABCD4-227	ENST00000557554	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.76	□□□□□ -0.21
ABCD4-227	ENST00000557554	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.75	□□□□□ -0.21
ABCD4-227	ENST00000557554	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.75	□□□□□ -0.21
ABCD4-227	ENST00000557554	GPRC5D	Q9NZD1	345 aa		13.75	□□□□□ -0.21
ABCD4-227	ENST00000557554	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.75	□□□□□ -0.21
ABCD4-227	ENST00000557554	HEG1	Q9ULI3	1381 aa		13.74	□□□□□ -0.21
ABCD4-227	ENST00000557554	FAM155A	B1AL88	458 aa	Predicted RBP	13.74	□□□□□ -0.21
ABCD4-227	ENST00000557554	MTHFSD	Q2M296	383 aa	Known RBP	13.74	□□□□□ -0.21
ABCD4-227	ENST00000557554	DZIP3	Q86Y13	1208 aa	Known RBP	13.74	□□□□□ -0.21
ABCD4-227	ENST00000557554	ADARB2	Q9NS39	739 aa	Known RBP	13.74	□□□□□ -0.21
ABCD4-227	ENST00000557554	SAGE1	Q9NXZ1	904 aa		13.74	□□□□□ -0.21
ABCD4-227	ENST00000557554	HIRA	P54198	1017 aa	Predicted RBP	13.73	□□□□□ -0.21
ABCD4-227	ENST00000557554	HABP4	Q5JVS0	413 aa	Known RBP	13.73	□□□□□ -0.21
ABCD4-227	ENST00000557554	ZNF790	Q6PG37	636 aa		13.73	□□□□□ -0.21
ABCD4-227	ENST00000557554	TPTE2	Q6XPS3	522 aa		13.73	□□□□□ -0.21
ABCD4-227	ENST00000557554	CRY2	Q49AN0	593 aa		13.72	□□□□□ -0.21
ABCD4-227	ENST00000557554	CC2D2B	Q6DHV5	1058 aa		13.72	□□□□□ -0.21
ABCD4-227	ENST00000557554	TTC5	Q8N0Z6	440 aa		13.72	□□□□□ -0.21
ABCD4-227	ENST00000557554	GCC1	Q96CN9	775 aa		13.72	□□□□□ -0.21
ABCD4-227	ENST00000557554	RNF186	Q9NXI6	227 aa		13.72	□□□□□ -0.21
ABCD4-227	ENST00000557554	ZC3H15	Q8WU90	426 aa	Known RBP	13.71	□□□□□ -0.21
ABCD4-227	ENST00000557554	CDC37L1	Q7L3B6	337 aa		13.7	□□□□□ -0.22
ABCD4-227	ENST00000557554	CTU1	Q7Z7A3	348 aa	Known RBP	13.7	□□□□□ -0.22
ABCD4-227	ENST00000557554	LARGE2	Q8N3Y3	721 aa		13.7	□□□□□ -0.22

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