RNA–Protein interactions for RNA: ENST00000557265.5

SNX6-209, Transcript of sorting nexin 6, humanhuman

TSL 3

Gene SNX6, Length 725 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-209ENST00000557265 USP16Q9Y5T5 823 aa16.54■□□□□ 0.24
SNX6-209ENST00000557265 TIAM2Q8IVF5 1701 aa16.53■□□□□ 0.24
SNX6-209ENST00000557265 NBPF5PQ86XG9 351 aaPredicted RBP16.53■□□□□ 0.24
SNX6-209ENST00000557265 C7orf43Q8WVR3 580 aa16.53■□□□□ 0.24
SNX6-209ENST00000557265 PHACTR3Q96KR7 559 aa16.53■□□□□ 0.24
SNX6-209ENST00000557265 UBR2Q8IWV8 1755 aa16.53■□□□□ 0.24
SNX6-209ENST00000557265 CEMIPQ8WUJ3 1361 aa16.52■□□□□ 0.24
SNX6-209ENST00000557265 IQCA1LA6NCM1 817 aa16.52■□□□□ 0.24
SNX6-209ENST00000557265 COL3A1P02461 1466 aaPredicted RBP16.51■□□□□ 0.23
SNX6-209ENST00000557265 PRAMEF22A3QJZ6 481 aa16.51■□□□□ 0.23
SNX6-209ENST00000557265 CCDC93Q567U6 631 aa16.51■□□□□ 0.23
SNX6-209ENST00000557265 CLEC4GQ6UXB4 293 aa16.51■□□□□ 0.23
SNX6-209ENST00000557265 LDHDQ86WU2 507 aa16.51■□□□□ 0.23
SNX6-209ENST00000557265 L3MBTL3Q96JM7 780 aaPredicted RBP16.51■□□□□ 0.23
SNX6-209ENST00000557265 TAF1DQ9H5J8 278 aaPredicted RBP16.51■□□□□ 0.23
SNX6-209ENST00000557265 ANKRD31Q8N7Z5 1873 aa16.5■□□□□ 0.23
SNX6-209ENST00000557265 NPR1P16066 1061 aa16.5■□□□□ 0.23
SNX6-209ENST00000557265 PRKAR2BP31323 418 aa16.5■□□□□ 0.23
SNX6-209ENST00000557265 PASKQ96RG2 1323 aa16.49■□□□□ 0.23
SNX6-209ENST00000557265 SNRPA1P09661 255 aaKnown RBP16.49■□□□□ 0.23
SNX6-209ENST00000557265 COL11A2P13942 1736 aaPredicted RBP16.49■□□□□ 0.23
SNX6-209ENST00000557265 ZNF277Q9NRM2 450 aaPredicted RBP16.49■□□□□ 0.23
SNX6-209ENST00000557265 ZNF652Q9Y2D9 606 aa16.49■□□□□ 0.23
SNX6-209ENST00000557265 SCN7AQ01118 1682 aa16.49■□□□□ 0.23
SNX6-209ENST00000557265 NPC1L1Q9UHC9 1359 aa16.49■□□□□ 0.23
SNX6-209ENST00000557265 KLRG2A4D1S0 409 aaPredicted RBP16.48■□□□□ 0.23
SNX6-209ENST00000557265 FOXN1O15353 648 aa16.48■□□□□ 0.23
SNX6-209ENST00000557265 FKBP4Q02790 459 aaKnown RBP eCLIP16.48■□□□□ 0.23
SNX6-209ENST00000557265 EAPPQ56P03 285 aaPredicted RBP16.48■□□□□ 0.23
SNX6-209ENST00000557265 OLFM4Q6UX06 510 aa16.48■□□□□ 0.23
SNX6-209ENST00000557265 TPTE2Q6XPS3 522 aa16.48■□□□□ 0.23
SNX6-209ENST00000557265 RSPH6AQ9H0K4 717 aa16.48■□□□□ 0.23
SNX6-209ENST00000557265 NIP7Q9Y221 180 aaKnown RBP eCLIP16.48■□□□□ 0.23
SNX6-209ENST00000557265 CNTNAP1P78357 1384 aa16.48■□□□□ 0.23
SNX6-209ENST00000557265 FER1L6Q2WGJ9 1857 aa16.48■□□□□ 0.23
SNX6-209ENST00000557265 CCDC88AQ3V6T2 1871 aa16.48■□□□□ 0.23
SNX6-209ENST00000557265 ZNF541Q9H0D2 1346 aa16.47■□□□□ 0.23
SNX6-209ENST00000557265 FAM177BA6PVY3 158 aa16.47■□□□□ 0.23
SNX6-209ENST00000557265 ITGBL1O95965 494 aaPredicted RBP16.47■□□□□ 0.23
SNX6-209ENST00000557265 MCM10Q7L590 875 aa16.47■□□□□ 0.23
SNX6-209ENST00000557265 RTF1Q92541 710 aaKnown RBP16.47■□□□□ 0.23
SNX6-209ENST00000557265 SLX4Q8IY92 1834 aa16.47■□□□□ 0.23
SNX6-209ENST00000557265 TMEM88BA6NKF7 163 aa16.46■□□□□ 0.23
SNX6-209ENST00000557265 NBPF26B4DH59 902 aa16.46■□□□□ 0.23
SNX6-209ENST00000557265 VEGFBP49765 207 aa16.46■□□□□ 0.23
SNX6-209ENST00000557265 NBPF10Q6P3W6 841 aaKnown RBP16.46■□□□□ 0.23
SNX6-209ENST00000557265 RTKN2Q8IZC4 609 aa16.46■□□□□ 0.23
SNX6-209ENST00000557265 NBPF15Q8N660 670 aa16.46■□□□□ 0.23
SNX6-209ENST00000557265 CFAP53Q96M91 514 aa16.46■□□□□ 0.23
SNX6-209ENST00000557265 HACL1Q9UJ83 578 aa16.46■□□□□ 0.23
SNX6-209ENST00000557265 CLEC11AQ9Y240 323 aa16.46■□□□□ 0.23
SNX6-209ENST00000557265 VIRMAQ69YN4 1812 aaKnown RBP16.45■□□□□ 0.22
SNX6-209ENST00000557265 EPHX2P34913 555 aa16.45■□□□□ 0.22
SNX6-209ENST00000557265 U2AF1L5P0DN76 240 aaPredicted RBP16.44■□□□□ 0.22
SNX6-209ENST00000557265 U2AF1Q01081 240 aaKnown RBP eCLIP16.44■□□□□ 0.22
SNX6-209ENST00000557265 SYNE4Q8N205 404 aa16.44■□□□□ 0.22
SNX6-209ENST00000557265 AIDAQ96BJ3 306 aa16.44■□□□□ 0.22
SNX6-209ENST00000557265 PRDM10Q9NQV6 1147 aa16.44■□□□□ 0.22
SNX6-209ENST00000557265 NUDCQ9Y266 331 aa16.44■□□□□ 0.22
SNX6-209ENST00000557265 RGL2O15211 777 aa16.43■□□□□ 0.22
SNX6-209ENST00000557265 GTF2E1P29083 439 aaPredicted RBP16.43■□□□□ 0.22
SNX6-209ENST00000557265 ALDH1B1P30837 517 aa16.43■□□□□ 0.22
SNX6-209ENST00000557265 IARSP41252 1262 aaKnown RBP16.43■□□□□ 0.22
SNX6-209ENST00000557265 CTCFP49711 727 aaPredicted RBP16.43■□□□□ 0.22
SNX6-209ENST00000557265 DCTN1Q14203 1278 aa16.43■□□□□ 0.22
SNX6-209ENST00000557265 HLFQ16534 295 aa16.43■□□□□ 0.22
SNX6-209ENST00000557265 MAP1SQ66K74 1059 aaPredicted RBP16.43■□□□□ 0.22
SNX6-209ENST00000557265 DICER1Q9UPY3 1922 aaKnown RBP16.43■□□□□ 0.22
SNX6-209ENST00000557265 RNF123Q5XPI4 1314 aa16.43■□□□□ 0.22
SNX6-209ENST00000557265 FZD9O00144 591 aa16.42■□□□□ 0.22
SNX6-209ENST00000557265 PNMA8AQ86V59 439 aaPredicted RBP16.42■□□□□ 0.22
SNX6-209ENST00000557265 CNTROBQ8N137 903 aa16.42■□□□□ 0.22
SNX6-209ENST00000557265 WBP1LQ9NX94 342 aa16.42■□□□□ 0.22
SNX6-209ENST00000557265 SIPA1L3O60292 1781 aaPredicted RBP16.41■□□□□ 0.22
SNX6-209ENST00000557265 TAF7Q15545 349 aaPredicted RBP16.4■□□□□ 0.22
SNX6-209ENST00000557265 DEFB115Q30KQ5 88 aa16.4■□□□□ 0.22
SNX6-209ENST00000557265 GPC2Q8N158 579 aa16.4■□□□□ 0.22
SNX6-209ENST00000557265 MIS18AQ9NYP9 233 aa16.4■□□□□ 0.22
SNX6-209ENST00000557265 HTATSF1O43719 755 aaKnown RBP16.39■□□□□ 0.21
SNX6-209ENST00000557265 LBX1P52954 281 aa16.39■□□□□ 0.21
SNX6-209ENST00000557265 NUTM1Q86Y26 1132 aa16.39■□□□□ 0.21
SNX6-209ENST00000557265 NGEFQ8N5V2 710 aa16.39■□□□□ 0.21
SNX6-209ENST00000557265 JDP2Q8WYK2 163 aa16.39■□□□□ 0.21
SNX6-209ENST00000557265 PSMD1Q99460 953 aa16.39■□□□□ 0.21
SNX6-209ENST00000557265 BCORQ6W2J9 1755 aa16.38■□□□□ 0.21
SNX6-209ENST00000557265 RASSF10A6NK89 507 aa16.38■□□□□ 0.21
SNX6-209ENST00000557265 CRY2Q49AN0 593 aa16.38■□□□□ 0.21
SNX6-209ENST00000557265 NYXQ9GZU5 481 aa16.38■□□□□ 0.21
SNX6-209ENST00000557265 GJA3Q9Y6H8 435 aa16.38■□□□□ 0.21
SNX6-209ENST00000557265 PPP2R1AP30153 589 aa16.37■□□□□ 0.21
SNX6-209ENST00000557265 ABT1Q9ULW3 272 aaKnown RBP16.37■□□□□ 0.21
SNX6-209ENST00000557265 SCN4AP35499 1836 aa16.36■□□□□ 0.21
SNX6-209ENST00000557265 ERVV-1B6SEH8 477 aa16.36■□□□□ 0.21
SNX6-209ENST00000557265 EIF6P56537 245 aaKnown RBP16.36■□□□□ 0.21
SNX6-209ENST00000557265 CC2D2BQ6DHV5 1058 aa16.36■□□□□ 0.21
SNX6-209ENST00000557265 WDR33Q9C0J8 1336 aaKnown RBP16.36■□□□□ 0.21
SNX6-209ENST00000557265 ABCC12Q96J65 1359 aa16.36■□□□□ 0.21
SNX6-209ENST00000557265 ARFGEF2Q9Y6D5 1785 aa16.36■□□□□ 0.21
SNX6-209ENST00000557265 HSPA8P11142 646 aaKnown RBP16.35■□□□□ 0.21
SNX6-209ENST00000557265 LMOD1P29536 600 aaPredicted RBP16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms