RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 IL2RAP01589 272 aa8.59□□□□□ -1.03
SCFD1-208ENST00000553278 GTF2F1P35269 517 aaKnown RBP eCLIP8.59□□□□□ -1.03
SCFD1-208ENST00000553278 NR5A1Q13285 461 aa8.59□□□□□ -1.03
SCFD1-208ENST00000553278 DGKZQ13574 1117 aa8.59□□□□□ -1.03
SCFD1-208ENST00000553278 FAM26DQ5JW98 314 aa8.59□□□□□ -1.03
SCFD1-208ENST00000553278 ETFBKMTQ8IXQ9 262 aa8.59□□□□□ -1.03
SCFD1-208ENST00000553278 ALDH16A1Q8IZ83 802 aa8.59□□□□□ -1.03
SCFD1-208ENST00000553278 ANKLE1Q8NAG6 615 aa8.59□□□□□ -1.03
SCFD1-208ENST00000553278 DHX38Q92620 1227 aaKnown RBP8.59□□□□□ -1.03
SCFD1-208ENST00000553278 CNKSR1Q969H4 720 aa8.59□□□□□ -1.03
SCFD1-208ENST00000553278 IFT43Q96FT9 208 aa8.59□□□□□ -1.03
SCFD1-208ENST00000553278 IQSEC3Q9UPP2 1182 aaPredicted RBP8.59□□□□□ -1.03
SCFD1-208ENST00000553278 SPG7Q9UQ90 795 aa8.59□□□□□ -1.03
SCFD1-208ENST00000553278 RPLP1P05386 114 aaKnown RBP8.58□□□□□ -1.04
SCFD1-208ENST00000553278 NOS2P35228 1153 aa8.58□□□□□ -1.04
SCFD1-208ENST00000553278 ADD1P35611 737 aaKnown RBP8.58□□□□□ -1.04
SCFD1-208ENST00000553278 GGCXP38435 758 aa8.58□□□□□ -1.04
SCFD1-208ENST00000553278 RPIAP49247 311 aa8.58□□□□□ -1.04
SCFD1-208ENST00000553278 RC3H1Q5TC82 1133 aaKnown RBP8.58□□□□□ -1.04
SCFD1-208ENST00000553278 GIMAP6Q6P9H5 292 aa8.58□□□□□ -1.04
SCFD1-208ENST00000553278 ZNF654Q8IZM8 581 aa8.58□□□□□ -1.04
SCFD1-208ENST00000553278 GMLQ99445 158 aa8.58□□□□□ -1.04
SCFD1-208ENST00000553278 ESYT1Q9BSJ8 1104 aa8.58□□□□□ -1.04
SCFD1-208ENST00000553278 LNPKQ9C0E8 428 aa8.58□□□□□ -1.04
SCFD1-208ENST00000553278 DNAJC25Q9H1X3 360 aa8.58□□□□□ -1.04
SCFD1-208ENST00000553278 FAM13BQ9NYF5 915 aa8.58□□□□□ -1.04
SCFD1-208ENST00000553278 RNF223E7ERA6 249 aa8.57□□□□□ -1.04
SCFD1-208ENST00000553278 CD2BP2O95400 341 aaKnown RBP8.57□□□□□ -1.04
SCFD1-208ENST00000553278 EIF4BP23588 611 aaKnown RBP8.57□□□□□ -1.04
SCFD1-208ENST00000553278 CABP1Q9NZU7 370 aa8.57□□□□□ -1.04
SCFD1-208ENST00000553278 INPP5FQ9Y2H2 1132 aa8.57□□□□□ -1.04
SCFD1-208ENST00000553278 HCN4Q9Y3Q4 1203 aa8.57□□□□□ -1.04
SCFD1-208ENST00000553278 USP3Q9Y6I4 520 aa8.57□□□□□ -1.04
SCFD1-208ENST00000553278 TLL2Q9Y6L7 1015 aa8.57□□□□□ -1.04
SCFD1-208ENST00000553278 EIF1AYO14602 144 aaKnown RBP8.56□□□□□ -1.04
SCFD1-208ENST00000553278 DNAJA1P31689 397 aaKnown RBP8.56□□□□□ -1.04
SCFD1-208ENST00000553278 TNNI2P48788 182 aa8.56□□□□□ -1.04
SCFD1-208ENST00000553278 ARID5AQ03989 594 aa8.56□□□□□ -1.04
SCFD1-208ENST00000553278 L3MBTL2Q969R5 705 aa8.56□□□□□ -1.04
SCFD1-208ENST00000553278 CFHR5Q9BXR6 569 aa8.56□□□□□ -1.04
SCFD1-208ENST00000553278 KLK14Q9P0G3 267 aa8.56□□□□□ -1.04
SCFD1-208ENST00000553278 ORC1Q13415 861 aa8.55□□□□□ -1.04
SCFD1-208ENST00000553278 C8orf34Q49A92 452 aa8.55□□□□□ -1.04
SCFD1-208ENST00000553278 PLA2G2CQ5R387 149 aa8.55□□□□□ -1.04
SCFD1-208ENST00000553278 SH3PXD2AQ5TCZ1 1133 aa8.55□□□□□ -1.04
SCFD1-208ENST00000553278 VPS37DQ86XT2 251 aa8.55□□□□□ -1.04
SCFD1-208ENST00000553278 PHACTR1Q9C0D0 580 aa8.55□□□□□ -1.04
SCFD1-208ENST00000553278 DDX41Q9UJV9 622 aaKnown RBP8.55□□□□□ -1.04
SCFD1-208ENST00000553278 TMA7Q9Y2S6 64 aaKnown RBP8.55□□□□□ -1.04
SCFD1-208ENST00000553278 HRH3Q9Y5N1 445 aa8.55□□□□□ -1.04
SCFD1-208ENST00000553278 ANKRD62A6NC57 917 aa8.54□□□□□ -1.04
SCFD1-208ENST00000553278 CPNE3O75131 537 aaKnown RBP8.54□□□□□ -1.04
SCFD1-208ENST00000553278 CTSHP09668 335 aa8.54□□□□□ -1.04
SCFD1-208ENST00000553278 GTF2E1P29083 439 aaPredicted RBP8.54□□□□□ -1.04
SCFD1-208ENST00000553278 CLN3Q13286 438 aa8.54□□□□□ -1.04
SCFD1-208ENST00000553278 SOGA3Q5TF21 947 aa8.54□□□□□ -1.04
SCFD1-208ENST00000553278 HS2ST1Q7LGA3 356 aa8.54□□□□□ -1.04
SCFD1-208ENST00000553278 USP48Q86UV5 1035 aa8.54□□□□□ -1.04
SCFD1-208ENST00000553278 TREML1Q86YW5 311 aa8.54□□□□□ -1.04
SCFD1-208ENST00000553278 GPR152Q8TDT2 470 aa8.54□□□□□ -1.04
SCFD1-208ENST00000553278 ZDHHC1Q8WTX9 485 aa8.54□□□□□ -1.04
SCFD1-208ENST00000553278 NUDT16Q96DE0 195 aaKnown RBP8.54□□□□□ -1.04
SCFD1-208ENST00000553278 GIPC1O14908 333 aa8.53□□□□□ -1.04
SCFD1-208ENST00000553278 ADH1AP07327 375 aa8.53□□□□□ -1.04
SCFD1-208ENST00000553278 C1orf53Q5VUE5 145 aa8.53□□□□□ -1.04
SCFD1-208ENST00000553278 ANKRD13AQ8IZ07 590 aa8.53□□□□□ -1.04
SCFD1-208ENST00000553278 NLRP3Q96P20 1036 aa8.53□□□□□ -1.04
SCFD1-208ENST00000553278 HIRIP3Q9BW71 556 aaPredicted RBP8.53□□□□□ -1.04
SCFD1-208ENST00000553278 CENPCQ03188 943 aa8.52□□□□□ -1.05
SCFD1-208ENST00000553278 KCNC4Q03721 635 aa8.52□□□□□ -1.05
SCFD1-208ENST00000553278 CCDC144BQ3MJ40 725 aa8.52□□□□□ -1.05
SCFD1-208ENST00000553278 ZNF394Q53GI3 561 aa8.52□□□□□ -1.05
SCFD1-208ENST00000553278 NIFKQ9BYG3 293 aaKnown RBP8.52□□□□□ -1.05
SCFD1-208ENST00000553278 SIAH2O43255 324 aa8.51□□□□□ -1.05
SCFD1-208ENST00000553278 NR3C2P08235 984 aa8.51□□□□□ -1.05
SCFD1-208ENST00000553278 PTPN12Q05209 780 aaKnown RBP8.51□□□□□ -1.05
SCFD1-208ENST00000553278 HIF1AQ16665 826 aa8.51□□□□□ -1.05
SCFD1-208ENST00000553278 IFFO2Q5TF58 517 aa8.51□□□□□ -1.05
SCFD1-208ENST00000553278 PPARGC1BQ86YN6 1023 aaKnown RBP8.51□□□□□ -1.05
SCFD1-208ENST00000553278 FHDC1Q9C0D6 1143 aaPredicted RBP8.51□□□□□ -1.05
SCFD1-208ENST00000553278 GGNBP2Q9H3C7 697 aa8.51□□□□□ -1.05
SCFD1-208ENST00000553278 PARP3Q9Y6F1 533 aa8.51□□□□□ -1.05
SCFD1-208ENST00000553278 OPLAHO14841 1288 aa8.5□□□□□ -1.05
SCFD1-208ENST00000553278 RBL2Q08999 1139 aa8.5□□□□□ -1.05
SCFD1-208ENST00000553278 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.5□□□□□ -1.05
SCFD1-208ENST00000553278 PMFBP1Q8TBY8 1022 aa8.5□□□□□ -1.05
SCFD1-208ENST00000553278 ZSCAN10Q96SZ4 725 aaPredicted RBP8.5□□□□□ -1.05
SCFD1-208ENST00000553278 C12orf49Q9H741 205 aa8.5□□□□□ -1.05
SCFD1-208ENST00000553278 GGT7Q9UJ14 662 aa8.5□□□□□ -1.05
SCFD1-208ENST00000553278 PCDHGB7Q9Y5F8 929 aa8.5□□□□□ -1.05
SCFD1-208ENST00000553278 TLDC2A0PJX2 215 aa8.49□□□□□ -1.05
SCFD1-208ENST00000553278 MEN1O00255 615 aa8.49□□□□□ -1.05
SCFD1-208ENST00000553278 RACK1P63244 317 aaKnown RBP8.49□□□□□ -1.05
SCFD1-208ENST00000553278 TMEM214Q6NUQ4 689 aaKnown RBP8.49□□□□□ -1.05
SCFD1-208ENST00000553278 ZNF295-AS1Q8N0V1 137 aa8.49□□□□□ -1.05
SCFD1-208ENST00000553278 STK10O94804 968 aaKnown RBP8.48□□□□□ -1.05
SCFD1-208ENST00000553278 MICAL2O94851 1124 aa8.48□□□□□ -1.05
SCFD1-208ENST00000553278 PTGIRP43119 386 aa8.48□□□□□ -1.05
SCFD1-208ENST00000553278 SRA1Q9HD15 236 aaKnown RBP8.48□□□□□ -1.05
SCFD1-208ENST00000553278 USP31Q70CQ4 1352 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms