RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 SULT6B1Q6IMI4 303 aa19.91■□□□□ 0.78
VPS29-209ENST00000551655 PAXIP1Q6ZW49 1069 aaPredicted RBP19.91■□□□□ 0.78
VPS29-209ENST00000551655 CYP4F22Q6NT55 531 aa19.9■□□□□ 0.78
VPS29-209ENST00000551655 OLFM4Q6UX06 510 aa19.9■□□□□ 0.78
VPS29-209ENST00000551655 CAPNS2Q96L46 248 aa19.9■□□□□ 0.78
VPS29-209ENST00000551655 ZNF277Q9NRM2 450 aaPredicted RBP19.9■□□□□ 0.78
VPS29-209ENST00000551655 UBR2Q8IWV8 1755 aa19.9■□□□□ 0.78
VPS29-209ENST00000551655 SRGNP10124 158 aa19.89■□□□□ 0.77
VPS29-209ENST00000551655 EIF5P55010 431 aaKnown RBP19.89■□□□□ 0.77
VPS29-209ENST00000551655 CNKSR1Q969H4 720 aa19.89■□□□□ 0.77
VPS29-209ENST00000551655 TBC1D2BQ9UPU7 963 aa19.89■□□□□ 0.77
VPS29-209ENST00000551655 STYK1Q6J9G0 422 aa19.88■□□□□ 0.77
VPS29-209ENST00000551655 MCOLN1Q9GZU1 580 aa19.88■□□□□ 0.77
VPS29-209ENST00000551655 PDZRN3Q9UPQ7 1066 aa19.88■□□□□ 0.77
VPS29-209ENST00000551655 ZNF330Q9Y3S2 320 aaPredicted RBP19.88■□□□□ 0.77
VPS29-209ENST00000551655 AKAP4Q5JQC9 854 aa19.87■□□□□ 0.77
VPS29-209ENST00000551655 DDX21Q9NR30 783 aaKnown RBP eCLIP19.87■□□□□ 0.77
VPS29-209ENST00000551655 CASP8AP2Q9UKL3 1982 aa19.86■□□□□ 0.77
VPS29-209ENST00000551655 RNMTO43148 476 aaKnown RBP19.86■□□□□ 0.77
VPS29-209ENST00000551655 AOC2O75106 756 aa19.86■□□□□ 0.77
VPS29-209ENST00000551655 CNBD1Q8NA66 436 aa19.86■□□□□ 0.77
VPS29-209ENST00000551655 C7orf43Q8WVR3 580 aa19.86■□□□□ 0.77
VPS29-209ENST00000551655 BEGAINQ9BUH8 593 aa19.86■□□□□ 0.77
VPS29-209ENST00000551655 NPHP1O15259 732 aa19.85■□□□□ 0.77
VPS29-209ENST00000551655 CCDC93Q567U6 631 aa19.85■□□□□ 0.77
VPS29-209ENST00000551655 MASTLQ96GX5 879 aa19.85■□□□□ 0.77
VPS29-209ENST00000551655 GPR101Q96P66 508 aaPredicted RBP19.85■□□□□ 0.77
VPS29-209ENST00000551655 PDE4DIPQ5VU43 2346 aa19.85■□□□□ 0.77
VPS29-209ENST00000551655 FKBP4Q02790 459 aaKnown RBP eCLIP19.84■□□□□ 0.77
VPS29-209ENST00000551655 SOGA3Q5TF21 947 aa19.84■□□□□ 0.77
VPS29-209ENST00000551655 PNMA8AQ86V59 439 aaPredicted RBP19.84■□□□□ 0.77
VPS29-209ENST00000551655 POLR3GLQ9BT43 218 aa19.84■□□□□ 0.77
VPS29-209ENST00000551655 A0A087WZG4 1122 aa19.83■□□□□ 0.77
VPS29-209ENST00000551655 VSIG10Q8N0Z9 540 aa19.83■□□□□ 0.77
VPS29-209ENST00000551655 TRPM7Q96QT4 1865 aa19.82■□□□□ 0.76
VPS29-209ENST00000551655 TRAF5O00463 557 aa19.82■□□□□ 0.76
VPS29-209ENST00000551655 ST5P78524 1137 aa19.82■□□□□ 0.76
VPS29-209ENST00000551655 BCORQ6W2J9 1755 aa19.82■□□□□ 0.76
VPS29-209ENST00000551655 COL4A5P29400 1685 aa19.81■□□□□ 0.76
VPS29-209ENST00000551655 CST9Q5W186 159 aa19.81■□□□□ 0.76
VPS29-209ENST00000551655 SETDB2Q96T68 719 aa19.81■□□□□ 0.76
VPS29-209ENST00000551655 CAMTA2O94983 1202 aa19.8■□□□□ 0.76
VPS29-209ENST00000551655 STARD3NLO95772 234 aa19.8■□□□□ 0.76
VPS29-209ENST00000551655 ECE1P42892 770 aa19.8■□□□□ 0.76
VPS29-209ENST00000551655 FZD9O00144 591 aa19.79■□□□□ 0.76
VPS29-209ENST00000551655 IL13P35225 146 aa19.79■□□□□ 0.76
VPS29-209ENST00000551655 DGKZQ13574 1117 aa19.79■□□□□ 0.76
VPS29-209ENST00000551655 GJA3Q9Y6H8 435 aa19.79■□□□□ 0.76
VPS29-209ENST00000551655 IARSP41252 1262 aaKnown RBP19.78■□□□□ 0.76
VPS29-209ENST00000551655 GPC2Q8N158 579 aa19.78■□□□□ 0.76
VPS29-209ENST00000551655 A1BGP04217 495 aa19.77■□□□□ 0.76
VPS29-209ENST00000551655 SYNE4Q8N205 404 aa19.77■□□□□ 0.76
VPS29-209ENST00000551655 ZNF496Q96IT1 587 aaPredicted RBP19.77■□□□□ 0.76
VPS29-209ENST00000551655 TLL2Q9Y6L7 1015 aa19.77■□□□□ 0.76
VPS29-209ENST00000551655 HMOX1P09601 288 aa19.76■□□□□ 0.75
VPS29-209ENST00000551655 EPS15P42566 896 aa19.76■□□□□ 0.75
VPS29-209ENST00000551655 MTHFSDQ2M296 383 aaKnown RBP19.76■□□□□ 0.75
VPS29-209ENST00000551655 HEG1Q9ULI3 1381 aa19.75■□□□□ 0.75
VPS29-209ENST00000551655 NPR1P16066 1061 aa19.75■□□□□ 0.75
VPS29-209ENST00000551655 PIP4K2AP48426 406 aaPredicted RBP19.75■□□□□ 0.75
VPS29-209ENST00000551655 SOX10P56693 466 aa19.75■□□□□ 0.75
VPS29-209ENST00000551655 TTC5Q8N0Z6 440 aa19.75■□□□□ 0.75
VPS29-209ENST00000551655 IL6STP40189 918 aaPredicted RBP19.74■□□□□ 0.75
VPS29-209ENST00000551655 SCNN1DP51172 638 aa19.74■□□□□ 0.75
VPS29-209ENST00000551655 SLC51AQ86UW1 340 aa19.74■□□□□ 0.75
VPS29-209ENST00000551655 NBPF5PQ86XG9 351 aaPredicted RBP19.74■□□□□ 0.75
VPS29-209ENST00000551655 MAP2K2P36507 400 aa19.73■□□□□ 0.75
VPS29-209ENST00000551655 RTKN2Q8IZC4 609 aa19.73■□□□□ 0.75
VPS29-209ENST00000551655 SNED1Q8TER0 1413 aa19.73■□□□□ 0.75
VPS29-209ENST00000551655 FAM177BA6PVY3 158 aa19.72■□□□□ 0.75
VPS29-209ENST00000551655 LMOD1P29536 600 aaPredicted RBP19.72■□□□□ 0.75
VPS29-209ENST00000551655 MORC1Q86VD1 984 aa19.72■□□□□ 0.75
VPS29-209ENST00000551655 DZIP3Q86Y13 1208 aaKnown RBP19.72■□□□□ 0.75
VPS29-209ENST00000551655 SIPA1L3O60292 1781 aaPredicted RBP19.71■□□□□ 0.75
VPS29-209ENST00000551655 CIAPIN1Q6FI81 312 aa19.71■□□□□ 0.75
VPS29-209ENST00000551655 ZIC5Q96T25 663 aa19.71■□□□□ 0.75
VPS29-209ENST00000551655 PANK3Q9H999 370 aa19.71■□□□□ 0.75
VPS29-209ENST00000551655 SAPCD2Q86UD0 394 aa19.7■□□□□ 0.74
VPS29-209ENST00000551655 JDP2Q8WYK2 163 aa19.7■□□□□ 0.74
VPS29-209ENST00000551655 KLRG2A4D1S0 409 aaPredicted RBP19.69■□□□□ 0.74
VPS29-209ENST00000551655 EIF6P56537 245 aaKnown RBP19.69■□□□□ 0.74
VPS29-209ENST00000551655 ZNF790Q6PG37 636 aa19.69■□□□□ 0.74
VPS29-209ENST00000551655 CA12O43570 354 aa19.68■□□□□ 0.74
VPS29-209ENST00000551655 CELF2O95319 508 aaKnown RBP19.68■□□□□ 0.74
VPS29-209ENST00000551655 BRPF1P55201 1214 aaPredicted RBP19.68■□□□□ 0.74
VPS29-209ENST00000551655 KCNQ3O43525 872 aa19.67■□□□□ 0.74
VPS29-209ENST00000551655 NPM2Q86SE8 214 aaKnown RBP19.67■□□□□ 0.74
VPS29-209ENST00000551655 GLIS2Q9BZE0 524 aaPredicted RBP19.67■□□□□ 0.74
VPS29-209ENST00000551655 USP50Q70EL3 339 aaPredicted RBP19.66■□□□□ 0.74
VPS29-209ENST00000551655 TEX13AQ9BXU3 409 aaPredicted RBP19.66■□□□□ 0.74
VPS29-209ENST00000551655 ZNF408Q9H9D4 720 aa19.66■□□□□ 0.74
VPS29-209ENST00000551655 PRAMEF22A3QJZ6 481 aa19.65■□□□□ 0.74
VPS29-209ENST00000551655 PRPF38BQ5VTL8 546 aaKnown RBP19.65■□□□□ 0.74
VPS29-209ENST00000551655 IL17REQ8NFR9 667 aa19.65■□□□□ 0.74
VPS29-209ENST00000551655 PSMD1Q99460 953 aa19.65■□□□□ 0.74
VPS29-209ENST00000551655 NIP7Q9Y221 180 aaKnown RBP eCLIP19.64■□□□□ 0.73
VPS29-209ENST00000551655 ABCC12Q96J65 1359 aa19.63■□□□□ 0.73
VPS29-209ENST00000551655 TEFQ10587 303 aa19.63■□□□□ 0.73
VPS29-209ENST00000551655 LARGE2Q8N3Y3 721 aa19.63■□□□□ 0.73
VPS29-209ENST00000551655 FMNL2Q96PY5 1086 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms