RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 USPL1Q5W0Q7 1092 aa27.48■■□□□ 1.99
NEK3-202ENST00000550841 XAGE3Q8WTP9 111 aa27.48■■□□□ 1.99
NEK3-202ENST00000550841 SRP68Q9UHB9 627 aaKnown RBP27.48■■□□□ 1.99
NEK3-202ENST00000550841 ZNF652Q9Y2D9 606 aa27.48■■□□□ 1.99
NEK3-202ENST00000550841 CACNA1FO60840 1977 aa27.48■■□□□ 1.99
NEK3-202ENST00000550841 AIMP1Q12904 312 aaKnown RBP27.47■■□□□ 1.99
NEK3-202ENST00000550841 ALDH1L2Q3SY69 923 aa27.47■■□□□ 1.99
NEK3-202ENST00000550841 CLEC4GQ6UXB4 293 aa27.47■■□□□ 1.99
NEK3-202ENST00000550841 TCERG1O14776 1098 aaKnown RBP27.46■■□□□ 1.99
NEK3-202ENST00000550841 CAMTA2O94983 1202 aa27.46■■□□□ 1.99
NEK3-202ENST00000550841 GYS1P13807 737 aa27.46■■□□□ 1.99
NEK3-202ENST00000550841 MAP3K15Q6ZN16 1313 aa27.45■■□□□ 1.99
NEK3-202ENST00000550841 DDX58O95786 925 aaKnown RBP27.45■■□□□ 1.98
NEK3-202ENST00000550841 TTLL7Q6ZT98 887 aa27.45■■□□□ 1.98
NEK3-202ENST00000550841 ANKRD13DQ6ZTN6 518 aa27.44■■□□□ 1.98
NEK3-202ENST00000550841 PHAXQ9H814 394 aaKnown RBP27.43■■□□□ 1.98
NEK3-202ENST00000550841 C4AP0C0L4 1744 aa27.43■■□□□ 1.98
NEK3-202ENST00000550841 POLD1P28340 1107 aa27.42■■□□□ 1.98
NEK3-202ENST00000550841 PLBD2Q8NHP8 589 aa27.42■■□□□ 1.98
NEK3-202ENST00000550841 FKBP8Q14318 412 aa27.41■■□□□ 1.98
NEK3-202ENST00000550841 SSH1Q8WYL5 1049 aa27.41■■□□□ 1.98
NEK3-202ENST00000550841 BCL2L12Q9HB09 334 aa27.41■■□□□ 1.98
NEK3-202ENST00000550841 MSL1Q68DK7 614 aa27.4■■□□□ 1.98
NEK3-202ENST00000550841 ZBTB3Q9H5J0 574 aa27.4■■□□□ 1.98
NEK3-202ENST00000550841 RARSP54136 660 aaKnown RBP27.39■■□□□ 1.98
NEK3-202ENST00000550841 FLIIQ13045 1269 aa27.39■■□□□ 1.98
NEK3-202ENST00000550841 HSP90AB3PQ58FF7 597 aa27.39■■□□□ 1.98
NEK3-202ENST00000550841 GIGYF2Q6Y7W6 1299 aaKnown RBP27.39■■□□□ 1.98
NEK3-202ENST00000550841 RIC3Q7Z5B4 369 aa27.39■■□□□ 1.98
NEK3-202ENST00000550841 MRPL50Q8N5N7 158 aaKnown RBP27.39■■□□□ 1.98
NEK3-202ENST00000550841 SMC4Q9NTJ3 1288 aa27.39■■□□□ 1.98
NEK3-202ENST00000550841 TM4SF1P30408 202 aa27.37■■□□□ 1.97
NEK3-202ENST00000550841 HLFQ16534 295 aa27.37■■□□□ 1.97
NEK3-202ENST00000550841 KSR2Q6VAB6 950 aa27.37■■□□□ 1.97
NEK3-202ENST00000550841 G2E3Q7L622 706 aa27.37■■□□□ 1.97
NEK3-202ENST00000550841 SETDB2Q96T68 719 aa27.37■■□□□ 1.97
NEK3-202ENST00000550841 BRPF1P55201 1214 aaPredicted RBP27.36■■□□□ 1.97
NEK3-202ENST00000550841 FKBP5Q13451 457 aaPredicted RBP27.36■■□□□ 1.97
NEK3-202ENST00000550841 KLHL34Q8N239 644 aa27.36■■□□□ 1.97
NEK3-202ENST00000550841 PARP3Q9Y6F1 533 aa27.36■■□□□ 1.97
NEK3-202ENST00000550841 MMP10P09238 476 aa27.35■■□□□ 1.97
NEK3-202ENST00000550841 TBC1D9BQ66K14 1250 aa27.35■■□□□ 1.97
NEK3-202ENST00000550841 TCIRG1Q13488 830 aa27.34■■□□□ 1.97
NEK3-202ENST00000550841 NFIXQ14938 502 aa27.34■■□□□ 1.97
NEK3-202ENST00000550841 SCN7AQ01118 1682 aa27.33■■□□□ 1.97
NEK3-202ENST00000550841 BCORQ6W2J9 1755 aa27.33■■□□□ 1.97
NEK3-202ENST00000550841 PI4KAP2A4QPH2 592 aa27.33■■□□□ 1.97
NEK3-202ENST00000550841 BICDL1Q6ZP65 573 aa27.33■■□□□ 1.97
NEK3-202ENST00000550841 PI4KAP1Q8N8J0 262 aa27.33■■□□□ 1.97
NEK3-202ENST00000550841 BCL2L13Q9BXK5 485 aa27.33■■□□□ 1.97
NEK3-202ENST00000550841 NIP7Q9Y221 180 aaKnown RBP eCLIP27.33■■□□□ 1.97
NEK3-202ENST00000550841 PTPRCP08575 1304 aa27.33■■□□□ 1.97
NEK3-202ENST00000550841 GPR162Q16538 588 aa27.32■■□□□ 1.96
NEK3-202ENST00000550841 ZNF34Q8IZ26 560 aa27.31■■□□□ 1.96
NEK3-202ENST00000550841 MAP3K2Q9Y2U5 619 aa27.31■■□□□ 1.96
NEK3-202ENST00000550841 NUP98P52948 1817 aa27.31■■□□□ 1.96
NEK3-202ENST00000550841 COL24A1Q17RW2 1714 aa27.3■■□□□ 1.96
NEK3-202ENST00000550841 IPO8O15397 1037 aaKnown RBP27.3■■□□□ 1.96
NEK3-202ENST00000550841 NEXNQ0ZGT2 675 aa27.3■■□□□ 1.96
NEK3-202ENST00000550841 PARP10Q53GL7 1025 aa27.3■■□□□ 1.96
NEK3-202ENST00000550841 METTL22Q9BUU2 404 aaPredicted RBP27.3■■□□□ 1.96
NEK3-202ENST00000550841 ATP10DQ9P241 1426 aa27.3■■□□□ 1.96
NEK3-202ENST00000550841 POLRMTO00411 1230 aaKnown RBP27.29■■□□□ 1.96
NEK3-202ENST00000550841 KIF16BQ96L93 1317 aa27.29■■□□□ 1.96
NEK3-202ENST00000550841 CARMIL3Q8ND23 1372 aa27.29■■□□□ 1.96
NEK3-202ENST00000550841 SERPINB2P05120 415 aa27.28■■□□□ 1.96
NEK3-202ENST00000550841 TRIM28Q13263 835 aaKnown RBP27.28■■□□□ 1.96
NEK3-202ENST00000550841 ZNF784Q8NCA9 323 aaPredicted RBP27.28■■□□□ 1.96
NEK3-202ENST00000550841 DNAAF4Q8WXU2 420 aa27.28■■□□□ 1.96
NEK3-202ENST00000550841 DDR1Q08345 913 aa27.27■■□□□ 1.96
NEK3-202ENST00000550841 TPTE2Q6XPS3 522 aa27.27■■□□□ 1.96
NEK3-202ENST00000550841 PPP1R42Q7Z4L9 355 aa27.27■■□□□ 1.96
NEK3-202ENST00000550841 ARHGAP45Q92619 1136 aa27.27■■□□□ 1.96
NEK3-202ENST00000550841 NYXQ9GZU5 481 aa27.27■■□□□ 1.96
NEK3-202ENST00000550841 RCAN3Q9UKA8 241 aa27.27■■□□□ 1.96
NEK3-202ENST00000550841 NOB1Q9ULX3 412 aaKnown RBP27.27■■□□□ 1.96
NEK3-202ENST00000550841 ADCY9O60503 1353 aa27.26■■□□□ 1.95
NEK3-202ENST00000550841 BCAR3O75815 825 aa27.26■■□□□ 1.95
NEK3-202ENST00000550841 GPTP24298 496 aa27.26■■□□□ 1.95
NEK3-202ENST00000550841 MYD88Q99836 296 aa27.26■■□□□ 1.95
NEK3-202ENST00000550841 ISCA1Q9BUE6 129 aa27.26■■□□□ 1.95
NEK3-202ENST00000550841 API5Q9BZZ5 524 aaKnown RBP27.26■■□□□ 1.95
NEK3-202ENST00000550841 NPHP1O15259 732 aa27.25■■□□□ 1.95
NEK3-202ENST00000550841 NBPF5PQ86XG9 351 aaPredicted RBP27.25■■□□□ 1.95
NEK3-202ENST00000550841 PELP1Q8IZL8 1130 aaKnown RBP27.25■■□□□ 1.95
NEK3-202ENST00000550841 ATP5J2-PTCD1G3V325 749 aa27.23■■□□□ 1.95
NEK3-202ENST00000550841 GTF2E1P29083 439 aaPredicted RBP27.23■■□□□ 1.95
NEK3-202ENST00000550841 NLRP10Q86W26 655 aa27.23■■□□□ 1.95
NEK3-202ENST00000550841 CCDC191Q8NCU4 936 aa27.23■■□□□ 1.95
NEK3-202ENST00000550841 LINS1Q8NG48 757 aa27.22■■□□□ 1.95
NEK3-202ENST00000550841 FRAT1Q92837 279 aaPredicted RBP27.22■■□□□ 1.95
NEK3-202ENST00000550841 UTP14AQ9BVJ6 771 aaKnown RBP27.22■■□□□ 1.95
NEK3-202ENST00000550841 ARFGEF2Q9Y6D5 1785 aa27.22■■□□□ 1.95
NEK3-202ENST00000550841 F6X3S4 739 aa27.21■■□□□ 1.95
NEK3-202ENST00000550841 SUSD4Q5VX71 490 aa27.21■■□□□ 1.95
NEK3-202ENST00000550841 CNBD1Q8NA66 436 aa27.21■■□□□ 1.95
NEK3-202ENST00000550841 RNF123Q5XPI4 1314 aa27.2■■□□□ 1.95
NEK3-202ENST00000550841 UBN2Q6ZU65 1347 aa27.2■■□□□ 1.95
NEK3-202ENST00000550841 FAM177BA6PVY3 158 aa27.2■■□□□ 1.94
NEK3-202ENST00000550841 ST5P78524 1137 aa27.2■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms