RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 LMNB1P20700 586 aa23.05■■□□□ 1.28
CHMP1A-205ENST00000548650 CLEC4GQ6UXB4 293 aa23.05■■□□□ 1.28
CHMP1A-205ENST00000548650 THUMPD2Q9BTF0 503 aaKnown RBP23.05■■□□□ 1.28
CHMP1A-205ENST00000548650 NUP98P52948 1817 aa23.05■■□□□ 1.28
CHMP1A-205ENST00000548650 WDR90Q96KV7 1748 aa23.05■■□□□ 1.28
CHMP1A-205ENST00000548650 RGL2O15211 777 aa23.04■■□□□ 1.28
CHMP1A-205ENST00000548650 ST5P78524 1137 aa23.04■■□□□ 1.28
CHMP1A-205ENST00000548650 ZNF622Q969S3 477 aaKnown RBP eCLIP23.04■■□□□ 1.28
CHMP1A-205ENST00000548650 ZNF652Q9Y2D9 606 aa23.04■■□□□ 1.28
CHMP1A-205ENST00000548650 MAPK8IP3Q9UPT6 1336 aa23.04■■□□□ 1.28
CHMP1A-205ENST00000548650 PNISRQ8TF01 805 aaKnown RBP23.03■■□□□ 1.28
CHMP1A-205ENST00000548650 RALBP1Q15311 655 aa23.02■■□□□ 1.28
CHMP1A-205ENST00000548650 NPHP1O15259 732 aa23.01■■□□□ 1.27
CHMP1A-205ENST00000548650 SRGNP10124 158 aa23.01■■□□□ 1.27
CHMP1A-205ENST00000548650 NBPF5PQ86XG9 351 aaPredicted RBP23.01■■□□□ 1.27
CHMP1A-205ENST00000548650 RBM46Q8TBY0 533 aaKnown RBP23.01■■□□□ 1.27
CHMP1A-205ENST00000548650 EIF4A1P60842 406 aaKnown RBP23■■□□□ 1.27
CHMP1A-205ENST00000548650 STYK1Q6J9G0 422 aa23■■□□□ 1.27
CHMP1A-205ENST00000548650 C21orf2O43822 256 aa22.99■■□□□ 1.27
CHMP1A-205ENST00000548650 PNNQ9H307 717 aaKnown RBP22.99■■□□□ 1.27
CHMP1A-205ENST00000548650 PRPF40BQ6NWY9 871 aaKnown RBP22.98■■□□□ 1.27
CHMP1A-205ENST00000548650 CNKSR1Q969H4 720 aa22.98■■□□□ 1.27
CHMP1A-205ENST00000548650 ZNF219Q9P2Y4 722 aaPredicted RBP22.98■■□□□ 1.27
CHMP1A-205ENST00000548650 NIP7Q9Y221 180 aaKnown RBP eCLIP22.98■■□□□ 1.27
CHMP1A-205ENST00000548650 LTBP3Q9NS15 1303 aa22.98■■□□□ 1.27
CHMP1A-205ENST00000548650 APLP1P51693 650 aa22.97■■□□□ 1.27
CHMP1A-205ENST00000548650 HLFQ16534 295 aa22.97■■□□□ 1.27
CHMP1A-205ENST00000548650 MASTLQ96GX5 879 aa22.97■■□□□ 1.27
CHMP1A-205ENST00000548650 RRAGCQ9HB90 399 aa22.97■■□□□ 1.27
CHMP1A-205ENST00000548650 C16orf71Q8IYS4 520 aaPredicted RBP22.96■■□□□ 1.27
CHMP1A-205ENST00000548650 MYBBP1AQ9BQG0 1328 aaKnown RBP22.96■■□□□ 1.27
CHMP1A-205ENST00000548650 GLTPD2A6NH11 291 aa22.95■■□□□ 1.26
CHMP1A-205ENST00000548650 ABCC12Q96J65 1359 aa22.95■■□□□ 1.26
CHMP1A-205ENST00000548650 KLRG2A4D1S0 409 aaPredicted RBP22.94■■□□□ 1.26
CHMP1A-205ENST00000548650 DDX10Q13206 875 aaKnown RBP22.94■■□□□ 1.26
CHMP1A-205ENST00000548650 TAOK3Q9H2K8 898 aa22.94■■□□□ 1.26
CHMP1A-205ENST00000548650 MAP3K15Q6ZN16 1313 aa22.93■■□□□ 1.26
CHMP1A-205ENST00000548650 FSTL1Q12841 308 aa22.93■■□□□ 1.26
CHMP1A-205ENST00000548650 TPTE2Q6XPS3 522 aa22.93■■□□□ 1.26
CHMP1A-205ENST00000548650 ANKRD36CQ5JPF3 1778 aa22.93■■□□□ 1.26
CHMP1A-205ENST00000548650 IBTKQ9P2D0 1353 aaPredicted RBP22.92■■□□□ 1.26
CHMP1A-205ENST00000548650 ERBB4Q15303 1308 aa22.92■■□□□ 1.26
CHMP1A-205ENST00000548650 ERVV-1B6SEH8 477 aa22.92■■□□□ 1.26
CHMP1A-205ENST00000548650 RIPK4P57078 832 aa22.92■■□□□ 1.26
CHMP1A-205ENST00000548650 SOGA3Q5TF21 947 aa22.92■■□□□ 1.26
CHMP1A-205ENST00000548650 TTLL7Q6ZT98 887 aa22.92■■□□□ 1.26
CHMP1A-205ENST00000548650 NGEFQ8N5V2 710 aa22.92■■□□□ 1.26
CHMP1A-205ENST00000548650 TSPYL4Q9UJ04 414 aa22.92■■□□□ 1.26
CHMP1A-205ENST00000548650 RIC1Q4ADV7 1423 aa22.91■■□□□ 1.26
CHMP1A-205ENST00000548650 FAM177BA6PVY3 158 aa22.91■■□□□ 1.26
CHMP1A-205ENST00000548650 NPR1P16066 1061 aa22.91■■□□□ 1.26
CHMP1A-205ENST00000548650 TMPOP42166 694 aaKnown RBP22.91■■□□□ 1.26
CHMP1A-205ENST00000548650 C7orf43Q8WVR3 580 aa22.91■■□□□ 1.26
CHMP1A-205ENST00000548650 RRP7AQ9Y3A4 280 aaKnown RBP22.91■■□□□ 1.26
CHMP1A-205ENST00000548650 MYL6BP14649 208 aa22.9■■□□□ 1.26
CHMP1A-205ENST00000548650 ERFEQ4G0M1 354 aa22.9■■□□□ 1.26
CHMP1A-205ENST00000548650 KIF6Q6ZMV9 814 aa22.9■■□□□ 1.26
CHMP1A-205ENST00000548650 UBN2Q6ZU65 1347 aa22.89■■□□□ 1.26
CHMP1A-205ENST00000548650 LMOD3Q0VAK6 560 aa22.89■■□□□ 1.25
CHMP1A-205ENST00000548650 VEGFAP15692 232 aaPredicted RBP22.88■■□□□ 1.25
CHMP1A-205ENST00000548650 CCDC93Q567U6 631 aa22.88■■□□□ 1.25
CHMP1A-205ENST00000548650 LRP10Q7Z4F1 713 aa22.88■■□□□ 1.25
CHMP1A-205ENST00000548650 SMC1BQ8NDV3 1235 aa22.88■■□□□ 1.25
CHMP1A-205ENST00000548650 ZBTB3Q9H5J0 574 aa22.88■■□□□ 1.25
CHMP1A-205ENST00000548650 SNED1Q8TER0 1413 aa22.88■■□□□ 1.25
CHMP1A-205ENST00000548650 CRY2Q49AN0 593 aa22.87■■□□□ 1.25
CHMP1A-205ENST00000548650 DNAJC5GQ8N7S2 189 aa22.87■■□□□ 1.25
CHMP1A-205ENST00000548650 BABAM1Q9NWV8 329 aa22.87■■□□□ 1.25
CHMP1A-205ENST00000548650 POTECB2RU33 542 aa22.86■■□□□ 1.25
CHMP1A-205ENST00000548650 NUTM1Q86Y26 1132 aa22.86■■□□□ 1.25
CHMP1A-205ENST00000548650 CCDC146Q8IYE0 955 aa22.86■■□□□ 1.25
CHMP1A-205ENST00000548650 NYXQ9GZU5 481 aa22.86■■□□□ 1.25
CHMP1A-205ENST00000548650 GPTP24298 496 aa22.85■■□□□ 1.25
CHMP1A-205ENST00000548650 PDIA6Q15084 440 aa22.85■■□□□ 1.25
CHMP1A-205ENST00000548650 OLFM4Q6UX06 510 aa22.85■■□□□ 1.25
CHMP1A-205ENST00000548650 GTF2E1P29083 439 aaPredicted RBP22.84■■□□□ 1.25
CHMP1A-205ENST00000548650 HTRA3P83110 453 aa22.84■■□□□ 1.25
CHMP1A-205ENST00000548650 PROSER3Q2NL68 480 aa22.84■■□□□ 1.25
CHMP1A-205ENST00000548650 DPY19L2Q6NUT2 758 aa22.84■■□□□ 1.25
CHMP1A-205ENST00000548650 LAMB2P55268 1798 aa22.84■■□□□ 1.25
CHMP1A-205ENST00000548650 SCN4AP35499 1836 aa22.83■■□□□ 1.25
CHMP1A-205ENST00000548650 FKBP4Q02790 459 aaKnown RBP eCLIP22.83■■□□□ 1.25
CHMP1A-205ENST00000548650 GIGYF2Q6Y7W6 1299 aaKnown RBP22.83■■□□□ 1.25
CHMP1A-205ENST00000548650 ZNF34Q8IZ26 560 aa22.83■■□□□ 1.25
CHMP1A-205ENST00000548650 NTSR2O95665 410 aa22.82■■□□□ 1.24
CHMP1A-205ENST00000548650 WDR43Q15061 677 aaKnown RBP eCLIP22.82■■□□□ 1.24
CHMP1A-205ENST00000548650 SUSD4Q5VX71 490 aa22.82■■□□□ 1.24
CHMP1A-205ENST00000548650 RUNDC1Q96C34 613 aa22.82■■□□□ 1.24
CHMP1A-205ENST00000548650 ANXA1P04083 346 aa22.81■■□□□ 1.24
CHMP1A-205ENST00000548650 EIF2S2P20042 333 aaKnown RBP22.81■■□□□ 1.24
CHMP1A-205ENST00000548650 ALDH1B1P30837 517 aa22.81■■□□□ 1.24
CHMP1A-205ENST00000548650 TRIM35Q9UPQ4 493 aa22.81■■□□□ 1.24
CHMP1A-205ENST00000548650 DDNO94850 711 aaPredicted RBP22.8■■□□□ 1.24
CHMP1A-205ENST00000548650 NEUROD2Q15784 382 aa22.8■■□□□ 1.24
CHMP1A-205ENST00000548650 ZNF277Q9NRM2 450 aaPredicted RBP22.8■■□□□ 1.24
CHMP1A-205ENST00000548650 CHL1O00533 1208 aa22.79■■□□□ 1.24
CHMP1A-205ENST00000548650 KRT24Q2M2I5 525 aa22.79■■□□□ 1.24
CHMP1A-205ENST00000548650 RTKN2Q8IZC4 609 aa22.79■■□□□ 1.24
CHMP1A-205ENST00000548650 PRKRIP1Q9H875 184 aaPredicted RBP22.79■■□□□ 1.24
CHMP1A-205ENST00000548650 COL4A5P29400 1685 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms