RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 ST5P78524 1137 aa17.62■□□□□ 0.41
CPSF6-204ENST00000547486 NIP7Q9Y221 180 aaKnown RBP eCLIP17.62■□□□□ 0.41
CPSF6-204ENST00000547486 ZNF652Q9Y2D9 606 aa17.62■□□□□ 0.41
CPSF6-204ENST00000547486 ANKRD31Q8N7Z5 1873 aa17.61■□□□□ 0.41
CPSF6-204ENST00000547486 TMPOP42166 694 aaKnown RBP17.61■□□□□ 0.41
CPSF6-204ENST00000547486 RRAGCQ9HB90 399 aa17.61■□□□□ 0.41
CPSF6-204ENST00000547486 RRP7AQ9Y3A4 280 aaKnown RBP17.61■□□□□ 0.41
CPSF6-204ENST00000547486 FAM177BA6PVY3 158 aa17.6■□□□□ 0.41
CPSF6-204ENST00000547486 RGL2O15211 777 aa17.6■□□□□ 0.41
CPSF6-204ENST00000547486 STYK1Q6J9G0 422 aa17.6■□□□□ 0.41
CPSF6-204ENST00000547486 TTLL7Q6ZT98 887 aa17.6■□□□□ 0.41
CPSF6-204ENST00000547486 MYBBP1AQ9BQG0 1328 aaKnown RBP17.6■□□□□ 0.41
CPSF6-204ENST00000547486 DLG5Q8TDM6 1919 aa17.59■□□□□ 0.41
CPSF6-204ENST00000547486 DLEC1Q9Y238 1755 aa17.59■□□□□ 0.41
CPSF6-204ENST00000547486 KDM2BQ8NHM5 1336 aa17.59■□□□□ 0.41
CPSF6-204ENST00000547486 MYL6BP14649 208 aa17.59■□□□□ 0.41
CPSF6-204ENST00000547486 TPTE2Q6XPS3 522 aa17.59■□□□□ 0.41
CPSF6-204ENST00000547486 CCDC146Q8IYE0 955 aa17.59■□□□□ 0.41
CPSF6-204ENST00000547486 CNKSR1Q969H4 720 aa17.59■□□□□ 0.41
CPSF6-204ENST00000547486 MASTLQ96GX5 879 aa17.59■□□□□ 0.41
CPSF6-204ENST00000547486 TSPYL4Q9UJ04 414 aa17.59■□□□□ 0.41
CPSF6-204ENST00000547486 KLRG2A4D1S0 409 aaPredicted RBP17.58■□□□□ 0.4
CPSF6-204ENST00000547486 PRPF40BQ6NWY9 871 aaKnown RBP17.58■□□□□ 0.4
CPSF6-204ENST00000547486 SBF1O95248 1867 aa17.58■□□□□ 0.4
CPSF6-204ENST00000547486 BCORQ6W2J9 1755 aa17.58■□□□□ 0.4
CPSF6-204ENST00000547486 ERVV-1B6SEH8 477 aa17.57■□□□□ 0.4
CPSF6-204ENST00000547486 C7orf43Q8WVR3 580 aa17.57■□□□□ 0.4
CPSF6-204ENST00000547486 KDM3BQ7LBC6 1761 aa17.56■□□□□ 0.4
CPSF6-204ENST00000547486 COL11A2P13942 1736 aaPredicted RBP17.56■□□□□ 0.4
CPSF6-204ENST00000547486 MAP3K15Q6ZN16 1313 aa17.56■□□□□ 0.4
CPSF6-204ENST00000547486 ZC3H4Q9UPT8 1303 aaKnown RBP17.56■□□□□ 0.4
CPSF6-204ENST00000547486 GLTPD2A6NH11 291 aa17.56■□□□□ 0.4
CPSF6-204ENST00000547486 NEUROD2Q15784 382 aa17.56■□□□□ 0.4
CPSF6-204ENST00000547486 RBM46Q8TBY0 533 aaKnown RBP17.56■□□□□ 0.4
CPSF6-204ENST00000547486 ADAMTS8Q9UP79 889 aa17.56■□□□□ 0.4
CPSF6-204ENST00000547486 PDIA6Q15084 440 aa17.55■□□□□ 0.4
CPSF6-204ENST00000547486 LRP10Q7Z4F1 713 aa17.55■□□□□ 0.4
CPSF6-204ENST00000547486 C16orf71Q8IYS4 520 aaPredicted RBP17.55■□□□□ 0.4
CPSF6-204ENST00000547486 ZBTB3Q9H5J0 574 aa17.55■□□□□ 0.4
CPSF6-204ENST00000547486 NPR1P16066 1061 aa17.54■□□□□ 0.4
CPSF6-204ENST00000547486 EIF2S2P20042 333 aaKnown RBP17.54■□□□□ 0.4
CPSF6-204ENST00000547486 NUTM1Q86Y26 1132 aa17.54■□□□□ 0.4
CPSF6-204ENST00000547486 BABAM1Q9NWV8 329 aa17.54■□□□□ 0.4
CPSF6-204ENST00000547486 TRIM35Q9UPQ4 493 aa17.54■□□□□ 0.4
CPSF6-204ENST00000547486 POTECB2RU33 542 aa17.53■□□□□ 0.4
CPSF6-204ENST00000547486 GPTP24298 496 aa17.53■□□□□ 0.4
CPSF6-204ENST00000547486 GTF2E1P29083 439 aaPredicted RBP17.53■□□□□ 0.4
CPSF6-204ENST00000547486 PROSER3Q2NL68 480 aa17.53■□□□□ 0.4
CPSF6-204ENST00000547486 ERFEQ4G0M1 354 aa17.53■□□□□ 0.4
CPSF6-204ENST00000547486 OLFM4Q6UX06 510 aa17.53■□□□□ 0.4
CPSF6-204ENST00000547486 KIF6Q6ZMV9 814 aa17.53■□□□□ 0.4
CPSF6-204ENST00000547486 RUNDC1Q96C34 613 aa17.53■□□□□ 0.4
CPSF6-204ENST00000547486 TAOK3Q9H2K8 898 aa17.53■□□□□ 0.4
CPSF6-204ENST00000547486 PRKRIP1Q9H875 184 aaPredicted RBP17.53■□□□□ 0.4
CPSF6-204ENST00000547486 UBN2Q6ZU65 1347 aa17.52■□□□□ 0.4
CPSF6-204ENST00000547486 LTBP3Q9NS15 1303 aa17.52■□□□□ 0.4
CPSF6-204ENST00000547486 SLX4Q8IY92 1834 aa17.52■□□□□ 0.4
CPSF6-204ENST00000547486 CHL1O00533 1208 aa17.52■□□□□ 0.4
CPSF6-204ENST00000547486 ANXA1P04083 346 aa17.52■□□□□ 0.4
CPSF6-204ENST00000547486 APLP1P51693 650 aa17.52■□□□□ 0.4
CPSF6-204ENST00000547486 LMOD3Q0VAK6 560 aa17.52■□□□□ 0.4
CPSF6-204ENST00000547486 KRT24Q2M2I5 525 aa17.52■□□□□ 0.4
CPSF6-204ENST00000547486 SUSD4Q5VX71 490 aa17.52■□□□□ 0.4
CPSF6-204ENST00000547486 ZNF34Q8IZ26 560 aa17.52■□□□□ 0.4
CPSF6-204ENST00000547486 DNAJC5GQ8N7S2 189 aa17.52■□□□□ 0.4
CPSF6-204ENST00000547486 ERBB4Q15303 1308 aa17.51■□□□□ 0.39
CPSF6-204ENST00000547486 VEGFAP15692 232 aaPredicted RBP17.51■□□□□ 0.39
CPSF6-204ENST00000547486 WDR43Q15061 677 aaKnown RBP eCLIP17.51■□□□□ 0.39
CPSF6-204ENST00000547486 ABCC12Q96J65 1359 aa17.51■□□□□ 0.39
CPSF6-204ENST00000547486 LAMB4A4D0S4 1761 aa17.51■□□□□ 0.39
CPSF6-204ENST00000547486 FSTL1Q12841 308 aa17.5■□□□□ 0.39
CPSF6-204ENST00000547486 CRY2Q49AN0 593 aa17.5■□□□□ 0.39
CPSF6-204ENST00000547486 SOGA3Q5TF21 947 aa17.5■□□□□ 0.39
CPSF6-204ENST00000547486 GIGYF2Q6Y7W6 1299 aaKnown RBP17.5■□□□□ 0.39
CPSF6-204ENST00000547486 NECTIN2Q92692 538 aa17.5■□□□□ 0.39
CPSF6-204ENST00000547486 NYXQ9GZU5 481 aa17.5■□□□□ 0.39
CPSF6-204ENST00000547486 LAS1LQ9Y4W2 734 aaKnown RBP17.5■□□□□ 0.39
CPSF6-204ENST00000547486 HTRA3P83110 453 aa17.49■□□□□ 0.39
CPSF6-204ENST00000547486 DPY19L2Q6NUT2 758 aa17.49■□□□□ 0.39
CPSF6-204ENST00000547486 CCDC93Q567U6 631 aa17.48■□□□□ 0.39
CPSF6-204ENST00000547486 C3orf67Q6ZVT6 689 aa17.48■□□□□ 0.39
CPSF6-204ENST00000547486 FER1L6Q2WGJ9 1857 aa17.48■□□□□ 0.39
CPSF6-204ENST00000547486 DDNO94850 711 aaPredicted RBP17.47■□□□□ 0.39
CPSF6-204ENST00000547486 NTSR2O95665 410 aa17.47■□□□□ 0.39
CPSF6-204ENST00000547486 ALDH1B1P30837 517 aa17.47■□□□□ 0.39
CPSF6-204ENST00000547486 COPS6Q7L5N1 327 aa17.47■□□□□ 0.39
CPSF6-204ENST00000547486 FKBP4Q02790 459 aaKnown RBP eCLIP17.46■□□□□ 0.39
CPSF6-204ENST00000547486 SLC51AQ86UW1 340 aa17.46■□□□□ 0.39
CPSF6-204ENST00000547486 SMC1BQ8NDV3 1235 aa17.46■□□□□ 0.39
CPSF6-204ENST00000547486 XAGE3Q8WTP9 111 aa17.46■□□□□ 0.39
CPSF6-204ENST00000547486 ZNF277Q9NRM2 450 aaPredicted RBP17.46■□□□□ 0.39
CPSF6-204ENST00000547486 CCDC88AQ3V6T2 1871 aa17.46■□□□□ 0.38
CPSF6-204ENST00000547486 HOXA10P31260 410 aaPredicted RBP17.45■□□□□ 0.38
CPSF6-204ENST00000547486 AIMP1Q12904 312 aaKnown RBP17.45■□□□□ 0.38
CPSF6-204ENST00000547486 RTKN2Q8IZC4 609 aa17.45■□□□□ 0.38
CPSF6-204ENST00000547486 DDX21Q9NR30 783 aaKnown RBP eCLIP17.45■□□□□ 0.38
CPSF6-204ENST00000547486 IBTKQ9P2D0 1353 aaPredicted RBP17.44■□□□□ 0.38
CPSF6-204ENST00000547486 PARP10Q53GL7 1025 aa17.44■□□□□ 0.38
CPSF6-204ENST00000547486 PPP1R42Q7Z4L9 355 aa17.44■□□□□ 0.38
CPSF6-204ENST00000547486 SYNE4Q8N205 404 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 257 ms