RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 CFAP53Q96M91 514 aa16.44■□□□□ 0.22
SNHG1-216ENST00000541416 CAMTA2O94983 1202 aa16.43■□□□□ 0.22
SNHG1-216ENST00000541416 SRGNP10124 158 aa16.43■□□□□ 0.22
SNHG1-216ENST00000541416 CLEC4GQ6UXB4 293 aa16.43■□□□□ 0.22
SNHG1-216ENST00000541416 CCDC24Q8N4L8 307 aa16.43■□□□□ 0.22
SNHG1-216ENST00000541416 SIPA1L3O60292 1781 aaPredicted RBP16.43■□□□□ 0.22
SNHG1-216ENST00000541416 COL11A2P13942 1736 aaPredicted RBP16.42■□□□□ 0.22
SNHG1-216ENST00000541416 A1BGP04217 495 aa16.42■□□□□ 0.22
SNHG1-216ENST00000541416 NBPF5PQ86XG9 351 aaPredicted RBP16.42■□□□□ 0.22
SNHG1-216ENST00000541416 CEMIPQ8WUJ3 1361 aa16.41■□□□□ 0.22
SNHG1-216ENST00000541416 DDNO94850 711 aaPredicted RBP16.41■□□□□ 0.22
SNHG1-216ENST00000541416 CCDC93Q567U6 631 aa16.41■□□□□ 0.22
SNHG1-216ENST00000541416 RTF1Q92541 710 aaKnown RBP16.41■□□□□ 0.22
SNHG1-216ENST00000541416 NUDCQ9Y266 331 aa16.41■□□□□ 0.22
SNHG1-216ENST00000541416 COL3A1P02461 1466 aaPredicted RBP16.41■□□□□ 0.22
SNHG1-216ENST00000541416 TPTE2Q6XPS3 522 aa16.4■□□□□ 0.22
SNHG1-216ENST00000541416 LDHDQ86WU2 507 aa16.4■□□□□ 0.22
SNHG1-216ENST00000541416 BCORQ6W2J9 1755 aa16.4■□□□□ 0.22
SNHG1-216ENST00000541416 ARFGEF2Q9Y6D5 1785 aa16.4■□□□□ 0.22
SNHG1-216ENST00000541416 CACNA1SQ13698 1873 aa16.39■□□□□ 0.22
SNHG1-216ENST00000541416 RGL2O15211 777 aa16.39■□□□□ 0.21
SNHG1-216ENST00000541416 SNRPA1P09661 255 aaKnown RBP16.39■□□□□ 0.21
SNHG1-216ENST00000541416 NPR1P16066 1061 aa16.39■□□□□ 0.21
SNHG1-216ENST00000541416 CNGB1Q14028 1251 aaPredicted RBP16.39■□□□□ 0.21
SNHG1-216ENST00000541416 SLX4Q8IY92 1834 aa16.39■□□□□ 0.21
SNHG1-216ENST00000541416 SCN4AP35499 1836 aa16.38■□□□□ 0.21
SNHG1-216ENST00000541416 PRKAR2BP31323 418 aa16.38■□□□□ 0.21
SNHG1-216ENST00000541416 RTKN2Q8IZC4 609 aa16.38■□□□□ 0.21
SNHG1-216ENST00000541416 L3MBTL3Q96JM7 780 aaPredicted RBP16.38■□□□□ 0.21
SNHG1-216ENST00000541416 MKRN1Q9UHC7 482 aaKnown RBP16.38■□□□□ 0.21
SNHG1-216ENST00000541416 ALDH1B1P30837 517 aa16.37■□□□□ 0.21
SNHG1-216ENST00000541416 FKBP4Q02790 459 aaKnown RBP eCLIP16.37■□□□□ 0.21
SNHG1-216ENST00000541416 AIDAQ96BJ3 306 aa16.37■□□□□ 0.21
SNHG1-216ENST00000541416 GTF2E1P29083 439 aaPredicted RBP16.36■□□□□ 0.21
SNHG1-216ENST00000541416 TAF1DQ9H5J8 278 aaPredicted RBP16.36■□□□□ 0.21
SNHG1-216ENST00000541416 NIP7Q9Y221 180 aaKnown RBP eCLIP16.36■□□□□ 0.216e-44■■■■□ 24.8
SNHG1-216ENST00000541416 USP16Q9Y5T5 823 aa16.36■□□□□ 0.21
SNHG1-216ENST00000541416 CNTNAP1P78357 1384 aa16.36■□□□□ 0.21
SNHG1-216ENST00000541416 TMEM88BA6NKF7 163 aa16.35■□□□□ 0.21
SNHG1-216ENST00000541416 KCNQ3O43525 872 aa16.35■□□□□ 0.21
SNHG1-216ENST00000541416 PNMA8AQ86V59 439 aaPredicted RBP16.35■□□□□ 0.21
SNHG1-216ENST00000541416 PHACTR3Q96KR7 559 aa16.35■□□□□ 0.21
SNHG1-216ENST00000541416 RSPH6AQ9H0K4 717 aa16.35■□□□□ 0.21
SNHG1-216ENST00000541416 HACL1Q9UJ83 578 aa16.35■□□□□ 0.21
SNHG1-216ENST00000541416 KLRG2A4D1S0 409 aaPredicted RBP16.34■□□□□ 0.21
SNHG1-216ENST00000541416 POTEIP0CG38 1075 aa16.34■□□□□ 0.21
SNHG1-216ENST00000541416 POTEJP0CG39 1038 aa16.34■□□□□ 0.21
SNHG1-216ENST00000541416 EAPPQ56P03 285 aaPredicted RBP16.34■□□□□ 0.21
SNHG1-216ENST00000541416 C7orf43Q8WVR3 580 aa16.34■□□□□ 0.21
SNHG1-216ENST00000541416 CLEC11AQ9Y240 323 aa16.34■□□□□ 0.21
SNHG1-216ENST00000541416 HTATSF1O43719 755 aaKnown RBP16.33■□□□□ 0.2
SNHG1-216ENST00000541416 NEFMP07197 916 aa16.33■□□□□ 0.2
SNHG1-216ENST00000541416 U2AF1L5P0DN76 240 aaPredicted RBP16.33■□□□□ 0.2
SNHG1-216ENST00000541416 U2AF1Q01081 240 aaKnown RBP eCLIP16.33■□□□□ 0.22e-12■■□□□ 12.7
SNHG1-216ENST00000541416 NYXQ9GZU5 481 aa16.33■□□□□ 0.2
SNHG1-216ENST00000541416 PRDM10Q9NQV6 1147 aa16.33■□□□□ 0.2
SNHG1-216ENST00000541416 PASKQ96RG2 1323 aa16.33■□□□□ 0.2
SNHG1-216ENST00000541416 PIP4K2AP48426 406 aaPredicted RBP16.32■□□□□ 0.2
SNHG1-216ENST00000541416 CTCFP49711 727 aaPredicted RBP16.32■□□□□ 0.2
SNHG1-216ENST00000541416 JDP2Q8WYK2 163 aa16.32■□□□□ 0.2
SNHG1-216ENST00000541416 ZNF277Q9NRM2 450 aaPredicted RBP16.32■□□□□ 0.2
SNHG1-216ENST00000541416 EPHX2P34913 555 aa16.31■□□□□ 0.2
SNHG1-216ENST00000541416 IARSP41252 1262 aaKnown RBP16.31■□□□□ 0.2
SNHG1-216ENST00000541416 GRIPAP1Q4V328 841 aa16.31■□□□□ 0.2
SNHG1-216ENST00000541416 CC2D2BQ6DHV5 1058 aa16.31■□□□□ 0.2
SNHG1-216ENST00000541416 MCM10Q7L590 875 aa16.31■□□□□ 0.2
SNHG1-216ENST00000541416 GPC2Q8N158 579 aa16.31■□□□□ 0.2
SNHG1-216ENST00000541416 PRAMEF22A3QJZ6 481 aa16.3■□□□□ 0.2
SNHG1-216ENST00000541416 FAM177BA6PVY3 158 aa16.3■□□□□ 0.2
SNHG1-216ENST00000541416 FOXN1O15353 648 aa16.3■□□□□ 0.2
SNHG1-216ENST00000541416 TAF7Q15545 349 aaPredicted RBP16.3■□□□□ 0.2
SNHG1-216ENST00000541416 ZNF541Q9H0D2 1346 aa16.29■□□□□ 0.2
SNHG1-216ENST00000541416 ITGBL1O95965 494 aaPredicted RBP16.29■□□□□ 0.2
SNHG1-216ENST00000541416 SYNE4Q8N205 404 aa16.29■□□□□ 0.2
SNHG1-216ENST00000541416 PSMD1Q99460 953 aa16.29■□□□□ 0.2
SNHG1-216ENST00000541416 FZD9O00144 591 aa16.28■□□□□ 0.2
SNHG1-216ENST00000541416 LMOD1P29536 600 aaPredicted RBP16.28■□□□□ 0.2
SNHG1-216ENST00000541416 VEGFBP49765 207 aa16.28■□□□□ 0.2
SNHG1-216ENST00000541416 EIF6P56537 245 aaKnown RBP16.28■□□□□ 0.2
SNHG1-216ENST00000541416 KIF6Q6ZMV9 814 aa16.28■□□□□ 0.2
SNHG1-216ENST00000541416 CNTROBQ8N137 903 aa16.28■□□□□ 0.2
SNHG1-216ENST00000541416 PNISRQ8TF01 805 aaKnown RBP16.28■□□□□ 0.2
SNHG1-216ENST00000541416 RPGRQ92834 1020 aaKnown RBP16.28■□□□□ 0.2
SNHG1-216ENST00000541416 RNF123Q5XPI4 1314 aa16.27■□□□□ 0.2
SNHG1-216ENST00000541416 NBPF26B4DH59 902 aa16.27■□□□□ 0.2
SNHG1-216ENST00000541416 ERVV-1B6SEH8 477 aa16.27■□□□□ 0.2
SNHG1-216ENST00000541416 DEFB115Q30KQ5 88 aa16.27■□□□□ 0.2
SNHG1-216ENST00000541416 NBPF10Q6P3W6 841 aaKnown RBP16.27■□□□□ 0.2
SNHG1-216ENST00000541416 NBPF15Q8N660 670 aa16.27■□□□□ 0.2
SNHG1-216ENST00000541416 TMX4Q9H1E5 349 aaPredicted RBP16.27■□□□□ 0.2
SNHG1-216ENST00000541416 MAP2K1Q02750 393 aaPredicted RBP16.26■□□□□ 0.19
SNHG1-216ENST00000541416 LAMB4A4D0S4 1761 aa16.26■□□□□ 0.19
SNHG1-216ENST00000541416 RASSF10A6NK89 507 aa16.25■□□□□ 0.19
SNHG1-216ENST00000541416 PPP2R1AP30153 589 aa16.25■□□□□ 0.19
SNHG1-216ENST00000541416 DCTN1Q14203 1278 aa16.25■□□□□ 0.19
SNHG1-216ENST00000541416 HLFQ16534 295 aa16.25■□□□□ 0.19
SNHG1-216ENST00000541416 CRY2Q49AN0 593 aa16.25■□□□□ 0.19
SNHG1-216ENST00000541416 MAP1SQ66K74 1059 aaPredicted RBP16.25■□□□□ 0.19
SNHG1-216ENST00000541416 OLFM4Q6UX06 510 aa16.25■□□□□ 0.19
SNHG1-216ENST00000541416 WBP1LQ9NX94 342 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 105.9 ms