RNA–Protein interactions for RNA: ENST00000541122.6

SMARCA4-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS P4 TSL 5 BASIC

Gene SMARCA4, Length 5,139 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-207ENST00000541122 GOLGA1Q92805 767 aa17.27■□□□□ 0.35
SMARCA4-207ENST00000541122 PPP1R12BO60237 982 aaPredicted RBP17.26■□□□□ 0.35
SMARCA4-207ENST00000541122 NF2P35240 595 aa17.26■□□□□ 0.35
SMARCA4-207ENST00000541122 IKQ13123 557 aaPredicted RBP17.26■□□□□ 0.35
SMARCA4-207ENST00000541122 BOLA2Q9H3K6 86 aa17.26■□□□□ 0.35
SMARCA4-207ENST00000541122 CDK13Q14004 1512 aaKnown RBP17.26■□□□□ 0.35
SMARCA4-207ENST00000541122 HSF2BPO75031 334 aa17.26■□□□□ 0.35
SMARCA4-207ENST00000541122 LARP1Q6PKG0 1096 aaKnown RBP17.26■□□□□ 0.35
SMARCA4-207ENST00000541122 AIDAQ96BJ3 306 aa17.26■□□□□ 0.35
SMARCA4-207ENST00000541122 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.26■□□□□ 0.351e-6■■■■□ 25.1
SMARCA4-207ENST00000541122 IRX3P78415 501 aaPredicted RBP17.26■□□□□ 0.35
SMARCA4-207ENST00000541122 IPO4Q8TEX9 1081 aaKnown RBP17.26■□□□□ 0.35
SMARCA4-207ENST00000541122 SPG7Q9UQ90 795 aa17.26■□□□□ 0.35
SMARCA4-207ENST00000541122 RRS1Q15050 365 aaKnown RBP17.26■□□□□ 0.35
SMARCA4-207ENST00000541122 CTAGE1Q96RT6 745 aa17.25■□□□□ 0.35
SMARCA4-207ENST00000541122 UBASH3AP57075 661 aa17.25■□□□□ 0.35
SMARCA4-207ENST00000541122 FAM114A1Q8IWE2 563 aa17.25■□□□□ 0.35
SMARCA4-207ENST00000541122 ESYT1Q9BSJ8 1104 aa17.25■□□□□ 0.35
SMARCA4-207ENST00000541122 ASXL1Q8IXJ9 1541 aa17.25■□□□□ 0.35
SMARCA4-207ENST00000541122 CPLX3Q8WVH0 158 aa17.25■□□□□ 0.35
SMARCA4-207ENST00000541122 SEPT11Q9NVA2 429 aaKnown RBP17.25■□□□□ 0.35
SMARCA4-207ENST00000541122 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.25■□□□□ 0.351e-8■■■□□ 18.8
SMARCA4-207ENST00000541122 OPA1O60313 960 aa17.25■□□□□ 0.35
SMARCA4-207ENST00000541122 KCNG4Q8TDN1 519 aa17.25■□□□□ 0.35
SMARCA4-207ENST00000541122 DISP3Q9P2K9 1392 aa17.24■□□□□ 0.35
SMARCA4-207ENST00000541122 HSPA4P34932 840 aa17.24■□□□□ 0.35
SMARCA4-207ENST00000541122 TAOK3Q9H2K8 898 aa17.24■□□□□ 0.35
SMARCA4-207ENST00000541122 TYRO3Q06418 890 aa17.24■□□□□ 0.35
SMARCA4-207ENST00000541122 TICAM2Q86XR7 235 aa17.24■□□□□ 0.35
SMARCA4-207ENST00000541122 BIN1O00499 593 aa17.24■□□□□ 0.35
SMARCA4-207ENST00000541122 CCDC178Q5BJE1 867 aa17.24■□□□□ 0.35
SMARCA4-207ENST00000541122 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.24■□□□□ 0.35
SMARCA4-207ENST00000541122 ERO1AQ96HE7 468 aa17.24■□□□□ 0.35
SMARCA4-207ENST00000541122 RSPH14Q9UHP6 348 aa17.24■□□□□ 0.35
SMARCA4-207ENST00000541122 GOLGA8BA8MQT2 603 aa17.24■□□□□ 0.35
SMARCA4-207ENST00000541122 GOLIM4O00461 696 aa17.24■□□□□ 0.35
SMARCA4-207ENST00000541122 TTC31Q49AM3 519 aaPredicted RBP17.24■□□□□ 0.35
SMARCA4-207ENST00000541122 MYRIPQ8NFW9 859 aa17.24■□□□□ 0.35
SMARCA4-207ENST00000541122 NEK1Q96PY6 1258 aa17.24■□□□□ 0.35
SMARCA4-207ENST00000541122 PIP4K2BP78356 416 aa17.23■□□□□ 0.35
SMARCA4-207ENST00000541122 GUCY1B3Q02153 619 aa17.23■□□□□ 0.35
SMARCA4-207ENST00000541122 SSRP1Q08945 709 aaKnown RBP17.23■□□□□ 0.35
SMARCA4-207ENST00000541122 MCM10Q7L590 875 aa17.23■□□□□ 0.35
SMARCA4-207ENST00000541122 RASSF4Q9H2L5 321 aa17.23■□□□□ 0.35
SMARCA4-207ENST00000541122 FAM135AQ9P2D6 1515 aa17.23■□□□□ 0.35
SMARCA4-207ENST00000541122 ZNF445P59923 1031 aa17.23■□□□□ 0.35
SMARCA4-207ENST00000541122 TAF7Q15545 349 aaPredicted RBP17.23■□□□□ 0.35
SMARCA4-207ENST00000541122 CCDC113Q9H0I3 377 aa17.23■□□□□ 0.35
SMARCA4-207ENST00000541122 CAPN2P17655 700 aa17.23■□□□□ 0.35
SMARCA4-207ENST00000541122 TXNDC2Q86VQ3 553 aa17.23■□□□□ 0.35
SMARCA4-207ENST00000541122 ANKRD44Q8N8A2 993 aa17.23■□□□□ 0.35
SMARCA4-207ENST00000541122 MRPS27Q92552 414 aaKnown RBP17.23■□□□□ 0.35
SMARCA4-207ENST00000541122 ANKRD36BQ8N2N9 1353 aa17.23■□□□□ 0.35
SMARCA4-207ENST00000541122 CABP4P57796 275 aa17.23■□□□□ 0.35
SMARCA4-207ENST00000541122 SPECC1Q5M775 1068 aa17.23■□□□□ 0.35
SMARCA4-207ENST00000541122 SSBP05455 408 aaKnown RBP eCLIP17.22■□□□□ 0.35
SMARCA4-207ENST00000541122 SPAG1Q07617 926 aa17.22■□□□□ 0.35
SMARCA4-207ENST00000541122 DACT1Q9NYF0 836 aa17.22■□□□□ 0.35
SMARCA4-207ENST00000541122 NPHP3Q7Z494 1330 aa17.22■□□□□ 0.35
SMARCA4-207ENST00000541122 MYL6BP14649 208 aa17.22■□□□□ 0.35
SMARCA4-207ENST00000541122 HLTFQ14527 1009 aaKnown RBP eCLIP17.22■□□□□ 0.351e-6■□□□□ 10.1
SMARCA4-207ENST00000541122 TOPBP1Q92547 1522 aa17.22■□□□□ 0.35
SMARCA4-207ENST00000541122 CUL7Q14999 1698 aa17.22■□□□□ 0.35
SMARCA4-207ENST00000541122 IFIT1P09914 478 aaKnown RBP17.22■□□□□ 0.35
SMARCA4-207ENST00000541122 NBPF11Q86T75 865 aa17.22■□□□□ 0.35
SMARCA4-207ENST00000541122 CCDC61Q9Y6R9 512 aa17.22■□□□□ 0.35
SMARCA4-207ENST00000541122 FLIIQ13045 1269 aa17.21■□□□□ 0.35
SMARCA4-207ENST00000541122 MPHOSPH8Q99549 860 aa17.21■□□□□ 0.35
SMARCA4-207ENST00000541122 PDE1AP54750 535 aa17.21■□□□□ 0.35
SMARCA4-207ENST00000541122 TMX1Q9H3N1 280 aa17.21■□□□□ 0.35
SMARCA4-207ENST00000541122 SLC12A7Q9Y666 1083 aa17.21■□□□□ 0.35
SMARCA4-207ENST00000541122 ZNF213O14771 459 aa17.21■□□□□ 0.35
SMARCA4-207ENST00000541122 MAATS1Q7Z4T9 603 aa17.21■□□□□ 0.35
SMARCA4-207ENST00000541122 DDX54Q8TDD1 881 aaKnown RBP17.21■□□□□ 0.35
SMARCA4-207ENST00000541122 PIBF1Q8WXW3 757 aa17.21■□□□□ 0.35
SMARCA4-207ENST00000541122 RAB34Q9BZG1 259 aa17.21■□□□□ 0.34
SMARCA4-207ENST00000541122 BCCIPQ9P287 314 aaKnown RBP eCLIP17.21■□□□□ 0.34
SMARCA4-207ENST00000541122 NUP160Q12769 1436 aa17.2■□□□□ 0.34
SMARCA4-207ENST00000541122 GOLGA8AA7E2F4 631 aa17.2■□□□□ 0.34
SMARCA4-207ENST00000541122 EBAG9O00559 213 aa17.2■□□□□ 0.34
SMARCA4-207ENST00000541122 IDH1O75874 414 aaKnown RBP17.2■□□□□ 0.34
SMARCA4-207ENST00000541122 SYKP43405 635 aa17.2■□□□□ 0.34
SMARCA4-207ENST00000541122 DNAJC25Q9H1X3 360 aa17.2■□□□□ 0.34
SMARCA4-207ENST00000541122 PTGS1P23219 599 aa17.2■□□□□ 0.34
SMARCA4-207ENST00000541122 MCM6Q14566 821 aa17.2■□□□□ 0.34
SMARCA4-207ENST00000541122 RNF41Q9H4P4 317 aaPredicted RBP17.2■□□□□ 0.34
SMARCA4-207ENST00000541122 F6X3S4 739 aa17.2■□□□□ 0.34
SMARCA4-207ENST00000541122 POTEJP0CG39 1038 aa17.2■□□□□ 0.34
SMARCA4-207ENST00000541122 SYT1P21579 422 aa17.2■□□□□ 0.34
SMARCA4-207ENST00000541122 CYLC1P35663 651 aaPredicted RBP17.2■□□□□ 0.34
SMARCA4-207ENST00000541122 TDRD12Q587J7 1177 aaKnown RBP17.2■□□□□ 0.34
SMARCA4-207ENST00000541122 DHX37Q8IY37 1157 aaKnown RBP17.2■□□□□ 0.34
SMARCA4-207ENST00000541122 ORC3Q9UBD5 711 aaPredicted RBP17.2■□□□□ 0.34
SMARCA4-207ENST00000541122 MTIF2P46199 727 aaKnown RBP17.19■□□□□ 0.34
SMARCA4-207ENST00000541122 ZSWIM4Q9H7M6 989 aa17.19■□□□□ 0.34
SMARCA4-207ENST00000541122 JADE2Q9NQC1 790 aa17.19■□□□□ 0.34
SMARCA4-207ENST00000541122 USP16Q9Y5T5 823 aa17.19■□□□□ 0.34
SMARCA4-207ENST00000541122 PIK3R4Q99570 1358 aa17.19■□□□□ 0.34
SMARCA4-207ENST00000541122 IBSPP21815 317 aaPredicted RBP17.19■□□□□ 0.34
SMARCA4-207ENST00000541122 IFI16Q16666 785 aaKnown RBP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms