RNA–Protein interactions for RNA: ENST00000536301.1

CHD4-205, Transcript of chromodomain helicase DNA binding protein 4, human

TSL 3

Gene CHD4, Length 107 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD4-205	ENST00000536301	BRIP1	Q9BX63	1249 aa		7.21	□□□□□ -1.26
CHD4-205	ENST00000536301	ZNF277	Q9NRM2	450 aa	Predicted RBP	7.21	□□□□□ -1.26
CHD4-205	ENST00000536301	PCDH10	Q9P2E7	1040 aa		7.21	□□□□□ -1.26
CHD4-205	ENST00000536301	TBC1D2B	Q9UPU7	963 aa		7.21	□□□□□ -1.26
CHD4-205	ENST00000536301	CLEC11A	Q9Y240	323 aa		7.21	□□□□□ -1.26
CHD4-205	ENST00000536301	BCOR	Q6W2J9	1755 aa		7.2	□□□□□ -1.26
CHD4-205	ENST00000536301	IQCA1L	A6NCM1	817 aa		7.2	□□□□□ -1.26
CHD4-205	ENST00000536301	AOC2	O75106	756 aa		7.2	□□□□□ -1.26
CHD4-205	ENST00000536301	SRGN	P10124	158 aa		7.2	□□□□□ -1.26
CHD4-205	ENST00000536301	IL13	P35225	146 aa		7.2	□□□□□ -1.26
CHD4-205	ENST00000536301	GRM1	Q13255	1194 aa		7.2	□□□□□ -1.26
CHD4-205	ENST00000536301	AKAP4	Q5JQC9	854 aa		7.2	□□□□□ -1.26
CHD4-205	ENST00000536301	CAPNS2	Q96L46	248 aa		7.2	□□□□□ -1.26
CHD4-205	ENST00000536301	HACL1	Q9UJ83	578 aa		7.2	□□□□□ -1.26
CHD4-205	ENST00000536301	ABT1	Q9ULW3	272 aa	Known RBP	7.2	□□□□□ -1.26
CHD4-205	ENST00000536301	ZNF330	Q9Y3S2	320 aa	Predicted RBP	7.2	□□□□□ -1.26
CHD4-205	ENST00000536301	TRAF5	O00463	557 aa		7.19	□□□□□ -1.26
CHD4-205	ENST00000536301	CAMTA2	O94983	1202 aa		7.19	□□□□□ -1.26
CHD4-205	ENST00000536301	A1BG	P04217	495 aa		7.19	□□□□□ -1.26
CHD4-205	ENST00000536301	PDE6B	P35913	854 aa		7.19	□□□□□ -1.26
CHD4-205	ENST00000536301	PIP4K2A	P48426	406 aa	Predicted RBP	7.19	□□□□□ -1.26
CHD4-205	ENST00000536301	MAP2K1	Q02750	393 aa	Predicted RBP	7.19	□□□□□ -1.26
CHD4-205	ENST00000536301	CDCA8	Q53HL2	280 aa		7.19	□□□□□ -1.26
CHD4-205	ENST00000536301	STYK1	Q6J9G0	422 aa		7.19	□□□□□ -1.26
CHD4-205	ENST00000536301	CNKSR1	Q969H4	720 aa		7.19	□□□□□ -1.26
CHD4-205	ENST00000536301	CFAP44	Q96MT7	982 aa		7.19	□□□□□ -1.26
CHD4-205	ENST00000536301	MCOLN1	Q9GZU1	580 aa		7.19	□□□□□ -1.26
CHD4-205	ENST00000536301	SNED1	Q8TER0	1413 aa		7.18	□□□□□ -1.26
CHD4-205	ENST00000536301	SIPA1L3	O60292	1781 aa	Predicted RBP	7.18	□□□□□ -1.26
CHD4-205	ENST00000536301	KCNQ3	O43525	872 aa		7.18	□□□□□ -1.26
CHD4-205	ENST00000536301	HMOX1	P09601	288 aa		7.18	□□□□□ -1.26
CHD4-205	ENST00000536301	FKBP4	Q02790	459 aa	Known RBP eCLIP	7.18	□□□□□ -1.26
CHD4-205	ENST00000536301	MTHFSD	Q2M296	383 aa	Known RBP	7.18	□□□□□ -1.26
CHD4-205	ENST00000536301	CCDC93	Q567U6	631 aa		7.18	□□□□□ -1.26
CHD4-205	ENST00000536301	CST9	Q5W186	159 aa		7.18	□□□□□ -1.26
CHD4-205	ENST00000536301	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	7.18	□□□□□ -1.26
CHD4-205	ENST00000536301	CNBD1	Q8NA66	436 aa		7.18	□□□□□ -1.26
CHD4-205	ENST00000536301	MASTL	Q96GX5	879 aa		7.18	□□□□□ -1.26
CHD4-205	ENST00000536301	ZNF496	Q96IT1	587 aa	Predicted RBP	7.18	□□□□□ -1.26
CHD4-205	ENST00000536301	DDX21	Q9NR30	783 aa	Known RBP eCLIP	7.18	□□□□□ -1.26
CHD4-205	ENST00000536301	FZD9	O00144	591 aa		7.17	□□□□□ -1.26
CHD4-205	ENST00000536301	VSIG10	Q8N0Z9	540 aa		7.17	□□□□□ -1.26
CHD4-205	ENST00000536301	GPR101	Q96P66	508 aa	Predicted RBP	7.17	□□□□□ -1.26
CHD4-205	ENST00000536301	ZIC5	Q96T25	663 aa		7.17	□□□□□ -1.26
CHD4-205	ENST00000536301	PANK3	Q9H999	370 aa		7.17	□□□□□ -1.26
CHD4-205	ENST00000536301	PDZRN3	Q9UPQ7	1066 aa		7.17	□□□□□ -1.26
CHD4-205	ENST00000536301	HEG1	Q9ULI3	1381 aa		7.17	□□□□□ -1.26
CHD4-205	ENST00000536301		A0A087WZG4	1122 aa		7.16	□□□□□ -1.26
CHD4-205	ENST00000536301	PRAMEF22	A3QJZ6	481 aa		7.16	□□□□□ -1.26
CHD4-205	ENST00000536301	IARS	P41252	1262 aa	Known RBP	7.16	□□□□□ -1.26
CHD4-205	ENST00000536301	EPS15	P42566	896 aa		7.16	□□□□□ -1.26
CHD4-205	ENST00000536301	SCNN1D	P51172	638 aa		7.16	□□□□□ -1.26
CHD4-205	ENST00000536301	SYNE4	Q8N205	404 aa		7.16	□□□□□ -1.26
CHD4-205	ENST00000536301	SETDB2	Q96T68	719 aa		7.16	□□□□□ -1.26
CHD4-205	ENST00000536301	GJA3	Q9Y6H8	435 aa		7.16	□□□□□ -1.26
CHD4-205	ENST00000536301	FAM177B	A6PVY3	158 aa		7.15	□□□□□ -1.26
CHD4-205	ENST00000536301	NPHP1	O15259	732 aa		7.15	□□□□□ -1.26
CHD4-205	ENST00000536301	STARD3NL	O95772	234 aa		7.15	□□□□□ -1.26
CHD4-205	ENST00000536301	IL6ST	P40189	918 aa	Predicted RBP	7.15	□□□□□ -1.26
CHD4-205	ENST00000536301	SOX10	P56693	466 aa		7.15	□□□□□ -1.26
CHD4-205	ENST00000536301	ST5	P78524	1137 aa		7.15	□□□□□ -1.26
CHD4-205	ENST00000536301	DGKZ	Q13574	1117 aa		7.15	□□□□□ -1.26
CHD4-205	ENST00000536301	SOGA3	Q5TF21	947 aa		7.15	□□□□□ -1.26
CHD4-205	ENST00000536301	MORC1	Q86VD1	984 aa		7.15	□□□□□ -1.26
CHD4-205	ENST00000536301	DZIP3	Q86Y13	1208 aa	Known RBP	7.15	□□□□□ -1.26
CHD4-205	ENST00000536301	IL17RE	Q8NFR9	667 aa		7.15	□□□□□ -1.26
CHD4-205	ENST00000536301	TLL2	Q9Y6L7	1015 aa		7.15	□□□□□ -1.26
CHD4-205	ENST00000536301	POLR2A	P24928	1970 aa	Known RBP	7.15	□□□□□ -1.27
CHD4-205	ENST00000536301	KLRG2	A4D1S0	409 aa	Predicted RBP	7.14	□□□□□ -1.27
CHD4-205	ENST00000536301	NPR1	P16066	1061 aa		7.14	□□□□□ -1.27
CHD4-205	ENST00000536301	DLK2	Q6UY11	383 aa		7.14	□□□□□ -1.27
CHD4-205	ENST00000536301	PNMA8A	Q86V59	439 aa	Predicted RBP	7.14	□□□□□ -1.27
CHD4-205	ENST00000536301	NBPF5P	Q86XG9	351 aa	Predicted RBP	7.14	□□□□□ -1.27
CHD4-205	ENST00000536301	TTC5	Q8N0Z6	440 aa		7.14	□□□□□ -1.27
CHD4-205	ENST00000536301	GPC2	Q8N158	579 aa		7.14	□□□□□ -1.27
CHD4-205	ENST00000536301	ABCC12	Q96J65	1359 aa		7.14	□□□□□ -1.27
CHD4-205	ENST00000536301	USP16	Q9Y5T5	823 aa		7.14	□□□□□ -1.27
CHD4-205	ENST00000536301	ECE1	P42892	770 aa		7.13	□□□□□ -1.27
CHD4-205	ENST00000536301	HLF	Q16534	295 aa		7.13	□□□□□ -1.27
CHD4-205	ENST00000536301	CIAPIN1	Q6FI81	312 aa		7.13	□□□□□ -1.27
CHD4-205	ENST00000536301	ZNF790	Q6PG37	636 aa		7.13	□□□□□ -1.27
CHD4-205	ENST00000536301	BEGAIN	Q9BUH8	593 aa		7.13	□□□□□ -1.27
CHD4-205	ENST00000536301	GLIS2	Q9BZE0	524 aa	Predicted RBP	7.13	□□□□□ -1.27
CHD4-205	ENST00000536301	SHTN1	A0MZ66	631 aa		7.12	□□□□□ -1.27
CHD4-205	ENST00000536301	NBPF26	B4DH59	902 aa		7.12	□□□□□ -1.27
CHD4-205	ENST00000536301	CELF2	O95319	508 aa	Known RBP	7.12	□□□□□ -1.27
CHD4-205	ENST00000536301	NBPF10	Q6P3W6	841 aa	Known RBP	7.12	□□□□□ -1.27
CHD4-205	ENST00000536301	SAPCD2	Q86UD0	394 aa		7.12	□□□□□ -1.27
CHD4-205	ENST00000536301	RTKN2	Q8IZC4	609 aa		7.12	□□□□□ -1.27
CHD4-205	ENST00000536301	NBPF15	Q8N660	670 aa		7.12	□□□□□ -1.27
CHD4-205	ENST00000536301	NUP98	P52948	1817 aa		7.11	□□□□□ -1.27
CHD4-205	ENST00000536301	TCERG1	O14776	1098 aa	Known RBP	7.11	□□□□□ -1.27
CHD4-205	ENST00000536301	LMOD1	P29536	600 aa	Predicted RBP	7.11	□□□□□ -1.27
CHD4-205	ENST00000536301	MAP2K2	P36507	400 aa		7.11	□□□□□ -1.27
CHD4-205	ENST00000536301	EIF6	P56537	245 aa	Known RBP	7.11	□□□□□ -1.27
CHD4-205	ENST00000536301	AMER1	Q5JTC6	1135 aa	Predicted RBP	7.11	□□□□□ -1.27
CHD4-205	ENST00000536301	C3orf67	Q6ZVT6	689 aa		7.11	□□□□□ -1.27
CHD4-205	ENST00000536301	NUTM1	Q86Y26	1132 aa		7.11	□□□□□ -1.27
CHD4-205	ENST00000536301	TRPM4	Q8TD43	1214 aa		7.11	□□□□□ -1.27
CHD4-205	ENST00000536301	FMNL2	Q96PY5	1086 aa		7.11	□□□□□ -1.27

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